Subcutaneous Phycomycetosis
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The Resurgence of Mucormycosis in the Covid-19 Era – a Review
ISSN: 2687-8410 DOI: 10.33552/ACCS.2021.03.000551 Archives of Clinical Case Studies Mini Review Copyright © All rights are reserved by Kratika Mishra The Resurgence of Mucormycosis in the Covid-19 Era – A Review Amit Bhardwaj1, Kratika Mishra2*, Shivani Bhardwaj3, Anuj Bhardwaj4 1Department of Orthodontics and Dentofacial Orthopaedics, Modern Dental College and Research Centre, Indore, India 2Department of Orthodontics and Dentofacial Orthopaedics, Index Institute of Dental Sciences, Indore, Madhya Pradesh, India 3Department of Prosthodontics, College of Dental Sciences, Rau, Madhya Pradesh, India 4Department of Conservative Dentistry and Endodontics, College of Dental Sciences, India *Corresponding author: Received Date: June 7, 2021 Kratika Mishra, Department of Orthodontics and Published Date: June 25, 2021 Dentofacial Orthopaedics, Index Institute of Dental Sciences, Indore, Madhya Pradesh, India. Abstract Mucormycosis (MCM) is a life-threatening infection that carries high mortality rates with devastating disease symptoms and diverse clinical manifestations. This article briefly explains clinical manifestations and risk factors and focuses on putative virulence traits associated with mucormycosis, mainly in the group of diabetic ketoacidotic patients, immunocompromised patients. The diagnosis requires the combination of various clinical data and the isolation in culture of the fungus from clinical samples. Treatment of mucormycosis requires a rapid diagnosis, correction of predisposing factors, surgical resection, debridement and -
Resolving the Mortierellaceae Phylogeny Through Synthesis of Multi-Gene Phylogenetics and Phylogenomics
Lawrence Berkeley National Laboratory Recent Work Title Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics. Permalink https://escholarship.org/uc/item/25k8j699 Journal Fungal diversity, 104(1) ISSN 1560-2745 Authors Vandepol, Natalie Liber, Julian Desirò, Alessandro et al. Publication Date 2020-09-16 DOI 10.1007/s13225-020-00455-5 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Fungal Diversity https://doi.org/10.1007/s13225-020-00455-5 Resolving the Mortierellaceae phylogeny through synthesis of multi‑gene phylogenetics and phylogenomics Natalie Vandepol1 · Julian Liber2 · Alessandro Desirò3 · Hyunsoo Na4 · Megan Kennedy4 · Kerrie Barry4 · Igor V. Grigoriev4 · Andrew N. Miller5 · Kerry O’Donnell6 · Jason E. Stajich7 · Gregory Bonito1,3 Received: 17 February 2020 / Accepted: 25 July 2020 © MUSHROOM RESEARCH FOUNDATION 2020 Abstract Early eforts to classify Mortierellaceae were based on macro- and micromorphology, but sequencing and phylogenetic studies with ribosomal DNA (rDNA) markers have demonstrated conficting taxonomic groupings and polyphyletic genera. Although some taxonomic confusion in the family has been clarifed, rDNA data alone is unable to resolve higher level phylogenetic relationships within Mortierellaceae. In this study, we applied two parallel approaches to resolve the Mortierel- laceae phylogeny: low coverage genome (LCG) sequencing and high-throughput, multiplexed targeted amplicon sequenc- ing to generate sequence data for multi-gene phylogenetics. We then combined our datasets to provide a well-supported genome-based phylogeny having broad sampling depth from the amplicon dataset. Resolving the Mortierellaceae phylogeny into monophyletic genera resulted in 13 genera, 7 of which are newly proposed. Low-coverage genome sequencing proved to be a relatively cost-efective means of generating a high-confdence phylogeny. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
<I>Mucorales</I>
Persoonia 30, 2013: 57–76 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X666259 The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies K. Hoffmann1,2, J. Pawłowska3, G. Walther1,2,4, M. Wrzosek3, G.S. de Hoog4, G.L. Benny5*, P.M. Kirk6*, K. Voigt1,2* Key words Abstract The Mucorales (Mucoromycotina) are one of the most ancient groups of fungi comprising ubiquitous, mostly saprotrophic organisms. The first comprehensive molecular studies 11 yr ago revealed the traditional Mucorales classification scheme, mainly based on morphology, as highly artificial. Since then only single clades have been families investigated in detail but a robust classification of the higher levels based on DNA data has not been published phylogeny yet. Therefore we provide a classification based on a phylogenetic analysis of four molecular markers including the large and the small subunit of the ribosomal DNA, the partial actin gene and the partial gene for the translation elongation factor 1-alpha. The dataset comprises 201 isolates in 103 species and represents about one half of the currently accepted species in this order. Previous family concepts are reviewed and the family structure inferred from the multilocus phylogeny is introduced and discussed. Main differences between the current classification and preceding concepts affects the existing families Lichtheimiaceae and Cunninghamellaceae, as well as the genera Backusella and Lentamyces which recently obtained the status of families along with the Rhizopodaceae comprising Rhizopus, Sporodiniella and Syzygites. Compensatory base change analyses in the Lichtheimiaceae confirmed the lower level classification of Lichtheimia and Rhizomucor while genera such as Circinella or Syncephalastrum completely lacked compensatory base changes. -
A Case Study on Subcutaneous Zygomycosis with Ulcer
Int.J.Curr.Microbiol.App.Sci (2013) 2(10): 448-451 ISSN: 2319-7706 Volume 2 Number 10 (2013) pp. 448-451 http://www.ijcmas.com Case report A Case Study on Subcutaneous zygomycosis with ulcer P.Hema Prakash Kumari1, M. SrinivasaRao2, S. Subbarayudu3, Y. Saritha4 and Amrutha Kar5 1,3,4,5Department of Microbiology ASRAM Medical College Eluru, A.P Pin 534004, India 2Department of Pediatrics ASRAM Medical College Eluru, A.P Pin 534004, India *Corresponding author A B S T R A C T K e y w o r d s Subcutaneous mycosis due to Basidiobolus ranarum is endemic in south Subcutaneous India. We hereby report a case of subcutaneous zygomycosis in a 6 months phycomycosis; old female child who presented with a painless, non-tender swelling Basidiobolus progressed to ulcer on the thigh. ranarum; Introduction Routine investigations were normal and x A 6 month female child was brought to ray left thigh showed soft tissue swelling. pediatric department with h/o gradually Tests for HIV negative, swabs were sent increasing painless ulcerated swelling over for bacterial and fungal culture. Bacterial the left thigh. There was history of insect culture was sterile and a 10% potassium bite 4 months ago. The swelling was hydroxide wet mount revealed broad, gradually increasing since then and irregular aseptate hyphae. Growth on progressed to ulcer formation covered by Sabouraud s dextrose agar after 3 days of eschar. incubation at 25 °C showed creamy brown, centrally heaped up, radially folded No discharge was observed. On cutaneous colonies with satellite colonies on the examination there was a single firm, well periphery (Figure 2). -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Syzygites Megalocarpus (Mucorales, Zygomycetes) in Illinois
Transactions of the Illinois State Academy of Science received 12/8/98 (1999), Volume 92, 3 and 4, pp. 181-190 accepted 6/2/99 Syzygites megalocarpus (Mucorales, Zygomycetes) in Illinois R. L. Kovacs1 and W. J. Sundberg2 Department of Plant Biology, Mail Code 6509 Southern Illinois University at Carbondale Carbondale, Illinois 62901-6509 1Current Address: Salem Academy; 942 Lancaster Dr. NE; Salem, OR 97301 2Corresponding Author ABSTRACT Syzygites megalocarpus Ehrenb.: Fr. (Mucorales, Zygomycetes), which occurs on fleshy fungi and was previously unreported from Illinois, has been collected from five counties- -Cook, Gallatin, Jackson, Union, and Williamson. In Illinois, S. megalocarpus occurs on 23 species in 18 host genera. Fresh host material collected in the field and appearing uninfected can develop S. megalocarpus colonies after incubation in the laboratory. The ability of S. megalocarpus to colonize previously uninfected hosts was demonstrated by inoculation studies in the laboratory. Because the known distribution of potential hosts in Illinois is much broader than documented here, further attention to S. megalocarpus should more fully elucidate the host and geographic ranges of this Zygomycete in the state. Using light and scanning electron microscopy, the heretofore unmeasured warts on the zygosporangium were 4-6 µm broad and 5-8 µm high, providing additional informa- tion for circumscription of this genus. INTRODUCTION Syzygites (Mucorales, Zygomycetes) is a presumptive mycoparasite that occurs on fleshy fungi (Figs. 1-2) and contains a single species, S. megalocarpus Ehrenb.: Fr. (Hesseltine 1957). It is homothallic and forms erect sporangiophores which are dichotomously branched and bear columellate, multispored sporangia at their apices (Fries 1832, Hes- seltine 1957, Benny and O'Donnell 1978, O'Donnell 1979). -
Isolation of Mucorales from Biological Environment and Identification of Rhizopus Among the Isolates Using PCR- RFLP
Journal of Shahrekord University of Medical Sciences doi:10.34172/jsums.2019.17 2019;21(2):98-103 http://j.skums.ac.ir Original Article Isolation of Mucorales from biological environment and identification of Rhizopus among the isolates using PCR- RFLP Mahboobeh Madani1* ID , Mohammadali Zia2 ID 1Department of Microbiology, Falavarjan Branch, Islamic Azad University, Isfahan, Iran 2Department of Basic Science, (Khorasgan) Isfahan Branch, Islamic Azad University, Isfahan, Iran *Corresponding Author: Mahboobeh Madani, Tel: + 989134097629, Email: [email protected] Abstract Background and aims: Mucorales are fungi belonging to the category of Zygomycetes, found much in nature. Culture-based methods for clinical samples are often negative, difficult and time-consuming and mainly identify isolates to the genus level, and sometimes only as Mucorales. Therefore, applying fast and accurate diagnosis methods such as molecular approaches seems necessary. This study aims at isolating Mucorales for determination of Rhizopus genus between the isolates using molecular methods. Methods: In this descriptive observational study, a total of 500 samples were collected from air and different surfaces and inoculated on Sabouraud Dextrose Agar supplemented with chloramphenicol. Then, the fungi belonging to Mucorales were identified and their pure culture was provided. DNA extraction was done using extraction kit and the chloroform method. After amplification, the samples belonging to Mucorales were identified by observing 830 bp bands. For enzymatic digestion, enzyme BmgB1 was applied for identification of Rhizopus species by formation of 593 and 235 bp segments. Results: One hundred pure colonies belonging to Mucorales were identified using molecular methods and after enzymatic digestion, 21 isolates were determined as Rhizopus species. -
Phylogeny of the Zygomycetous Family Mortierellaceae Inferred From
Data Partitions, Bayesian Analysis and Phylogeny of the Zygomycetous Fungal Family Mortierellaceae, Inferred from Nuclear Ribosomal DNA Sequences Tama´s Petkovits1,La´szlo´ G. Nagy1, Kerstin Hoffmann2,3, Lysett Wagner2,3, Ildiko´ Nyilasi1, Thasso Griebel4, Domenica Schnabelrauch5, Heiko Vogel5, Kerstin Voigt2,3, Csaba Va´gvo¨ lgyi1, Tama´s Papp1* 1 Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary, 2 Jena Microbial Resource Collection, Department of Microbiology and Molecular Biology, School of Biology and Pharmacy, Institute of Microbiology, University of Jena, Jena, Germany, 3 Department of Molecular and Applied Microbiology, Leibniz–Institute for Natural Product Research and Infection Biology (HKI), Jena, Germany, 4 Department of Bioinformatics, School of Mathematics and Informatics, Institute of Informatics, University of Jena, Jena, Germany, 5 Department of Entomology, Max Planck Institute for Chemical Ecology, Jena, Germany Abstract Although the fungal order Mortierellales constitutes one of the largest classical groups of Zygomycota, its phylogeny is poorly understood and no modern taxonomic revision is currently available. In the present study, 90 type and reference strains were used to infer a comprehensive phylogeny of Mortierellales from the sequence data of the complete ITS region and the LSU and SSU genes with a special attention to the monophyly of the genus Mortierella. Out of 15 alternative partitioning strategies compared on the basis of Bayes factors, the one with the highest number of partitions was found optimal (with mixture models yielding the best likelihood and tree length values), implying a higher complexity of evolutionary patterns in the ribosomal genes than generally recognized. Modeling the ITS1, 5.8S, and ITS2, loci separately improved model fit significantly as compared to treating all as one and the same partition. -
Gastrointestinal Basidiobolomycosis, a Rare and Under-Diagnosed Fungal Infection in Immunocompetent Hosts: a Review Article
IJMS Vol 40, No 2, March 2015 Review Article Gastrointestinal Basidiobolomycosis, a Rare and Under-diagnosed Fungal Infection in Immunocompetent Hosts: A Review Article Bita Geramizadeh1,2, MD; Mina Abstract 2 2 Heidari , MD; Golsa Shekarkhar , MD Gastrointestinal Basidiobolomycosis (GIB) is an unusual, rare, but emerging fungal infection in the stomach, small intestine, colon, and liver. It has been rarely reported in the English literature and most of the reported cases have been from US, Saudi Arabia, Kuwait, and Iran. In the last five years, 17 cases have been reported from one or two provinces in Iran, and it seems that it has been undiagnosed or probably unnoticed in other parts of the country. This article has Continuous In this review, we explored the English literature from 1964 Medical Education (CME) through 2013 via PubMed, Google, and Google scholar using the credit for Iranian physicians following search keywords: and paramedics. They may 1) Basidiobolomycosis earn CME credit by reading 2) Basidiobolus ranarum this article and answering the 3) Gastrointestinal Basidiobolomycosis questions on page 190. In this review, we attempted to collect all clinical, pathological, and radiological findings of the presenting patients; complemented with previous experiences regarding the treatment and prognosis of the GIB. Since 1964, only 71 cases have been reported, which will be fully described in terms of clinical presentations, methods of diagnosis and treatment as well as prognosis and follow up. Please cite this article as: Geramizadeh B, Heidari M, Shekarkhar G. Gastrointestinal Basidiobolomycosis, a Rare and Under-diagnosed Fungal Infection in Immunocompetent Hosts: A Review Article. Iran J Med Sci. -
Case Report of Subcutaneous Entomophthoromycosis with Retroperitoneal Invasion
RELATO DE CASO/CASE REPORT Revista da Sociedade Brasileira de Medicina Tropical 38(4):348-350, jul-ago, 2005 Case report of subcutaneous entomophthoromycosis with retroperitoneal invasion Relato de caso de entomoftoromicose subcutânea com invasão retroperitoneal Leonora Maciel de Souza Vianna1, 2, Marcus Vinícius Guimarães de Lacerda1 and Mário Augusto Pinto de Moraes1 ABSTRACT The authors describe a case of entomophthoromycosis in a previously healthy patient, who presented with an abscess in the right buttock. After surgical drainage it evolved into a retroperitoneal tumor. The patient improved clinically after resection of the mass and ketoconazole treatment. The histopathological analysis showed the Splendore-Hoeppli phenomenon, suggesting Basidiobolus ranarum infection, a zygomycosis generally restricted to the subcutaneous tissue, with rare gastrointestinal involvement. Key-words: Basidiobolus ranarum. Zygomycosis. Entomophthorales. Clinical features. Histopathology. Splendore-Hoeppli phenomenon. RESUMO Os autores descrevem um caso de entomoftoromicose em paciente previamente saudável, que apresentou abscesso em nádega direita, evoluindo, após drenagem cirúrgica, para tumoração retroperitoneal. Após ressecção da massa, o paciente obteve melhora clínica, em uso de cetoconazol. A análise histopatológica evidenciou fenômeno de Splendore-Hoeppli, sugerindo infecção por Basidiobolus ranarum, uma zigomicose geralmente restrita ao tecido subcutâneo, com raro comprometimento gastrintestinal. Palavras-chaves: Basidiobolus ranarum. Zigomicose. -
Mycology Proficiency Testing Program
Mycology Proficiency Testing Program Test Event Critique January 2014 Table of Contents Mycology Laboratory 2 Mycology Proficiency Testing Program 3 Test Specimens & Grading Policy 5 Test Analyte Master Lists 7 Performance Summary 11 Commercial Device Usage Statistics 13 Mold Descriptions 14 M-1 Stachybotrys chartarum 14 M-2 Aspergillus clavatus 18 M-3 Microsporum gypseum 22 M-4 Scopulariopsis species 26 M-5 Sporothrix schenckii species complex 30 Yeast Descriptions 34 Y-1 Cryptococcus uniguttulatus 34 Y-2 Saccharomyces cerevisiae 37 Y-3 Candida dubliniensis 40 Y-4 Candida lipolytica 43 Y-5 Cryptococcus laurentii 46 Direct Detection - Cryptococcal Antigen 49 Antifungal Susceptibility Testing - Yeast 52 Antifungal Susceptibility Testing - Mold (Educational) 54 1 Mycology Laboratory Mycology Laboratory at the Wadsworth Center, New York State Department of Health (NYSDOH) is a reference diagnostic laboratory for the fungal diseases. The laboratory services include testing for the dimorphic pathogenic fungi, unusual molds and yeasts pathogens, antifungal susceptibility testing including tests with research protocols, molecular tests including rapid identification and strain typing, outbreak and pseudo-outbreak investigations, laboratory contamination and accident investigations and related environmental surveys. The Fungal Culture Collection of the Mycology Laboratory is an important resource for high quality cultures used in the proficiency-testing program and for the in-house development and standardization of new diagnostic tests. Mycology Proficiency Testing Program provides technical expertise to NYSDOH Clinical Laboratory Evaluation Program (CLEP). The program is responsible for conducting the Clinical Laboratory Improvement Amendments (CLIA)-compliant Proficiency Testing (Mycology) for clinical laboratories in New York State. All analytes for these test events are prepared and standardized internally.