Microbial Ecology
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Deuteromycota Phylum: Deuteromycota Commonly Referred to As the Fungi Imperfecti Or Imperfect Fungi
Deuteromycota Phylum: Deuteromycota Commonly referred to as the Fungi Imperfecti or imperfect fungi. Classification based on asexual stage because: Sexual reproduction rare, occurs only in narrow environmental parameters. Sexual phase of life cycle no longer exist. Phylum: Deuteromycota Phylum: Deuteromycota Only asexual reproduction occurs, typically conidia borne on When mycelial septate. conidiophores. Thallus also may be yeast or dimorphic. Classified according to conidia color, When sexual reproduction discovered, shape, size and number of septa. usually an Ascomycota or less often Form taxon: An artificial classification Basidiomycota. scheme. When sexual reproduction discovered, usually an Ascomycota or less often Basidiomycota. Purpose of Deuteromycota Purpose of Deuteromycota Division was erected to accommodate Instead, recall example of Emericella conidia producing fungi with unknown variecolor (=Aspergillus variecolor). sexual cycle. When sexual stage discovered, Emericella variecolor, the sexual species would be reclassified stage is the telomorph. according to sexual stage. Aspergillus variecolor, the asexual In practice this concept did not work. stage is the anamorph. Thus, sexual stage is often present. 1 Defining Taxa in Deuteromycota Taxonomy of Deuteromycota based mostly on spore morphology Saccardoan System of spore Saccardoan System of classification. Oldest system of defining taxa in Spore Classification. fungi. Artificial means of classification. No longer used in other taxa. Amerosporae: Conidia one celled, Didymosporae: Conidia Ovoid sphaerical, ovoid to elongate or to oblong, one septate short cylindric. Allantosporae: Conidia bean- Hyalodidymospore: shaped, hyaline Conidia Hyaline. to dark. Phaeodidymospore: Hyalosporae: Conidia dark. Conidia hyaline Phaeosporae: Conidia dark. Phragmosporae: Conidia oblong, Dictyosporae: Conidia ovoid to two to many transverse septa oblong, transversely and longitudinally septate. Hyalophramospore: Conidia hyaline. -
Whole Genome Sequencing and Comparative Genomic Analysis Of
Li et al. BMC Genomics (2020) 21:181 https://doi.org/10.1186/s12864-020-6593-1 RESEARCH ARTICLE Open Access Whole genome sequencing and comparative genomic analysis of oleaginous red yeast Sporobolomyces pararoseus NGR identifies candidate genes for biotechnological potential and ballistospores-shooting Chun-Ji Li1,2, Die Zhao3, Bing-Xue Li1* , Ning Zhang4, Jian-Yu Yan1 and Hong-Tao Zou1 Abstract Background: Sporobolomyces pararoseus is regarded as an oleaginous red yeast, which synthesizes numerous valuable compounds with wide industrial usages. This species hold biotechnological interests in biodiesel, food and cosmetics industries. Moreover, the ballistospores-shooting promotes the colonizing of S. pararoseus in most terrestrial and marine ecosystems. However, very little is known about the basic genomic features of S. pararoseus. To assess the biotechnological potential and ballistospores-shooting mechanism of S. pararoseus on genome-scale, the whole genome sequencing was performed by next-generation sequencing technology. Results: Here, we used Illumina Hiseq platform to firstly assemble S. pararoseus genome into 20.9 Mb containing 54 scaffolds and 5963 predicted genes with a N50 length of 2,038,020 bp and GC content of 47.59%. Genome completeness (BUSCO alignment: 95.4%) and RNA-seq analysis (expressed genes: 98.68%) indicated the high-quality features of the current genome. Through the annotation information of the genome, we screened many key genes involved in carotenoids, lipids, carbohydrate metabolism and signal transduction pathways. A phylogenetic assessment suggested that the evolutionary trajectory of the order Sporidiobolales species was evolved from genus Sporobolomyces to Rhodotorula through the mediator Rhodosporidiobolus. Compared to the lacking ballistospores Rhodotorula toruloides and Saccharomyces cerevisiae, we found genes enriched for spore germination and sugar metabolism. -
Taxonomy and Epidemiology of <I>Mucor Irregularis</I> , Agent Of
UvA-DARE (Digital Academic Repository) Taxonomy and epidemiology Mucor irregularis, agent of chronic cutaneous mucormycosis Lu, X.L.; Najafzadeh, M.J.; Dolatabadi, S.; Ran, Y.P.; Gerrits van den Ende, A.H.G.; Shen, Y.N.; Li, C.Y.; Xi, L.Y.; Hao, F.; Zhang, Q.Q.; Li, R.Y.; Hu, Z.M.; Lu, G.; Wang, J.J.; Drogari- Apiranthitou, M.; Klaassen, C.; Meis, J.F.; Hagen, F.; Liu, W.D.; de Hoog, G.S. DOI 10.3767/003158513X665539 Publication date 2013 Document Version Final published version Published in Persoonia - Molecular Phylogeny and Evolution of Fungi Link to publication Citation for published version (APA): Lu, X. L., Najafzadeh, M. J., Dolatabadi, S., Ran, Y. P., Gerrits van den Ende, A. H. G., Shen, Y. N., Li, C. Y., Xi, L. Y., Hao, F., Zhang, Q. Q., Li, R. Y., Hu, Z. M., Lu, G., Wang, J. J., Drogari-Apiranthitou, M., Klaassen, C., Meis, J. F., Hagen, F., Liu, W. D., & de Hoog, G. S. (2013). Taxonomy and epidemiology Mucor irregularis, agent of chronic cutaneous mucormycosis. Persoonia - Molecular Phylogeny and Evolution of Fungi, 30, 48-56. https://doi.org/10.3767/003158513X665539 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. -
Red Pigmented Basidiomycete Mirror Yeast of the Phyllosphere Alec Cobban1, Virginia P
ORIGINAL RESEARCH Revisiting the pink- red pigmented basidiomycete mirror yeast of the phyllosphere Alec Cobban1, Virginia P. Edgcomb1, Gaëtan Burgaud2, Daniel Repeta3 & Edward R. Leadbetter1 1Department of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543 2Université de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, ESIAB, Technopôle Brest-Iroise, Plouzané 29280, France 3Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543 Keywords Abstract Ballistospore, D1/D2, phylogeny, physiology, rRNA, Sporobolomyces. By taking advantage of the ballistoconidium-forming capabilities of members of the genus Sporobolomyces, we recovered ten isolates from deciduous tree Correspondence leaves collected from Vermont and Washington, USA. Analysis of the small Virginia P. Edgcomb, Department of Geology subunit ribosomal RNA gene and the D1/D2 domain of the large subunit and Geophysics, Woods Hole Oceanographic ribosomal RNA gene indicate that all isolates are closely related. Further analysis Institution, Woods Hole, MA 02543. of their physiological attributes shows that all were similarly pigmented yeasts Tel: +1-508-289-3734; Fax: 508-457-2183; E-mail: [email protected] capable of growth under aerobic and microaerophilic conditions, all were toler- ant of repeated freezing and thawing, minimally tolerant to elevated temperature Funding Information and desiccation, and capable of growth in liquid or on solid media -
Competing Sexual and Asexual Generic Names in <I
doi:10.5598/imafungus.2018.09.01.06 IMA FUNGUS · 9(1): 75–89 (2018) Competing sexual and asexual generic names in Pucciniomycotina and ARTICLE Ustilaginomycotina (Basidiomycota) and recommendations for use M. Catherine Aime1, Lisa A. Castlebury2, Mehrdad Abbasi1, Dominik Begerow3, Reinhard Berndt4, Roland Kirschner5, Ludmila Marvanová6, Yoshitaka Ono7, Mahajabeen Padamsee8, Markus Scholler9, Marco Thines10, and Amy Y. Rossman11 1Purdue University, Department of Botany and Plant Pathology, West Lafayette, IN 47901, USA; corresponding author e-mail: maime@purdue. edu 2Mycology & Nematology Genetic Diversity and Biology Laboratory, USDA-ARS, Beltsville, MD 20705, USA 3Ruhr-Universität Bochum, Geobotanik, ND 03/174, D-44801 Bochum, Germany 4ETH Zürich, Plant Ecological Genetics, Universitätstrasse 16, 8092 Zürich, Switzerland 5Department of Biomedical Sciences and Engineering, National Central University, 320 Taoyuan City, Taiwan 6Czech Collection of Microoorganisms, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic 7Faculty of Education, Ibaraki University, Mito, Ibaraki 310-8512, Japan 8Systematics Team, Manaaki Whenua Landcare Research, Auckland 1072, New Zealand 9Staatliches Museum f. Naturkunde Karlsruhe, Erbprinzenstr. 13, D-76133 Karlsruhe, Germany 10Senckenberg Gesellschaft für Naturforschung, Frankfurt (Main), Germany 11Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR 97333, USA Abstract: With the change to one scientific name for pleomorphic fungi, generic names typified by sexual and Key words: asexual morphs have been evaluated to recommend which name to use when two names represent the same genus Basidiomycetes and thus compete for use. In this paper, generic names in Pucciniomycotina and Ustilaginomycotina are evaluated pleomorphic fungi based on their type species to determine which names are synonyms. Twenty-one sets of sexually and asexually taxonomy typified names in Pucciniomycotina and eight sets in Ustilaginomycotina were determined to be congeneric and protected names compete for use. -
In Vitro Evaluation of Plant Extracts and Bio- Agents Against Alternaria
International Journal of Chemical Studies 2018; 6(2): 504-507 P-ISSN: 2349–8528 E-ISSN: 2321–4902 IJCS 2018; 6(2): 504-507 In vitro evaluation of plant extracts and bio- © 2018 IJCS Received: 04-01-2018 agents against Alternaria tenuissima (Fr.) keissl Accepted: 05-02-2018 causing leaf blight of kodo millet K Hariprasad Department of Plant Pathology, UAS, GKVK, Bengaluru - 65 K Hariprasad, A Nagaraja, Suresh Patil and Rakesha *Project Coordinating Unit (Small Millets), ICAR, GKVK, Abstract Bengaluru, Karnataka, India Kodo millet (Paspalum scrobiculatum L.) is nutritionally important millet. Leaf blight has been a major production constraint and fungicidal sprays for the management of any disease on this crop may not be A Nagaraja economically viable and feasible as the farmers cultivating the crop are resource poor and the crop is less Department of Plant Pathology, remunerative, but is important in tribal and rainfed agriculture. Hence, botanicals and bio-agents were UAS, GKVK, Bengaluru - 65 *Project Coordinating Unit evaluated in vitro against Alternaria tenuissima the cause of leaf blight. Ten plant extracts and 14 bio- (Small Millets), ICAR, GKVK, agents were evaluated following dual culture. The results revealed 100 per cent inhibition of the mycelial Bengaluru, Karnataka, India growth of A. tenuissima by Eucalyptus sp. and Clerodendron infortunatum at 7.5 and 10.0 per cent concentrations. Among the fungal bio control agents tested, maximum inhibition (100 %) was recorded Suresh Patil in Trichoderma harzianum (NBAIR), followed by T. viride (81.38 %); whereas the bacterial bio agent Department of Plant Pathology, Bacillus amyloliquefaciens (P-42) showed only 77.40 % inhibition of mycelial growth revealing that UAS, GKVK, Bengaluru - 65 fungal antagonists were more effective than the bacterial antagonists. -
<I>Mucorales</I>
Persoonia 30, 2013: 57–76 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X666259 The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies K. Hoffmann1,2, J. Pawłowska3, G. Walther1,2,4, M. Wrzosek3, G.S. de Hoog4, G.L. Benny5*, P.M. Kirk6*, K. Voigt1,2* Key words Abstract The Mucorales (Mucoromycotina) are one of the most ancient groups of fungi comprising ubiquitous, mostly saprotrophic organisms. The first comprehensive molecular studies 11 yr ago revealed the traditional Mucorales classification scheme, mainly based on morphology, as highly artificial. Since then only single clades have been families investigated in detail but a robust classification of the higher levels based on DNA data has not been published phylogeny yet. Therefore we provide a classification based on a phylogenetic analysis of four molecular markers including the large and the small subunit of the ribosomal DNA, the partial actin gene and the partial gene for the translation elongation factor 1-alpha. The dataset comprises 201 isolates in 103 species and represents about one half of the currently accepted species in this order. Previous family concepts are reviewed and the family structure inferred from the multilocus phylogeny is introduced and discussed. Main differences between the current classification and preceding concepts affects the existing families Lichtheimiaceae and Cunninghamellaceae, as well as the genera Backusella and Lentamyces which recently obtained the status of families along with the Rhizopodaceae comprising Rhizopus, Sporodiniella and Syzygites. Compensatory base change analyses in the Lichtheimiaceae confirmed the lower level classification of Lichtheimia and Rhizomucor while genera such as Circinella or Syncephalastrum completely lacked compensatory base changes. -
Molecular Identification of Fungi
Molecular Identification of Fungi Youssuf Gherbawy l Kerstin Voigt Editors Molecular Identification of Fungi Editors Prof. Dr. Youssuf Gherbawy Dr. Kerstin Voigt South Valley University University of Jena Faculty of Science School of Biology and Pharmacy Department of Botany Institute of Microbiology 83523 Qena, Egypt Neugasse 25 [email protected] 07743 Jena, Germany [email protected] ISBN 978-3-642-05041-1 e-ISBN 978-3-642-05042-8 DOI 10.1007/978-3-642-05042-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2009938949 # Springer-Verlag Berlin Heidelberg 2010 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany, kindly supported by ‘leopardy.com’ Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedicated to Prof. Lajos Ferenczy (1930–2004) microbiologist, mycologist and member of the Hungarian Academy of Sciences, one of the most outstanding Hungarian biologists of the twentieth century Preface Fungi comprise a vast variety of microorganisms and are numerically among the most abundant eukaryotes on Earth’s biosphere. -
Forming Yeast Genus Sporobolomyces Based on 18S Rdna Sequences
International Journal of Systematic and Evolutionary Microbiology (2000), 50, 1373–1380 Printed in Great Britain Phylogenetic analysis of the ballistoconidium- forming yeast genus Sporobolomyces based on 18S rDNA sequences Makiko Hamamoto and Takashi Nakase Author for correspondence: Makiko Hamamoto. Tel: j81 48 467 9560. Fax: j81 48 462 4617. e-mail: hamamoto!jcm.riken.go.jp Japan Collection of The 18S rDNA nucleotide sequences of 25 Sporobolomyces species and five Microorganisms, The Sporidiobolus species were determined. Those of Sporobolomyces dimmenae Institute of Physical and T T Chemical Research (RIKEN), JCM 8762 , Sporobolomyces ruber JCM 6884 , Sporobolomyces sasicola JCM Wako, Saitama 351-0198, 5979T and Sporobolomyces taupoensis JCM 8770T showed the presence of Japan intron-like regions with lengths of 1586, 324, 322 and 293 nucleotides, respectively, which were presumed to be group I introns. A total of 63 18S rDNA nucleotide sequences was analysed, including 33 published reference sequences. Sporobolomyces species and the other basidiomycetes species were distributed throughout the phylogenetic tree. The resulting phylogeny indicated that Sporobolomyces is polyphyletic. Sporobolomyces species were mainly divided into four groups within the Urediniomycetes. The groups are designated as the Sporidiales, Agaricostilbum/Bensingtonia, Erythrobasidium and subbrunneus clusters. The last group, comprising four species, Sporobolomyces coprosmicola, Sporobolomyces dimmenae, Sporobolomyces linderae and Sporobolomyces subbrunneus, forms a new and distinct cluster in the phylogenetic tree in this study. Keywords: ballistoconidium-forming yeasts, phylogeny, rDNA, Sporobolomyces INTRODUCTION myces cerevisiae) of 49 ballistoconidium-forming yeasts and related non-ballistoconidium-forming Members of the genus Sporobolomyces (Kluyver & van yeasts. This work indicated that Sporobolomyces Niel, 1924) are anamorphic basidiomycetous yeasts, species were widely dispersed on the phylogenetic tree. -
Identification and Characterization of Alternaria Species Causing Leaf Spot
Eur J Plant Pathol (2017) 149:401–413 DOI 10.1007/s10658-017-1190-0 Identification and characterization of Alternaria species causing leaf spot on cabbage, cauliflower, wild and cultivated rocket by using molecular and morphological features and mycotoxin production Ilenia Siciliano & Giovanna Gilardi & Giuseppe Ortu & Ulrich Gisi & Maria Lodovica Gullino & Angelo Garibaldi Accepted: 22 February 2017 /Published online: 11 March 2017 # Koninklijke Nederlandse Planteziektenkundige Vereniging 2017 Abstract Alternaria species are common pathogens of Keywords Crucifers . Toxins . Leaf spot . Tenuazonic fruit and vegetables able to produce secondary metabo- acid lites potentially affecting human health. Twenty-nine isolates obtained from cabbage, cauliflower, wild and cultivated rocket were characterized and identified Introduction based on sporulation pattern and virulence; the phylo- β genetic analysis was based on the -tubulin gene. Most Alternaria species are saprophytes and ubiquitous Isolates were identified as A. alternata, A. tenuissima, in the environment, however some are plant pathogenic, A. arborescens, A. brassicicola and A. japonica. inducing diseases on a large variety of economically Pathogenicity was evaluated on plants under greenhouse important crops like cereals, oil-crops, vegetables and conditions. Two isolates showed low level of virulence fruits (Pitt and Hocking, 1997). Most Alternaria spp. on cultivated rocket while the other isolates showed produce chains of conidia with transverse and longitu- medium or high level of virulence. Isolates were also dinal septa with a tapering apical cell. Conidial size, characterized for their mycotoxin production on a mod- presence and size of a beak, the pattern of catenation ified Czapek-Dox medium. Production of the five and longitudinal and transverse septation are key taxo- Alternaria toxins, tenuazonic acid, alternariol, nomic features for this genus (Joly 1964; Ellis 1971 and alternariol monomethyl ether, altenuene and tentoxin 1976, Simmons 1992). -
Enzymatic Effect of Different Alternaria Tenuissima Tic Effect of Different
Bulletin of Environment, Pharmacology and Life Sciences Bull. Env. Pharmacol. Life Sci., Vol 6 Special issue [2] 2017: 422-427 ©2017 Academy for Environment and Life Sciences, India Online ISSN 2277-1808 Journal’s URL:http://www.bepls.com CODEN: BEPLAD Global Impact Factor 0.533 Universal Impact Factor 0.9804 NAAS Rating 4.95 FULL LENGTH ARTICLE OPEN ACCESS Enzymatic Effect of Different Host Defense Induction against Alternaria tenuissima (Kunze ex pers.) Wiltshire causing Dieback Disease of Chilli C.S. Azad1*, A. Kumar1, G. Chand1 and R.D. Ranjan2 1Department of Plant Pathology, 2Department of Plant Breeding and Genetics, Bihar Agricultural University, Sabour, Bhagalpur-813210, India *Email: [email protected] ABSTRACT Dieback disease, caused by Alternaria tenuissima, (Kunze ex pers.) Wiltshire, is one of the most important disease that affecting all the plant parts of chilli. Among different methods of bioagent application, combination of both soil and root dip application was significantly superior over soil and root dip application. The accumulation of enzymes i.e. polyphenol oxidase (PPO), peroxidase (PO) and total phenol significantly increased upto 72 hours. Among bioagents highest significantly increase in PPO, PO and total phenol activity were recorded in Trichoderma harzianum PBAT-21 + Pseudomonas fluorescens PBAP-27 i.e. 0.034, 0.381 and 8.58 µmol/min/mg protein respectively. The no. of spot/leaf (2.33%), no. of infected leaves/plant (1.44%) and disease severity (13.33%) of dieback disease of chilli were minimum in combination of soil and root dip inoculation of bioagents Trichoderma harzianum PBAT-21 and Pseudomonas fluorescens PBAP-27 as compare to control. -
Isolation and Identification of Fungi from Leaves Infected with False Mildew on Safflower Crops in the Yaqui Valley, Mexico
Isolation and identification of fungi from leaves infected with false mildew on safflower crops in the Yaqui Valley, Mexico Eber Addi Quintana-Obregón 1, Maribel Plascencia-Jatomea 1, Armando Burgos-Hérnandez 1, Pedro Figueroa-Lopez 2, Mario Onofre Cortez-Rocha 1 1 Departamento de Investigación y Posgrado en Alimentos, Universidad de Sonora, Blvd. Luis Encinas y Rosales s/n, Colonia Centro. C.P. 83000 Hermosillo, Sonora, México. 2 Campo Experimental Norman E. Borlaug-INIFAP. C. Norman Borlaug Km.12 Cd. Obregón, Sonora C.P. 85000 3 1 0 2 Aislamiento e identificación de hongos de las hojas infectadas con la falsa cenicilla , 7 en cultivos de cártamo en el Valle del Yaqui, México 2 - 9 1 Resumen. La falsa cenicilla es una enfermedad que afecta seriamente los cultivos de cártamo en : 7 3 el Valle del Yaqui, México, y es causada por la infección de un hongo perteneciente al género A Ramularia. En el presente estudio, un hongo aislado de hojas contaminadas fue cultivado bajo Í G diferentes condiciones de crecimiento con la finalidad de estudiar su desarrollo micelial y O L producción de esporas, determinándose que el medio sólido de , 18 C de O Septoria tritici ° C I incubación y fotoperiodos de 12 h luz-oscuridad, fueron las condiciones más adecuadas para el M desarrollo del hongo. Este aislamiento fue identificado morfológicamente como Ramularia E D , pero genómicamente como , por lo que no se puede cercosporelloides Cercosporella acroptili A aún concluir que especie causa esta enfermedad. Adicionalmente, en la periferia de las N A C infecciones estudiadas se detectó la presencia de Alternaria tenuissima y Cladosporium I X cladosporioides.