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Generalized Linear Models and Generalized Additive Models
00:34 Friday 27th February, 2015 Copyright ©Cosma Rohilla Shalizi; do not distribute without permission updates at http://www.stat.cmu.edu/~cshalizi/ADAfaEPoV/ Chapter 13 Generalized Linear Models and Generalized Additive Models [[TODO: Merge GLM/GAM and Logistic Regression chap- 13.1 Generalized Linear Models and Iterative Least Squares ters]] [[ATTN: Keep as separate Logistic regression is a particular instance of a broader kind of model, called a gener- chapter, or merge with logis- alized linear model (GLM). You are familiar, of course, from your regression class tic?]] with the idea of transforming the response variable, what we’ve been calling Y , and then predicting the transformed variable from X . This was not what we did in logis- tic regression. Rather, we transformed the conditional expected value, and made that a linear function of X . This seems odd, because it is odd, but it turns out to be useful. Let’s be specific. Our usual focus in regression modeling has been the condi- tional expectation function, r (x)=E[Y X = x]. In plain linear regression, we try | to approximate r (x) by β0 + x β. In logistic regression, r (x)=E[Y X = x] = · | Pr(Y = 1 X = x), and it is a transformation of r (x) which is linear. The usual nota- tion says | ⌘(x)=β0 + x β (13.1) · r (x) ⌘(x)=log (13.2) 1 r (x) − = g(r (x)) (13.3) defining the logistic link function by g(m)=log m/(1 m). The function ⌘(x) is called the linear predictor. − Now, the first impulse for estimating this model would be to apply the transfor- mation g to the response. -
Stochastic Process - Introduction
Stochastic Process - Introduction • Stochastic processes are processes that proceed randomly in time. • Rather than consider fixed random variables X, Y, etc. or even sequences of i.i.d random variables, we consider sequences X0, X1, X2, …. Where Xt represent some random quantity at time t. • In general, the value Xt might depend on the quantity Xt-1 at time t-1, or even the value Xs for other times s < t. • Example: simple random walk . week 2 1 Stochastic Process - Definition • A stochastic process is a family of time indexed random variables Xt where t belongs to an index set. Formal notation, { t : ∈ ItX } where I is an index set that is a subset of R. • Examples of index sets: 1) I = (-∞, ∞) or I = [0, ∞]. In this case Xt is a continuous time stochastic process. 2) I = {0, ±1, ±2, ….} or I = {0, 1, 2, …}. In this case Xt is a discrete time stochastic process. • We use uppercase letter {Xt } to describe the process. A time series, {xt } is a realization or sample function from a certain process. • We use information from a time series to estimate parameters and properties of process {Xt }. week 2 2 Probability Distribution of a Process • For any stochastic process with index set I, its probability distribution function is uniquely determined by its finite dimensional distributions. •The k dimensional distribution function of a process is defined by FXX x,..., ( 1 x,..., k ) = P( Xt ≤ 1 ,..., xt≤ X k) x t1 tk 1 k for anyt 1 ,..., t k ∈ I and any real numbers x1, …, xk . -
Variance Function Regressions for Studying Inequality
Variance Function Regressions for Studying Inequality The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Western, Bruce and Deirdre Bloome. 2009. Variance function regressions for studying inequality. Working paper, Department of Sociology, Harvard University. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:2645469 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Open Access Policy Articles, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#OAP Variance Function Regressions for Studying Inequality Bruce Western1 Deirdre Bloome Harvard University January 2009 1Department of Sociology, 33 Kirkland Street, Cambridge MA 02138. E-mail: [email protected]. This research was supported by a grant from the Russell Sage Foundation. Abstract Regression-based studies of inequality model only between-group differ- ences, yet often these differences are far exceeded by residual inequality. Residual inequality is usually attributed to measurement error or the in- fluence of unobserved characteristics. We present a regression that in- cludes covariates for both the mean and variance of a dependent variable. In this model, the residual variance is treated as a target for analysis. In analyses of inequality, the residual variance might be interpreted as mea- suring risk or insecurity. Variance function regressions are illustrated in an analysis of panel data on earnings among released prisoners in the Na- tional Longitudinal Survey of Youth. We extend the model to a decomposi- tion analysis, relating the change in inequality to compositional changes in the population and changes in coefficients for the mean and variance. -
Flexible Signal Denoising Via Flexible Empirical Bayes Shrinkage
Journal of Machine Learning Research 22 (2021) 1-28 Submitted 1/19; Revised 9/20; Published 5/21 Flexible Signal Denoising via Flexible Empirical Bayes Shrinkage Zhengrong Xing [email protected] Department of Statistics University of Chicago Chicago, IL 60637, USA Peter Carbonetto [email protected] Research Computing Center and Department of Human Genetics University of Chicago Chicago, IL 60637, USA Matthew Stephens [email protected] Department of Statistics and Department of Human Genetics University of Chicago Chicago, IL 60637, USA Editor: Edo Airoldi Abstract Signal denoising—also known as non-parametric regression—is often performed through shrinkage estima- tion in a transformed (e.g., wavelet) domain; shrinkage in the transformed domain corresponds to smoothing in the original domain. A key question in such applications is how much to shrink, or, equivalently, how much to smooth. Empirical Bayes shrinkage methods provide an attractive solution to this problem; they use the data to estimate a distribution of underlying “effects,” hence automatically select an appropriate amount of shrinkage. However, most existing implementations of empirical Bayes shrinkage are less flexible than they could be—both in their assumptions on the underlying distribution of effects, and in their ability to han- dle heteroskedasticity—which limits their signal denoising applications. Here we address this by adopting a particularly flexible, stable and computationally convenient empirical Bayes shrinkage method and apply- ing it to several signal denoising problems. These applications include smoothing of Poisson data and het- eroskedastic Gaussian data. We show through empirical comparisons that the results are competitive with other methods, including both simple thresholding rules and purpose-built empirical Bayes procedures. -
Variance Function Estimation in Multivariate Nonparametric Regression by T
Variance Function Estimation in Multivariate Nonparametric Regression by T. Tony Cai, Lie Wang University of Pennsylvania Michael Levine Purdue University Technical Report #06-09 Department of Statistics Purdue University West Lafayette, IN USA October 2006 Variance Function Estimation in Multivariate Nonparametric Regression T. Tony Cail, Michael Levine* Lie Wangl October 3, 2006 Abstract Variance function estimation in multivariate nonparametric regression is consid- ered and the minimax rate of convergence is established. Our work uses the approach that generalizes the one used in Munk et al (2005) for the constant variance case. As is the case when the number of dimensions d = 1, and very much contrary to the common practice, it is often not desirable to base the estimator of the variance func- tion on the residuals from an optimal estimator of the mean. Instead it is desirable to use estimators of the mean with minimal bias. Another important conclusion is that the first order difference-based estimator that achieves minimax rate of convergence in one-dimensional case does not do the same in the high dimensional case. Instead, the optimal order of differences depends on the number of dimensions. Keywords: Minimax estimation, nonparametric regression, variance estimation. AMS 2000 Subject Classification: Primary: 62G08, 62G20. Department of Statistics, The Wharton School, University of Pennsylvania, Philadelphia, PA 19104. The research of Tony Cai was supported in part by NSF Grant DMS-0306576. 'Corresponding author. Address: 250 N. University Street, Purdue University, West Lafayette, IN 47907. Email: [email protected]. Phone: 765-496-7571. Fax: 765-494-0558 1 Introduction We consider the multivariate nonparametric regression problem where yi E R, xi E S = [0, Ild C Rd while a, are iid random variables with zero mean and unit variance and have bounded absolute fourth moments: E lail 5 p4 < m. -
Residuals, Part II
Biostatistics 650 Mon, November 5 2001 Residuals, Part II Key terms External Studentization Outliers Added Variable Plot — Partial Regression Plot Partial Residual Plot — Component Plus Residual Plot Key ideas/results ¢ 1. An external estimate of ¡ comes from refitting the model without observation . Amazingly, it has an easy formula: £ ¦!¦ ¦ £¥¤§¦©¨ "# 2. Externally Studentized Residuals $ ¦ ¦©¨ ¦!¦)( £¥¤§¦&% ' Ordinary residuals standardized with £*¤§¦ . Also known as R-Student. 3. Residual Taxonomy Names Definition Distribution ¦!¦ ¦+¨-,¥¦ ,0¦ 1 Ordinary ¡ 5 /. &243 ¦768¤§¦©¨ ¦ ¦!¦ 1 ¦!¦ PRESS ¡ &243 9' 5 $ Studentized ¦©¨ ¦ £ ¦!¦ ¤0> % = Internally Studentized : ;<; $ $ Externally Studentized ¦+¨ ¦ £?¤§¦ ¦!¦ ¤0>¤A@ % R-Student = 4. Outliers are unusually large observations, due to an unmodeled shift or an (unmodeled) increase in variance. 5. Outliers are not necessarily bad points; they simply are not consistent with your model. They may posses valuable information about the inadequacies of your model. 1 PRESS Residuals & Studentized Residuals Recall that the PRESS residual has a easy computation form ¦ ¦©¨ PRESS ¦!¦ ( ¦!¦ It’s easy to show that this has variance ¡ , and hence a standardized PRESS residual is 9 ¦ ¦ ¦!¦ ¦ PRESS ¨ ¨ ¨ ¦ : £ ¦!¦ £ ¦!¦ £ ¦ ¦ % % % ' When we standardize a PRESS residual we get the studentized residual! This is very informa- ,¥¦ ¦ tive. We understand the PRESS residual to be the residual at ¦ if we had omitted from the 3 model. However, after adjusting for it’s variance, we get the same thing as a studentized residual. Hence the standardized residual can be interpreted as a standardized PRESS residual. Internal vs External Studentization ,*¦ ¦ The PRESS residuals remove the impact of point ¦ on the fit at . But the studentized 3 ¢ ¦ ¨ ¦ £?% ¦!¦ £ residual : can be corrupted by point by way of ; a large outlier will inflate the residual mean square, and hence £ . -
Variance Function Program
Variance Function Program Version 15.0 (for Windows XP and later) July 2018 W.A. Sadler 71B Middleton Road Christchurch 8041 New Zealand Ph: +64 3 343 3808 e-mail: [email protected] (formerly at Nuclear Medicine Department, Christchurch Hospital) Contents Page Variance Function Program 15.0 1 Windows Vista through Windows 10 Issues 1 Program Help 1 Gestures 1 Program Structure 2 Data Type 3 Automation 3 Program Data Area 3 User Preferences File 4 Auto-processing File 4 Graph Templates 4 Decimal Separator 4 Screen Settings 4 Scrolling through Summaries and Displays 4 The Variance Function 5 Variance Function Output Examples 8 Variance Stabilisation 11 Histogram, Error and Biological Variation Plots 12 Regression Analysis 13 Limit of Blank (LoB) and Limit of Detection (LoD) 14 Bland-Altman Analysis 14 Appendix A (Program Delivery) 16 Appendix B (Program Installation) 16 Appendix C (Program Removal) 16 Appendix D (Example Data, SD and Regression Files) 16 Appendix E (Auto-processing Example Files) 17 Appendix F (History) 17 Appendix G (Changes: Version 14.0 to Version 15.0) 18 Appendix H (Version 14.0 Bug Fixes) 19 References 20 Variance Function Program 15.0 1 Variance Function Program 15.0 The variance function (the relationship between variance and the mean) has several applications in statistical analysis of medical laboratory data (eg. Ref. 1), but the single most important use is probably the construction of (im)precision profile plots (2). This program (VFP.exe) was initially aimed at immunoassay data which exhibit relatively extreme variance relationships. It was based around the “standard” 3-parameter variance function, 2 J σ = (β1 + β2U) 2 where σ denotes variance, U denotes the mean, and β1, β2 and J are the parameters (3, 4). -
Testing for Uncorrelated Residuals in Dynamic Count Models with an Application to Corporate Bankruptcy
Munich Personal RePEc Archive Testing for Uncorrelated Residuals in Dynamic Count Models with an Application to Corporate Bankruptcy Sant’Anna, Pedro H. C. Universidad Carlos III de Madrid May 2013 Online at https://mpra.ub.uni-muenchen.de/48429/ MPRA Paper No. 48429, posted 19 Jul 2013 13:15 UTC Testing for Uncorrelated Residuals in Dynamic Count Models with an Application to Corporate Bankruptcy Pedro H. C. Sant’Anna Universidad Carlos III de Madrid, Getafe, 28903, Spain [email protected] Abstract This article proposes a new diagnostic test for dynamic count models, which is well suited for risk management. Our test proposal is of the Portmanteau-type test for lack of residual autocorrelation. Unlike previous proposals, the resulting test statistic is asymptotically pivotal when innovations are uncorrelated, but not necessarily iid nor a martingale difference. Moreover, the proposed test is able to detect local alter- natives converging to the null at the parametric rate T −1/2, with T the sample size. The finite sample performance of the test statistic is examined by means of a Monte Carlo experiment. Finally, using a dataset on U.S. corporate bankruptcies, we apply our test proposal to check if common risk models are correctly specified. Keywords: Time Series of counts; Residual autocorrelation function; Model checking; Credit risk management. 1 1. Introduction Credit risk affects virtually every financial contract. Therefore the measurement, pricing and management of credit risk have received much attention from economists, bank supervisors and regulators, and financial market practitioners. A widely used measure of credit risk is the probability of corporate default (PD). -
Research Paper Commerce Statistics Inference in Nonlinear Regression Model with Heteroscedastic Errors B. Mahaboob Research Scho
Volume-5, Issue-5, May - 2016 • ISSN No 2277 - 8160 IF : 3.62 | IC Value 70.36 Commerce Research Paper Statistics Inference in Nonlinear Regression Model With Heteroscedastic Errors B. Mahaboob Research Scholar, Department of Mathematics Dr. M. Ramesh Senior Data Scientist, Tech Mahindra, Hyderabad. Dr. Sk. Khadar Assistant Professor (Senior), Department of Mathematics, VIT, Vellore, Babu Tamilnadu. Academic Consultant, Department of CSE, SPMVV Engineering P. Srivyshnavi College, Tirupati. Prof. P. B.Sireesha Research Scholar, Department of Statistics, S.V.University, Tirupati. Balasiddamuni Rtd. Professor ABSTRACT An advent of modern computer science has made it possible for the applied mathematician to study the inferential aspects of an increasing number of nonlinear regression models in recent years. The inferential aspects for nonlinear regression models and the error assumptions are usually analogous to those made for linear regression models. The tests for the hypotheses on parameters of nonlinear regression models are usually based on nonlinear least squares estimates and the normal assumptions of error variables. A more common problem with data that are best fit by a nonlinear regression model than with data that can be adequately fit by the linear regression model is the problem of heteroscedasticity of errors. The problem of heteroscedasticity can be studied with reference to nonlinear regression models in a variety of ways. In the present study, an attempt has been made by developing inferential method for heteroscedastic nonlinear regression model. KEYWORDS : Intrinsically Nonlinear model; Violation of assumptions on Errors; Problem of Heteroscedasticity. I. INTRODUCTION In estimating the linear regression models, the least squares method of estimation is often applied to estimate the unknown parameters of the linear regression model and errors are usually assumed to be independent and identically distributed normal random variables with zero mean and unknown constant variance. -
Examining Residuals
Stat 565 Examining Residuals Jan 14 2016 Charlotte Wickham stat565.cwick.co.nz So far... xt = mt + st + zt Variable Trend Seasonality Noise measured at time t Estimate and{ subtract off Should be left with this, stationary but probably has serial correlation Residuals in Corvallis temperature series Temp - loess smooth on day of year - loess smooth on date Your turn Now I have residuals, how could I check the variance doesn't change through time (i.e. is stationary)? Is the variance stationary? Same checks as for mean except using squared residuals or absolute value of residuals. Why? var(x) = 1/n ∑ ( x - μ)2 Converts a visual comparison of spread to a visual comparison of mean. Plot squared residuals against time qplot(date, residual^2, data = corv) + geom_smooth(method = "loess") Plot squared residuals against season qplot(yday, residual^2, data = corv) + geom_smooth(method = "loess", size = 1) Fitted values against residuals Looking for mean-variance relationship qplot(temp - residual, residual^2, data = corv) + geom_smooth(method = "loess", size = 1) Non-stationary variance Just like the mean you can attempt to remove the non-stationarity in variance. However, to remove non-stationary variance you divide by an estimate of the standard deviation. Your turn For the temperature series, serial dependence (a.k.a autocorrelation) means that today's residual is dependent on yesterday's residual. Any ideas of how we could check that? Is there autocorrelation in the residuals? > corv$residual_lag1 <- c(NA, corv$residual[-nrow(corv)]) > head(corv) . residual residual_lag1 . 1.5856663 NA xt-1 = lag 1 of xt . -0.4928295 1.5856663 . -
A Review on Empirical Likelihood Methods for Regression
Noname manuscript No. (will be inserted by the editor) A Review on Empirical Likelihood Methods for Regression Song Xi Chen · Ingrid Van Keilegom Received: date / Accepted: date Abstract We provide a review on the empirical likelihood method for regression type inference problems. The regression models considered in this review include parametric, semiparametric and nonparametric models. Both missing data and censored data are accommodated. Keywords Censored data; empirical likelihood; missing data; nonparametric regression; parametric regression; semiparametric regression; Wilks’ theorem. 1 Introduction It has been twenty years since Art Owen published his seminal paper (Owen, 1988) that introduces the notion of empirical likelihood (EL). Since then, there has been a rich body of literature on the novel idea of formulating versions of nonparametric likelihood in various settings of statistical inference. There have been two major reviews on the empirical likelihood. The first review was given by Hall and La Scala (1990) in the early years of the EL method, which summarized some key properties of the method. The second one was the book by the inventor of the methodology (Owen, 2001), which provided a comprehensive overview up to that time. The body of empirical likelihood literature is increasing rapidly, and it would be a daunting task to review the entire field in one review paper like this one. We therefore decided to concentrate our review on regression due to its prominence in statistical S.X. Chen Department of Statistics, Iowa State University, Ames, Iowa 50011-1210, USA and Guanghua School of Management, Peking University, China Tel.: 1-515-2942729 Fax: 1-515-2944040 E-mail: [email protected]; [email protected] I. -
Estimating Variance Functions for Weighted Linear Regression
Kansas State University Libraries New Prairie Press Conference on Applied Statistics in Agriculture 1992 - 4th Annual Conference Proceedings ESTIMATING VARIANCE FUNCTIONS FOR WEIGHTED LINEAR REGRESSION Michael S. Williams Hans T. Schreuder Timothy G. Gregoire William A. Bechtold See next page for additional authors Follow this and additional works at: https://newprairiepress.org/agstatconference Part of the Agriculture Commons, and the Applied Statistics Commons This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 4.0 License. Recommended Citation Williams, Michael S.; Schreuder, Hans T.; Gregoire, Timothy G.; and Bechtold, William A. (1992). "ESTIMATING VARIANCE FUNCTIONS FOR WEIGHTED LINEAR REGRESSION," Conference on Applied Statistics in Agriculture. https://doi.org/10.4148/2475-7772.1401 This is brought to you for free and open access by the Conferences at New Prairie Press. It has been accepted for inclusion in Conference on Applied Statistics in Agriculture by an authorized administrator of New Prairie Press. For more information, please contact [email protected]. Author Information Michael S. Williams, Hans T. Schreuder, Timothy G. Gregoire, and William A. Bechtold This is available at New Prairie Press: https://newprairiepress.org/agstatconference/1992/proceedings/13 Conference on153 Applied Statistics in Agriculture Kansas State University ESTIMATING VARIANCE FUNCTIONS FOR WEIGHTED LINEAR REGRESSION Michael S. Williams Hans T. Schreuder Multiresource Inventory Techniques Rocky Mountain Forest and Range Experiment Station USDA Forest Service Fort Collins, Colorado 80526-2098, U.S.A. Timothy G. Gregoire Department of Forestry Virginia Polytechnic Institute and State University Blacksburg, Virginia 24061-0324, U.S.A. William A. Bechtold Research Forester Southeastern Forest Experiment Station Forest Inventory and Analysis Project USDA Forest Service Asheville, North Carolina 28802-2680, U.S.A.