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Lecture 20 - the History of Life on Earth
Lecture 20 - The History of Life on Earth Lecture 20 The History of Life on Earth Astronomy 141 – Autumn 2012 This lecture reviews the history of life on Earth. Rapid diversification of anaerobic prokaryotes during the Proterozoic Eon Emergence of Photosynthesis and the rise of O2 in the Earth’s atmosphere. Rise of Eukaryotes and the Cambrian Explosion in biodiversity at the start of the Phanerozoic Eon Colonization of land first by plants, then by animals Emergence of primates, then hominids, then humans. A brief digression on notation: “ya” = “years ago” Introduce a simple compact notation for writing the length of time before the present day. For example: “3.5 Billion years ago” “454 Million years ago” Gya = “giga-years ago”, hence 3.5 Gya = 3.5 Billion years ago Mya = “mega-years ago”, hence 454 Mya = 454 Million years ago [Note: some sources use Ga and Ma] Astronomy 141 - Winter 2012 1 Lecture 20 - The History of Life on Earth The four Eons of geological time. Hadean: 4.5 – 3.8 Gya: Formation, oceans & atmosphere Archaean: 3.8 – 2.5 Gya: Stromatolites & fossil bacteria Proterozoic: 2.5 Gya – 454 Mya: Eukarya and Oxygen Phanerozoic: since 454 Mya: Rise of plant and animal life The Archaean Eon began with the end of heavy bombardment ~3.8 Gya. Conditions stabilized. Oceans, but no O2 in the atmosphere. Stromatolites appear in the geological record ~3.5 Gya and thrived for >1 Billion years Rise of anaerobic microbes in the deep ocean & shores using Chemosynthesis. Time of rapid diversification of life driven by Natural Selection. -
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
Evolution by Natural Selection, Formulated Independently by Charles Darwin and Alfred Russel Wallace
UNIT 4 EVOLUTIONARY PATT EVOLUTIONARY E RNS AND PROC E SS E Evolution by Natural S 22 Selection Natural selection In this chapter you will learn that explains how Evolution is one of the most populations become important ideas in modern biology well suited to their environments over time. The shape and by reviewing by asking by applying coloration of leafy sea The rise of What is the evidence for evolution? Evolution in action: dragons (a fish closely evolutionary thought two case studies related to seahorses) 22.1 22.4 are heritable traits that with regard to help them to hide from predators. The pattern of evolution: The process of species have changed evolution by natural and are related 22.2 selection 22.3 keeping in mind Common myths about natural selection and adaptation 22.5 his chapter is about one of the great ideas in science: the theory of evolution by natural selection, formulated independently by Charles Darwin and Alfred Russel Wallace. The theory explains how T populations—individuals of the same species that live in the same area at the same time—have come to be adapted to environments ranging from arctic tundra to tropical wet forest. It revealed one of the five key attributes of life: Populations of organisms evolve. In other words, the heritable characteris- This chapter is part of the tics of populations change over time (Chapter 1). Big Picture. See how on Evolution by natural selection is one of the best supported and most important theories in the history pages 516–517. of scientific research. -
Many but Not All Lineage-Specific Genes Can Be Explained by Homology Detection Failure
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.27.968420; this version posted April 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Many but not all lineage-specific genes can be explained by homology detection failure Caroline M. Weisman1, Andrew W. Murray1, Sean R. Eddy1,2,3 1 Department of Molecular & Cellular Biology, 2 Howard Hughes Medical Institute, 3 John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge MA, USA Abstract Genes for which homologs can be detected only in a limited group of evolutionarily related species, called “lineage-specific genes,” are pervasive: essentially every lineage has them, and they often comprise a sizable fraction of the group’s total genes. Lineage-specific genes are often interpreted as “novel” genes, representing genetic novelty born anew within that lineage. Here, we develop a simple method to test an alternative null hypothesis: that lineage-specific genes do have homologs outside of the lineage that, even while evolving at a constant rate in a novelty-free manner, have merely become undetectable by search algorithms used to infer homology. We show that this null hypothesis is sufficient to explain the lack of detected homologs of a large number of lineage-specific genes in fungi and insects. However, we also find that a minority of lineage-specific genes in both clades are not well-explained by this novelty- free model. -
The Mesozoic Era Alvarez, W.(1997)
Alles Introductory Biology: Illustrated Lecture Presentations Instructor David L. Alles Western Washington University ----------------------- Part Three: The Integration of Biological Knowledge Vertebrate Evolution in the Late Paleozoic and Mesozoic Eras ----------------------- Vertebrate Evolution in the Late Paleozoic and Mesozoic • Amphibians to Reptiles Internal Fertilization, the Amniotic Egg, and a Water-Tight Skin • The Adaptive Radiation of Reptiles from Scales to Hair and Feathers • Therapsids to Mammals • Dinosaurs to Birds Ectothermy to Endothermy The Evolution of Reptiles The Phanerozoic Eon 444 365 251 Paleozoic Era 542 m.y.a. 488 416 360 299 Camb. Ordov. Sil. Devo. Carbon. Perm. Cambrian Pikaia Fish Fish First First Explosion w/o jaws w/ jaws Amphibians Reptiles 210 65 Mesozoic Era 251 200 180 150 145 Triassic Jurassic Cretaceous First First First T. rex Dinosaurs Mammals Birds Cenozoic Era Last Ice Age 65 56 34 23 5 1.8 0.01 Paleo. Eocene Oligo. Miocene Plio. Ple. Present Early Primate First New First First Modern Cantius World Monkeys Apes Hominins Humans A modern Amphibian—the toad A modern day Reptile—a skink, note the finely outlined scales. A Comparison of Amphibian and Reptile Reproduction The oldest known reptile is Hylonomus lyelli dating to ~ 320 m.y.a.. The earliest or stem reptiles radiated into therapsids leading to mammals, and archosaurs leading to all the other reptile groups including the thecodontians, ancestors of the dinosaurs. Dimetrodon, a Mammal-like Reptile of the Early Permian Dicynodonts were a group of therapsids of the late Permian. Web Reference http://www.museums.org.za/sam/resource/palaeo/cluver/index.html Therapsids experienced an adaptive radiation during the Permian, but suffered heavy extinctions during the end Permian mass extinction. -
A Fundamental Precambrian–Phanerozoic Shift in Earth's Glacial
Tectonophysics 375 (2003) 353–385 www.elsevier.com/locate/tecto A fundamental Precambrian–Phanerozoic shift in earth’s glacial style? D.A.D. Evans* Department of Geology and Geophysics, Yale University, P.O. Box 208109, 210 Whitney Avenue, New Haven, CT 06520-8109, USA Received 24 May 2002; received in revised form 25 March 2003; accepted 5 June 2003 Abstract It has recently been found that Neoproterozoic glaciogenic sediments were deposited mainly at low paleolatitudes, in marked qualitative contrast to their Pleistocene counterparts. Several competing models vie for explanation of this unusual paleoclimatic record, most notably the high-obliquity hypothesis and varying degrees of the snowball Earth scenario. The present study quantitatively compiles the global distributions of Miocene–Pleistocene glaciogenic deposits and paleomagnetically derived paleolatitudes for Late Devonian–Permian, Ordovician–Silurian, Neoproterozoic, and Paleoproterozoic glaciogenic rocks. Whereas high depositional latitudes dominate all Phanerozoic ice ages, exclusively low paleolatitudes characterize both of the major Precambrian glacial epochs. Transition between these modes occurred within a 100-My interval, precisely coeval with the Neoproterozoic–Cambrian ‘‘explosion’’ of metazoan diversity. Glaciation is much more common since 750 Ma than in the preceding sedimentary record, an observation that cannot be ascribed merely to preservation. These patterns suggest an overall cooling of Earth’s longterm climate, superimposed by developing regulatory feedbacks -
Convergent Evolution
Exploring the KU Natural History Museum Convergent Evolution Target Audience: Middle school and above Differentiated Instruction Summary Strategy Levels Content/Process/Product Grouping(s) Learning modalities Whole group • Level 1 – Visual (spatial) Small groups Process Cubing Level 2 – Kinesthetic (physical) Peer partners • Product • Level 3 – Verbal (linguistic) Homogeneous Heterogeneous * Varied grouping options can be used for this activity, depending on student needs and chaperone ability. Objectives: Explore examples of convergent evolution in vertebrates. Pre-assessment/Prior Knowledge: Prior to their visit, students should be familiar with the idea of convergent evolution, overall evolutionary relationships/classification of vertebrate groups and basic anatomy of those groups. Activity Description: Students explore the idea of convergent evolution through museum exhibits through different learning modalities. Materials Needed: • Student o Cubes (three levels, see attached) o Paper and pencils (alternatively you could use flipchart paper and markers, whiteboards and dry erase markers) o Optional (cell phones or other recording device for visual or kinesthetic levels) Note: Format to record/present findings determined by individual teacher. Provide clear instructions about expectations for documenting participation, particularly for verbal/spatial and body/kinesthetic levels (e.g. stage direction, audio/video recording). • Teacher o Content Outline o Cube labels o Cube template Content: Convergence Overview Convergent evolution refers to the similarities in biological traits that arise independently in organisms that are not closely related, e.g. wings in birds, bats and insects. Similarity among organisms and their structures that was not inherited from a common ancestor is considered to be homoplasy. This can be contrasted with homology, which refers to similarity of traits due to common ancestry. -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
Ediacaran Algal Cysts from the Doushantuo Formation, South China
Geological Magazine Ediacaran algal cysts from the Doushantuo www.cambridge.org/geo Formation, South China Małgorzata Moczydłowska1 and Pengju Liu2 1 Original Article Uppsala University, Department of Earth Sciences, Palaeobiology, Villavägen 16, SE 752 36 Uppsala, Sweden and 2Institute of Geology, Chinese Academy of Geological Science, Beijing 100037, China Cite this article: Moczydłowska M and Liu P. Ediacaran algal cysts from the Doushantuo Abstract Formation, South China. Geological Magazine https://doi.org/10.1017/S0016756820001405 Early-middle Ediacaran organic-walled microfossils from the Doushantuo Formation studied in several sections in the Yangtze Gorges area, South China, show ornamented cyst-like vesicles Received: 24 February 2020 of very high diversity. These microfossils are diagenetically permineralized and observed in pet- Revised: 1 December 2020 rographic thin-sections of chert nodules. Exquisitely preserved specimens belonging to seven Accepted: 2 December 2020 species of Appendisphaera, Mengeosphaera, Tanarium, Urasphaera and Tianzhushania contain Keywords: either single or multiple spheroidal internal bodies inside the vesicles. These structures indicate organic-walled microfossils; zygotic cysts; reproductive stages, endocyst and dividing cells, respectively, and are preserved at early to late Chloroplastida; microalgae; animal embryos; ontogenetic stages in the same taxa. This new evidence supports the algal affiliations for the eukaryotic evolution studied taxa and refutes previous suggestions of Tianzhushania being animal embryo or holo- Author for correspondence: Małgorzata zoan. The first record of a late developmental stage of a completely preserved specimen of Moczydłowska, Email: [email protected] T. spinosa observed in thin-section demonstrates the interior of vesicles with clusters of iden- tical cells but without any cavity that is diagnostic for recognizing algal cysts vs animal diapause cysts. -
Evolution of the Muscular System in Tetrapod Limbs Tatsuya Hirasawa1* and Shigeru Kuratani1,2
Hirasawa and Kuratani Zoological Letters (2018) 4:27 https://doi.org/10.1186/s40851-018-0110-2 REVIEW Open Access Evolution of the muscular system in tetrapod limbs Tatsuya Hirasawa1* and Shigeru Kuratani1,2 Abstract While skeletal evolution has been extensively studied, the evolution of limb muscles and brachial plexus has received less attention. In this review, we focus on the tempo and mode of evolution of forelimb muscles in the vertebrate history, and on the developmental mechanisms that have affected the evolution of their morphology. Tetrapod limb muscles develop from diffuse migrating cells derived from dermomyotomes, and the limb-innervating nerves lose their segmental patterns to form the brachial plexus distally. Despite such seemingly disorganized developmental processes, limb muscle homology has been highly conserved in tetrapod evolution, with the apparent exception of the mammalian diaphragm. The limb mesenchyme of lateral plate mesoderm likely plays a pivotal role in the subdivision of the myogenic cell population into individual muscles through the formation of interstitial muscle connective tissues. Interactions with tendons and motoneuron axons are involved in the early and late phases of limb muscle morphogenesis, respectively. The mechanism underlying the recurrent generation of limb muscle homology likely resides in these developmental processes, which should be studied from an evolutionary perspective in the future. Keywords: Development, Evolution, Homology, Fossils, Regeneration, Tetrapods Background other morphological characters that may change during The fossil record reveals that the evolutionary rate of growth. Skeletal muscles thus exhibit clear advantages vertebrate morphology has been variable, and morpho- for the integration of paleontology and evolutionary logical deviations and alterations have taken place unevenly developmental biology. -
The 'Role' a Concept Plays in Science — the Case of Homology
The ‘Role’ a Concept Plays in Science — The Case of Homology INGO BRIGANDT Department of History and Philosophy of Science University of Pittsburgh 1017 Cathedral of Learning Pittsburgh, PA 15260 USA E-mail: [email protected] August 19, 2001 Abstract. This article tries to clarify the idea that a concept plays a certain role for a scientific field or a research program. The discussion is based on a case study of the homology concept in biology. In particular, I examine how homology plays a different role for comparative, developmental, and molecular biology. The aspects that may constitute the role of a concept emerge from this discussion. Introduction This paper deals with concepts and conceptual change in science by trying to shed some light on the idea that a concept plays a certain ‘role’ for a scientific field or a research approach. My original motivation to address this topic stems from semantic considerations. I disagree with standard causal theories of reference because they do not take conceptual change in science and its reasons seriously. Causal theories often have a somewhat static (in fact preformationist) understanding of concepts (our belief about the referent is usually considered to change), and they often look to the wrong place if they have to account for apparent changes in meaning. Instead, my idea is to focus on the role a concept plays — when the role of a scientific concept changes, then we have a change in meaning of this term. This is an approach that is neither a THE ‘ROLE’ A CONCEPT PLAYS IN SCIENCE 2 causal nor a descriptive theory of reference, and it is able to keep change of meaning and change of theory apart — not every change of theory amounts to a new role for a concept. -
CO2 As a Primary Driver of Phanerozoic Climate
The role of CO2 in regulating cli- CO as a primary driver of mate over Phanerozoic timescales has 2 recently been questioned using δ18O records of shallow marine carbonate Phanerozoic climate (Veizer et al., 2000) and modeled pat- terns of cosmic ray fluxes (Shaviv and Dana L. Royer, Department of Geosciences and Institutes of the Environment, Veizer, 2003). The low-latitude δ18O Pennsylvania State University, University Park, Pennsylvania 16802, USA, compilation (Veizer et al., 1999, 2000), [email protected] taken to reflect surface water tempera- Robert A. Berner, Department of Geology and Geophysics, Yale University, New tures, is decoupled from the CO2 record Haven, Connecticut 06520, USA and instead more closely correlates with the cosmic ray flux data. If correct, Isabel P. Montañez, Department of Geology, University of California, Davis, cosmic rays, ostensibly acting through California 95616, USA variations in cloud albedo, may be Neil J. Tabor, Department of Geological Sciences, Southern Methodist University, more important than CO2 in regulating Dallas, Texas 75275, USA Phanerozoic climate. Here we scrutinize the pre-Quaternary David J. Beerling, Department of Animal and Plant Sciences, University of Sheffield, records of CO , temperature, and cos- Sheffield S10 2TN, UK 2 mic ray flux in an attempt to resolve current discrepancies. We first compare proxy reconstructions and model pre- ABSTRACT INTRODUCTION dictions of CO2 to gauge how securely Recent studies have purported to Atmospheric CO2 is an important we understand the major patterns of show a closer correspondence between greenhouse gas, and because of its short Phanerozoic CO2. Using this record of reconstructed Phanerozoic records of residence time (~4 yr) and numerous CO2 and Ca concentrations in cosmic ray flux and temperature than sources and sinks, it has the potential Phanerozoic seawater, we then modify between CO2 and temperature.