Chapter 14 Logistic Regression
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Logistic Regression, Dependencies, Non-Linear Data and Model Reduction
COMP6237 – Logistic Regression, Dependencies, Non-linear Data and Model Reduction Markus Brede [email protected] Lecture slides available here: http://users.ecs.soton.ac.uk/mb8/stats/datamining.html (Thanks to Jason Noble and Cosma Shalizi whose lecture materials I used to prepare) COMP6237: Logistic Regression ● Outline: – Introduction – Basic ideas of logistic regression – Logistic regression using R – Some underlying maths and MLE – The multinomial case – How to deal with non-linear data ● Model reduction and AIC – How to deal with dependent data – Summary – Problems Introduction ● Previous lecture: Linear regression – tried to predict a continuous variable from variation in another continuous variable (E.g. basketball ability from height) ● Here: Logistic regression – Try to predict results of a binary (or categorical) outcome variable Y from a predictor variable X – This is a classification problem: classify X as belonging to one of two classes – Occurs quite often in science … e.g. medical trials (will a patient live or die dependent on medication?) Dependent variable Y Predictor Variables X The Oscars Example ● A fictional data set that looks at what it takes for a movie to win an Oscar ● Outcome variable: Oscar win, yes or no? ● Predictor variables: – Box office takings in millions of dollars – Budget in millions of dollars – Country of origin: US, UK, Europe, India, other – Critical reception (scores 0 … 100) – Length of film in minutes – This (fictitious) data set is available here: https://www.southampton.ac.uk/~mb1a10/stats/filmData.txt Predicting Oscar Success ● Let's start simple and look at only one of the predictor variables ● Do big box office takings make Oscar success more likely? ● Could use same techniques as below to look at budget size, film length, etc. -
Small-Sample Properties of Tests for Heteroscedasticity in the Conditional Logit Model
HEDG Working Paper 06/04 Small-sample properties of tests for heteroscedasticity in the conditional logit model Arne Risa Hole May 2006 ISSN 1751-1976 york.ac.uk/res/herc/hedgwp Small-sample properties of tests for heteroscedasticity in the conditional logit model Arne Risa Hole National Primary Care Research and Development Centre Centre for Health Economics University of York May 16, 2006 Abstract This paper compares the small-sample properties of several asymp- totically equivalent tests for heteroscedasticity in the conditional logit model. While no test outperforms the others in all of the experiments conducted, the likelihood ratio test and a particular variety of the Wald test are found to have good properties in moderate samples as well as being relatively powerful. Keywords: conditional logit, heteroscedasticity JEL classi…cation: C25 National Primary Care Research and Development Centre, Centre for Health Eco- nomics, Alcuin ’A’Block, University of York, York YO10 5DD, UK. Tel.: +44 1904 321404; fax: +44 1904 321402. E-mail address: [email protected]. NPCRDC receives funding from the Department of Health. The views expressed are not necessarily those of the funders. 1 1 Introduction In most applications of the conditional logit model the error term is assumed to be homoscedastic. Recently, however, there has been a growing interest in testing the homoscedasticity assumption in applied work (Hensher et al., 1999; DeShazo and Fermo, 2002). This is partly due to the well-known result that heteroscedasticity causes the coe¢ cient estimates in discrete choice models to be inconsistent (Yatchew and Griliches, 1985), but also re‡ects a behavioural interest in factors in‡uencing the variance of the latent variables in the model (Louviere, 2001; Louviere et al., 2002). -
A Simple Censored Median Regression Estimator
Statistica Sinica 16(2006), 1043-1058 A SIMPLE CENSORED MEDIAN REGRESSION ESTIMATOR Lingzhi Zhou The Hong Kong University of Science and Technology Abstract: Ying, Jung and Wei (1995) proposed an estimation procedure for the censored median regression model that regresses the median of the survival time, or its transform, on the covariates. The procedure requires solving complicated nonlinear equations and thus can be very difficult to implement in practice, es- pecially when there are multiple covariates. Moreover, the asymptotic covariance matrix of the estimator involves the density of the errors that cannot be esti- mated reliably. In this paper, we propose a new estimator for the censored median regression model. Our estimation procedure involves solving some convex min- imization problems and can be easily implemented through linear programming (Koenker and D'Orey (1987)). In addition, a resampling method is presented for estimating the covariance matrix of the new estimator. Numerical studies indi- cate the superiority of the finite sample performance of our estimator over that in Ying, Jung and Wei (1995). Key words and phrases: Censoring, convexity, LAD, resampling. 1. Introduction The accelerated failure time (AFT) model, which relates the logarithm of the survival time to covariates, is an attractive alternative to the popular Cox (1972) proportional hazards model due to its ease of interpretation. The model assumes that the failure time T , or some monotonic transformation of it, is linearly related to the covariate vector Z 0 Ti = β0Zi + "i; i = 1; : : : ; n: (1.1) Under censoring, we only observe Yi = min(Ti; Ci), where Ci are censoring times, and Ti and Ci are independent conditional on Zi. -
Understanding Linear and Logistic Regression Analyses
EDUCATION • ÉDUCATION METHODOLOGY Understanding linear and logistic regression analyses Andrew Worster, MD, MSc;*† Jerome Fan, MD;* Afisi Ismaila, MSc† SEE RELATED ARTICLE PAGE 105 egression analysis, also termed regression modeling, come). For example, a researcher could evaluate the poten- Ris an increasingly common statistical method used to tial for injury severity score (ISS) to predict ED length-of- describe and quantify the relation between a clinical out- stay by first producing a scatter plot of ISS graphed against come of interest and one or more other variables. In this ED length-of-stay to determine whether an apparent linear issue of CJEM, Cummings and Mayes used linear and lo- relation exists, and then by deriving the best fit straight line gistic regression to determine whether the type of trauma for the data set using linear regression carried out by statis- team leader (TTL) impacts emergency department (ED) tical software. The mathematical formula for this relation length-of-stay or survival.1 The purpose of this educa- would be: ED length-of-stay = k(ISS) + c. In this equation, tional primer is to provide an easily understood overview k (the slope of the line) indicates the factor by which of these methods of statistical analysis. We hope that this length-of-stay changes as ISS changes and c (the “con- primer will not only help readers interpret the Cummings stant”) is the value of length-of-stay when ISS equals zero and Mayes study, but also other research that uses similar and crosses the vertical axis.2 In this hypothetical scenario, methodology. -
Cluster Analysis, a Powerful Tool for Data Analysis in Education
International Statistical Institute, 56th Session, 2007: Rita Vasconcelos, Mßrcia Baptista Cluster Analysis, a powerful tool for data analysis in Education Vasconcelos, Rita Universidade da Madeira, Department of Mathematics and Engeneering Caminho da Penteada 9000-390 Funchal, Portugal E-mail: [email protected] Baptista, Márcia Direcção Regional de Saúde Pública Rua das Pretas 9000 Funchal, Portugal E-mail: [email protected] 1. Introduction A database was created after an inquiry to 14-15 - year old students, which was developed with the purpose of identifying the factors that could socially and pedagogically frame the results in Mathematics. The data was collected in eight schools in Funchal (Madeira Island), and we performed a Cluster Analysis as a first multivariate statistical approach to this database. We also developed a logistic regression analysis, as the study was carried out as a contribution to explain the success/failure in Mathematics. As a final step, the responses of both statistical analysis were studied. 2. Cluster Analysis approach The questions that arise when we try to frame socially and pedagogically the results in Mathematics of 14-15 - year old students, are concerned with the types of decisive factors in those results. It is somehow underlying our objectives to classify the students according to the factors understood by us as being decisive in students’ results. This is exactly the aim of Cluster Analysis. The hierarchical solution that can be observed in the dendogram presented in the next page, suggests that we should consider the 3 following clusters, since the distances increase substantially after it: Variables in Cluster1: mother qualifications; father qualifications; student’s results in Mathematics as classified by the school teacher; student’s results in the exam of Mathematics; time spent studying. -
The Detection of Heteroscedasticity in Regression Models for Psychological Data
Psychological Test and Assessment Modeling, Volume 58, 2016 (4), 567-592 The detection of heteroscedasticity in regression models for psychological data Andreas G. Klein1, Carla Gerhard2, Rebecca D. Büchner2, Stefan Diestel3 & Karin Schermelleh-Engel2 Abstract One assumption of multiple regression analysis is homoscedasticity of errors. Heteroscedasticity, as often found in psychological or behavioral data, may result from misspecification due to overlooked nonlinear predictor terms or to unobserved predictors not included in the model. Although methods exist to test for heteroscedasticity, they require a parametric model for specifying the structure of heteroscedasticity. The aim of this article is to propose a simple measure of heteroscedasticity, which does not need a parametric model and is able to detect omitted nonlinear terms. This measure utilizes the dispersion of the squared regression residuals. Simulation studies show that the measure performs satisfactorily with regard to Type I error rates and power when sample size and effect size are large enough. It outperforms the Breusch-Pagan test when a nonlinear term is omitted in the analysis model. We also demonstrate the performance of the measure using a data set from industrial psychology. Keywords: Heteroscedasticity, Monte Carlo study, regression, interaction effect, quadratic effect 1Correspondence concerning this article should be addressed to: Prof. Dr. Andreas G. Klein, Department of Psychology, Goethe University Frankfurt, Theodor-W.-Adorno-Platz 6, 60629 Frankfurt; email: [email protected] 2Goethe University Frankfurt 3International School of Management Dortmund Leipniz-Research Centre for Working Environment and Human Factors 568 A. G. Klein, C. Gerhard, R. D. Büchner, S. Diestel & K. Schermelleh-Engel Introduction One of the standard assumptions underlying a linear model is that the errors are inde- pendently identically distributed (i.i.d.). -
Multinomial Logistic Regression
26-Osborne (Best)-45409.qxd 10/9/2007 5:52 PM Page 390 26 MULTINOMIAL LOGISTIC REGRESSION CAROLYN J. ANDERSON LESLIE RUTKOWSKI hapter 24 presented logistic regression Many of the concepts used in binary logistic models for dichotomous response vari- regression, such as the interpretation of parame- C ables; however, many discrete response ters in terms of odds ratios and modeling prob- variables have three or more categories (e.g., abilities, carry over to multicategory logistic political view, candidate voted for in an elec- regression models; however, two major modifica- tion, preferred mode of transportation, or tions are needed to deal with multiple categories response options on survey items). Multicate- of the response variable. One difference is that gory response variables are found in a wide with three or more levels of the response variable, range of experiments and studies in a variety of there are multiple ways to dichotomize the different fields. A detailed example presented in response variable. If J equals the number of cate- this chapter uses data from 600 students from gories of the response variable, then J(J – 1)/2 dif- the High School and Beyond study (Tatsuoka & ferent ways exist to dichotomize the categories. Lohnes, 1988) to look at the differences among In the High School and Beyond study, the three high school students who attended academic, program types can be dichotomized into pairs general, or vocational programs. The students’ of programs (i.e., academic and general, voca- socioeconomic status (ordinal), achievement tional and general, and academic and vocational). test scores (numerical), and type of school How the response variable is dichotomized (nominal) are all examined as possible explana- depends, in part, on the nature of the variable. -
Logit and Ordered Logit Regression (Ver
Getting Started in Logit and Ordered Logit Regression (ver. 3.1 beta) Oscar Torres-Reyna Data Consultant [email protected] http://dss.princeton.edu/training/ PU/DSS/OTR Logit model • Use logit models whenever your dependent variable is binary (also called dummy) which takes values 0 or 1. • Logit regression is a nonlinear regression model that forces the output (predicted values) to be either 0 or 1. • Logit models estimate the probability of your dependent variable to be 1 (Y=1). This is the probability that some event happens. PU/DSS/OTR Logit odelm From Stock & Watson, key concept 9.3. The logit model is: Pr(YXXXFXX 1 | 1= , 2 ,...=k β ) +0 β ( 1 +2 β 1 +βKKX 2 + ... ) 1 Pr(YXXX 1= | 1 , 2k = ,... ) 1−+(eβ0 + βXX 1 1 + β 2 2 + ...βKKX + ) 1 Pr(YXXX 1= | 1 , 2= ,... ) k ⎛ 1 ⎞ 1+ ⎜ ⎟ (⎝ eβ+0 βXX 1 1 + β 2 2 + ...βKK +X ⎠ ) Logit nd probita models are basically the same, the difference is in the distribution: • Logit – Cumulative standard logistic distribution (F) • Probit – Cumulative standard normal distribution (Φ) Both models provide similar results. PU/DSS/OTR It tests whether the combined effect, of all the variables in the model, is different from zero. If, for example, < 0.05 then the model have some relevant explanatory power, which does not mean it is well specified or at all correct. Logit: predicted probabilities After running the model: logit y_bin x1 x2 x3 x4 x5 x6 x7 Type predict y_bin_hat /*These are the predicted probabilities of Y=1 */ Here are the estimations for the first five cases, type: 1 x2 x3 x4 x5 x6 x7 y_bin_hatbrowse y_bin x Predicted probabilities To estimate the probability of Y=1 for the first row, replace the values of X into the logit regression equation. -
Testing Hypotheses for Differences Between Linear Regression Lines
United States Department of Testing Hypotheses for Differences Agriculture Between Linear Regression Lines Forest Service Stanley J. Zarnoch Southern Research Station e-Research Note SRS–17 May 2009 Abstract The general linear model (GLM) is often used to test for differences between means, as for example when the Five hypotheses are identified for testing differences between simple linear analysis of variance is used in data analysis for designed regression lines. The distinctions between these hypotheses are based on a priori assumptions and illustrated with full and reduced models. The studies. However, the GLM has a much wider application contrast approach is presented as an easy and complete method for testing and can also be used to compare regression lines. The for overall differences between the regressions and for making pairwise GLM allows for the use of both qualitative and quantitative comparisons. Use of the Bonferroni adjustment to ensure a desired predictor variables. Quantitative variables are continuous experimentwise type I error rate is emphasized. SAS software is used to illustrate application of these concepts to an artificial simulated dataset. The values such as diameter at breast height, tree height, SAS code is provided for each of the five hypotheses and for the contrasts age, or temperature. However, many predictor variables for the general test and all possible specific tests. in the natural resources field are qualitative. Examples of qualitative variables include tree class (dominant, Keywords: Contrasts, dummy variables, F-test, intercept, SAS, slope, test of conditional error. codominant); species (loblolly, slash, longleaf); and cover type (clearcut, shelterwood, seed tree). Fraedrich and others (1994) compared linear regressions of slash pine cone specific gravity and moisture content Introduction on collection date between families of slash pine grown in a seed orchard. -
Application of General Linear Models (GLM) to Assess Nodule Abundance Based on a Photographic Survey (Case Study from IOM Area, Pacific Ocean)
minerals Article Application of General Linear Models (GLM) to Assess Nodule Abundance Based on a Photographic Survey (Case Study from IOM Area, Pacific Ocean) Monika Wasilewska-Błaszczyk * and Jacek Mucha Department of Geology of Mineral Deposits and Mining Geology, Faculty of Geology, Geophysics and Environmental Protection, AGH University of Science and Technology, 30-059 Cracow, Poland; [email protected] * Correspondence: [email protected] Abstract: The success of the future exploitation of the Pacific polymetallic nodule deposits depends on an accurate estimation of their resources, especially in small batches, scheduled for extraction in the short term. The estimation based only on the results of direct seafloor sampling using box corers is burdened with a large error due to the long sampling interval and high variability of the nodule abundance. Therefore, estimations should take into account the results of bottom photograph analyses performed systematically and in large numbers along the course of a research vessel. For photographs taken at the direct sampling sites, the relationship linking the nodule abundance with the independent variables (the percentage of seafloor nodule coverage, the genetic types of nodules in the context of their fraction distribution, and the degree of sediment coverage of nodules) was determined using the general linear model (GLM). Compared to the estimates obtained with a simple Citation: Wasilewska-Błaszczyk, M.; linear model linking this parameter only with the seafloor nodule coverage, a significant decrease Mucha, J. Application of General in the standard prediction error, from 4.2 to 2.5 kg/m2, was found. The use of the GLM for the Linear Models (GLM) to Assess assessment of nodule abundance in individual sites covered by bottom photographs, outside of Nodule Abundance Based on a direct sampling sites, should contribute to a significant increase in the accuracy of the estimation of Photographic Survey (Case Study nodule resources. -
The Simple Linear Regression Model
The Simple Linear Regression Model Suppose we have a data set consisting of n bivariate observations {(x1, y1),..., (xn, yn)}. Response variable y and predictor variable x satisfy the simple linear model if they obey the model yi = β0 + β1xi + ǫi, i = 1,...,n, (1) where the intercept and slope coefficients β0 and β1 are unknown constants and the random errors {ǫi} satisfy the following conditions: 1. The errors ǫ1, . , ǫn all have mean 0, i.e., µǫi = 0 for all i. 2 2 2 2. The errors ǫ1, . , ǫn all have the same variance σ , i.e., σǫi = σ for all i. 3. The errors ǫ1, . , ǫn are independent random variables. 4. The errors ǫ1, . , ǫn are normally distributed. Note that the author provides these assumptions on page 564 BUT ORDERS THEM DIFFERENTLY. Fitting the Simple Linear Model: Estimating β0 and β1 Suppose we believe our data obey the simple linear model. The next step is to fit the model by estimating the unknown intercept and slope coefficients β0 and β1. There are various ways of estimating these from the data but we will use the Least Squares Criterion invented by Gauss. The least squares estimates of β0 and β1, which we will denote by βˆ0 and βˆ1 respectively, are the values of β0 and β1 which minimize the sum of errors squared S(β0, β1): n 2 S(β0, β1) = X ei i=1 n 2 = X[yi − yˆi] i=1 n 2 = X[yi − (β0 + β1xi)] i=1 where the ith modeling error ei is simply the difference between the ith value of the response variable yi and the fitted/predicted valuey ˆi. -
5. Dummy-Variable Regression and Analysis of Variance
Sociology 740 John Fox Lecture Notes 5. Dummy-Variable Regression and Analysis of Variance Copyright © 2014 by John Fox Dummy-Variable Regression and Analysis of Variance 1 1. Introduction I One of the limitations of multiple-regression analysis is that it accommo- dates only quantitative explanatory variables. I Dummy-variable regressors can be used to incorporate qualitative explanatory variables into a linear model, substantially expanding the range of application of regression analysis. c 2014 by John Fox Sociology 740 ° Dummy-Variable Regression and Analysis of Variance 2 2. Goals: I To show how dummy regessors can be used to represent the categories of a qualitative explanatory variable in a regression model. I To introduce the concept of interaction between explanatory variables, and to show how interactions can be incorporated into a regression model by forming interaction regressors. I To introduce the principle of marginality, which serves as a guide to constructing and testing terms in complex linear models. I To show how incremental I -testsareemployedtotesttermsindummy regression models. I To show how analysis-of-variance models can be handled using dummy variables. c 2014 by John Fox Sociology 740 ° Dummy-Variable Regression and Analysis of Variance 3 3. A Dichotomous Explanatory Variable I The simplest case: one dichotomous and one quantitative explanatory variable. I Assumptions: Relationships are additive — the partial effect of each explanatory • variable is the same regardless of the specific value at which the other explanatory variable is held constant. The other assumptions of the regression model hold. • I The motivation for including a qualitative explanatory variable is the same as for including an additional quantitative explanatory variable: to account more fully for the response variable, by making the errors • smaller; and to avoid a biased assessment of the impact of an explanatory variable, • as a consequence of omitting another explanatory variables that is relatedtoit.