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Biochemical Thermodynamics
Biochemical Thermodynamics Biochemical Thermodynamics By Juan S. Jiménez Biochemical Thermodynamics By Juan S. Jiménez This book first published 2020 Cambridge Scholars Publishing Lady Stephenson Library, Newcastle upon Tyne, NE6 2PA, UK British Library Cataloguing in Publication Data A catalogue record for this book is available from the British Library Copyright © 2020 by Juan S. Jiménez All rights for this book reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, without the prior permission of the copyright owner. ISBN (10): 1-5275-5359-0 ISBN (13): 978-1-5275-5359-0 To the memory of Brígida and Francisco Jiménez CONTENTS PREFACE ..................................................................................................... x CHAPTER 1 .................................................................................................. 1 INTRODUCTION 1.1 The Atomic Theory of John Dalton and the Hypothesis of Amedeo Avogadro 1.2 The Mole and Avogadro’s Number 1.3 The ideal gas model 1.4 The Periodic Table and Initial Atomic Theories 1.5 The Hydrogen Atom and the Schrödinger Equation 1.6 Atomic Structure 1.7 Molecules CHAPTER 2 ................................................................................................ 35 ENTROPY 2.1 Systems, Properties and States 2.2 The First Law of Thermodynamics 2.3 Enthalpy 2.4 Reversible changes 2.5 The Second Law of Thermodynamics 2.6 A Particle in a One-dimensional Box 2.7 Quantum States 2.8 The Boltzmann Equation CHAPTER 3 ................................................................................................ 63 THE CHEMICAL EQUILIBRIUM 3.1 The Gibbs Function 3.2 The Chemical Potential 3.3 Chemical Equilibrium 3.4 Model Systems 3.5 The Equilibrium Constant for Chemical Reactions between Gases. -
Amedeo Avogadro
Amedeo Avogadro ALSO LISTED IN Physicists FAMOUS AS Chemist and Physicist NATIONALITY Italian Famous Italian Men RELIGION Roman Catholic BORN ON 09 August 1776 AD Famous 9th August Birthdays ZODIAC SIGN Leo Leo Men BORN IN Turin, Italy DIED ON 09 July 1856 AD PLACE OF DEATH Turin, Italy FATHER Filippo Avogadro MOTHER Anna Maria Vercellone SPOUSE: Felicita Mazzé Lorenzo Romano Amedeo Carlo Avogadro de Quaregna e di Cerreto, more popularly known as Amedeo Avogadro was born on August 9, 1776, in Turin, Italy. He was a gifted physicist and chemist who proposed the molecular theory, which is more popularly known as ‘Avogadro’s Law’. Although he earned a doctorate in ecclesiastical law, he developed a passion for studying mathematics and physics. He then gave up his career in law and pursued a career teaching natural physics at the Royal College of Vercelli. Years later, he was offered the chair of mathematical physics at the University of Turin. Avogadro conducted experiments in both physics and chemistry using mathematics as a basis for his findings. His hypothesis, known as the ‘Avogadro’s Law’ is recognized all over the world. He also published many works during his lifetime. The number 6.02214199 x 10^23 is named as Avogadro’s number to honor him for his contribution in molecular theory. Read on to know more about this great physicist and chemist. Read more at http://www.thefamouspeople.com/profiles/amadeo-avogadro- 532.php#09s5lE6QjEOdfSro.99 Career After studying philosophy in 1789, Amedeo Avogadro graduated in jurisprudence in 1792 and earned his doctorate in ecclesiastical law in 1796. -
Chemistry in Italy During Late 18Th and 19Th Centuries
CHEMISTRY IN ITALY DURING LATE 18TH AND 19TH CENTURIES Ignazio Renato Bellobono, CSci, CChem, FRSC LASA, Department of Physics, University of Milan. e-mail add ress : i.bell obon o@ti scali.it LASA, Dept.Dept. ofPhysics, Physics, University of Milan The birth of Electrochemistry Luigi Galvani, Alessandro Volta, and Luigi Valentino Brugnatelli From Chemistry to Radiochemistry The birth of Chemistry and Periodic Table Amedeo Avogadro and Stanislao Cannizzaro Contributions to Organic Chemistry LASA, Dept.Dept. ofPhysics, Physics, University of Milan 1737 At the Faculty of Medicine of the Bologna University, the first chair of Chemistry is establishedestablished,,andandassigned to Jacopo Bartolomeo BECCARI (1692-1766). He studied phosphorescence and the action of light on silver halides 1776 In some marshes of the Lago Maggiore, near AngeraAngera,, Alessandro VOLTA ((17451745--18271827),),hi gh school teacher of physics in Como, individuates a flammable gas, which he calls aria infiammabile. Methane is thus discovereddiscovered.. Two years laterlater,,heheis assignedassigned,,asas professor of experimental phihysicscs,,toto the UiUniversi ty of PiPavia LASA, DtDept. of PhPhys icscs,, University of Milan 1778 In aletter a letter to Horace Bénédict de Saussure, aaSwissSwiss naturalist, VOLTA introduces, beneath that of electrical capacitycapacity,, the fundamental concept of tensione elettrica (electrical tension), exactly the name that CITCE recommended for the difference of potential in an electrochemical cell. 17901790--17911791 VOLTA anticipatesanticipates,,bybyabout 10 yearsyears,,thethe GAYGAY--LUSSACLUSSAC linear de ppyendency of gas volume on tem pp,erature, at constant pressurepressure,,andandafew a fewyears later ((17951795)) anticipatesanticipates,,byby about 6years 6 years,,thethe soso--calledcalled John Dalton’s rules ((18011801))ononvapour pressure LASA, Dept.Dept. -
Physics/9803005
UWThPh-1997-52 27. Oktober 1997 History and outlook of statistical physics 1 Dieter Flamm Institut f¨ur Theoretische Physik der Universit¨at Wien, Boltzmanngasse 5, 1090 Vienna, Austria Email: [email protected] Abstract This paper gives a short review of the history of statistical physics starting from D. Bernoulli’s kinetic theory of gases in the 18th century until the recent new developments in nonequilibrium kinetic theory in the last decades of this century. The most important contributions of the great physicists Clausius, Maxwell and Boltzmann are sketched. It is shown how the reversibility and the recurrence paradox are resolved within Boltzmann’s statistical interpretation of the second law of thermodynamics. An approach to classical and quantum statistical mechanics is outlined. Finally the progress in nonequilibrium kinetic theory in the second half of this century is sketched starting from the work of N.N. Bogolyubov in 1946 up to the progress made recently in understanding the diffusion processes in dense fluids using computer simulations and analytical methods. arXiv:physics/9803005v1 [physics.hist-ph] 4 Mar 1998 1Paper presented at the Conference on Creativity in Physics Education, on August 23, 1997, in Sopron, Hungary. 1 In the 17th century the physical nature of the air surrounding the earth was es- tablished. This was a necessary prerequisite for the formulation of the gas laws. The invention of the mercuri barometer by Evangelista Torricelli (1608–47) and the fact that Robert Boyle (1627–91) introduced the pressure P as a new physical variable where im- portant steps. Then Boyle–Mariotte’s law PV = const. -
Transitions Still to Be Made Philip Ball
impacts Transitions still to be made Philip Ball A collection of many particles all interacting according to simple, local rules can show behaviour that is anything but simple or predictable. Yet such systems constitute most of the tangible Universe, and the theories that describe them continue to represent one of the most useful contributions of physics. hysics in the twentieth century will That such a versatile discipline as statisti- probably be remembered for quantum cal physics should have remained so well hid- Pmechanics, relativity and the Standard den that only aficionados recognize its Model of particle physics. Yet the conceptual importance is a puzzle for science historians framework within which most physicists to ponder. (The topic has, for example, in operate is not necessarily defined by the first one way or another furnished 16 Nobel of these and makes reference only rarely to the prizes in physics and chemistry.) Perhaps it second two. The advances that have taken says something about the discipline’s place in cosmology, high-energy physics and humble beginnings, stemming from the quantum theory are distinguished in being work of Rudolf Clausius, James Clerk important not only scientifically but also Maxwell and Ludwig Boltzmann on the philosophically, and surely that is why they kinetic theory of gases. In attempting to have impinged so forcefully on the derive the gas laws of Robert Boyle and consciousness of our culture. Joseph Louis Gay-Lussac from an analysis of But the central scaffold of modern the energy and motion of individual physics is a less familiar construction — one particles, Clausius was putting thermody- that does not bear directly on the grand ques- namics on a microscopic basis. -
Kinetic Theory of Gases and Thermodynamics
Kinetic Theory of Gases Thermodynamics State Variables Kinetic Theory of Gases and Thermodynamics Zeroth law of thermodynamics Reversible and Irreversible processes Bedanga Mohanty First law of Thermodynamics Second law of Thermodynamics School of Physical Sciences Entropy NISER, Jatni, Orissa Thermodynamic Potential Course on Kinetic Theory of Gasses and Thermodynamics - P101 Third Law of Thermodynamics Phase diagram 1/112 Principles of thermodynamics, thermodynamic state, extensive/intensive variables. internal energy, Heat, work First law of thermodynamics, heat engines Second law of thermodynamics, entropy Thermodynamic potentials References: Thermodynamics, kinetic theory and statistical thermodynamics by Francis W. Sears, Gerhard L. Salinger Thermodynamics and introduction to thermostatistics, Herbert B. Callen Heat and Thermodynamics: an intermediate textbook by Mark W. Zemansky and Richard H. Dittman About 5-7 Tutorials One Quiz (10 Marks) and 2 Assignments (5 Marks) End Semester Exam (40 Marks) Course Content Suppose to be 12 lectures. Kinetic Theory of Gases Kinetic Theory of Gases Thermodynamics State Variables Zeroth law of thermodynamics Reversible and Irreversible processes First law of Thermodynamics Second law of Thermodynamics Entropy Thermodynamic Potential Third Law of Thermodynamics Phase diagram 2/112 internal energy, Heat, work First law of thermodynamics, heat engines Second law of thermodynamics, entropy Thermodynamic potentials References: Thermodynamics, kinetic theory and statistical thermodynamics by Francis W. Sears, Gerhard L. Salinger Thermodynamics and introduction to thermostatistics, Herbert B. Callen Heat and Thermodynamics: an intermediate textbook by Mark W. Zemansky and Richard H. Dittman About 5-7 Tutorials One Quiz (10 Marks) and 2 Assignments (5 Marks) End Semester Exam (40 Marks) Course Content Suppose to be 12 lectures. -
2. Classical Gases
2. Classical Gases Our goal in this section is to use the techniques of statistical mechanics to describe the dynamics of the simplest system: a gas. This means a bunch of particles, flying around in a box. Although much of the last section was formulated in the language of quantum mechanics, here we will revert back to classical mechanics. Nonetheless, a recurrent theme will be that the quantum world is never far behind: we’ll see several puzzles, both theoretical and experimental, which can only truly be resolved by turning on ~. 2.1 The Classical Partition Function For most of this section we will work in the canonical ensemble. We start by reformu- lating the idea of a partition function in classical mechanics. We’ll consider a simple system – a single particle of mass m moving in three dimensions in a potential V (~q ). The classical Hamiltonian of the system3 is the sum of kinetic and potential energy, p~ 2 H = + V (~q ) 2m We earlier defined the partition function (1.21) to be the sum over all quantum states of the system. Here we want to do something similar. In classical mechanics, the state of a system is determined by a point in phase space.Wemustspecifyboththeposition and momentum of each of the particles — only then do we have enough information to figure out what the system will do for all times in the future. This motivates the definition of the partition function for a single classical particle as the integration over phase space, 1 3 3 βH(p,q) Z = d qd pe− (2.1) 1 h3 Z The only slightly odd thing is the factor of 1/h3 that sits out front. -
Causal Relativistic Hydrodynamics of Conformal Fermi-Dirac Gases
Causal Relativistic Hydrodynamics of Conformal Fermi-Dirac Gases Milton Aguilar∗ and Esteban Calzettay Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de F´ısica. Buenos Aires, Argentina. CONICET - Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de F´ısica de Buenos Aires (IFIBA). Buenos Aires, Argentina. Abstract In this paper we address the derivation of causal relativistic hydrodynamics, formulated within the framework of Divergence Type Theories (DTTs), from kinetic theory for spinless particles obey- ing Fermi-Dirac statistics. The approach leads to expressions for the particle current and energy momentum tensor that are formally divergent, but may be given meaning through a process of reg- ularization and renormalization. We demonstrate the procedure through an analysis of the stability of an homogeneous anisotropic configuration. In the DTT framework, as in kinetic theory, these configurations are stable. By contrast, hydrodynamics as derived from the Grad approximation would predict that highly anisotropic configurations are unstable. arXiv:1701.01916v2 [hep-ph] 21 Mar 2017 ∗ E-mail me at: [email protected] y E-mail me at: [email protected] 1 I. INTRODUCTION The successful application of relativistic hydrodynamics [1{7] to the description of high energy heavy ion collisions [8{11] has led not only to a revival of this theory, but also to the demand of enlarging its domain of applicability to regimes where the system of interest is still away from local thermal equilibrium [12{14], and so the usual strategy of deriving hydrodynamics as an expansion in deviations from ideal behavior is not available. -
Avogadro's Constant
Avogadro's Constant Nancy Eisenmenger Question Artem, 8th grade How \Avogadro constant" was invented and how scientists calculated it for the first time? Answer What is Avogadro's Constant? • Avogadros constant, NA: the number of particles in a mole • mole: The number of Carbon-12 atoms in 0.012 kg of Carbon-12 23 −1 • NA = 6:02214129(27) × 10 mol How was Avogadro's Constant Invented? Avogadro's constant was invented because scientists were learning about measuring matter and wanted a way to relate the microscopic to the macroscopic (e.g. how many particles (atoms, molecules, etc.) were in a sample of matter). The first scientists to see a need for Avogadro's constant were studying gases and how they behave under different temperatures and pressures. Amedeo Avogadro did not invent the constant, but he did state that all gases with the same volume, pressure, and temperature contained the same number of gas particles, which turned out to be very important to the development of our understanding of the principles of chemistry and physics. The constant was first calculated by Johann Josef Loschmidt, a German scientist, in 1865. He actually calculated the Loschmidt number, a constant that measures the same thing as Avogadro's number, but in different units (ideal gas particles per cubic meter at 0◦C and 1 atm). When converted to the same units, his number was off by about a factor of 10 from Avogadro's number. That may sound like a lot, but given the tools he had to work with for both theory and experiment and the magnitude of the number (∼ 1023), that is an impressively close estimate. -
Visualizing the Kinetic Theory of Gases by Student-Created Computer Programs
Paper ID #18308 Visualizing the kinetic theory of gases by student-created computer programs Dr. Gunter¨ Bischof, Joanneum University of Applied Sciences Throughout his career, Dr. Gunter¨ Bischof has combined his interest in science and engineering appli- cation. He studied physics at the University of Vienna, Austria, and acquired industry experience as development engineer at Siemens Corporation. Currently he teaches Engineering Mathematics at Joan- neum University of Applied Sciences. His research interests focus on automotive engineering, materials physics, and on engineering education. Mr. Christian J. Steinmann, HM&S IT-Consulting Christian Steinmann has an engineer degree in mathematics from the Technical University Graz, where he focused on software quality and software development process assessment and improvement. He is man- ager of HM&S IT-Consulting and provides services for SPiCE/ISO 15504 and CMMI for development as a SEI-certified instructor. He performed more than 100 process assessments in software development de- partments for different companies in the finance, insurance, research, automotive, and automation sector. Currently, his main occupation is a consulting project for process improvement for safety related embed- ded software development for an automobile manufacturer. On Fridays, he is teaching computer science introductory and programming courses at Joanneum University of Applied Sciences in Graz, Austria. c American Society for Engineering Education, 2017 Visualizing the kinetic theory of gases by student-created computer programs Most introductory thermodynamics courses use the historical derivation of thermodynamics that relies on macroscopic properties of substances. Classical thermodynamics is a phenomenological theory; it studies the properties of a thermodynamic system without going into the mechanism of the observed phenomena. -
Statistical Physics Syllabus Lectures and Recitations
Graduate Statistical Physics Syllabus Lectures and Recitations Lectures will be held on Tuesdays and Thursdays from 9:30 am until 11:00 am via Zoom: https://nyu.zoom.us/j/99702917703. Recitations will be held on Fridays from 3:30 pm until 4:45 pm via Zoom. Recitations will begin the second week of the course. David Grier's office hours will be held on Mondays from 1:30 pm to 3:00 pm in Physics 873. Ankit Vyas' office hours will be held on Fridays from 1:00 pm to 2:00 pm in Physics 940. Instructors David G. Grier Office: 726 Broadway, room 873 Phone: (212) 998-3713 email: [email protected] Ankit Vyas Office: 726 Broadway, room 965B Email: [email protected] Text Most graduate texts in statistical physics cover the material of this course. Suitable choices include: • Mehran Kardar, Statistical Physics of Particles (Cambridge University Press, 2007) ISBN 978-0-521-87342-0 (hardcover). • Mehran Kardar, Statistical Physics of Fields (Cambridge University Press, 2007) ISBN 978- 0-521-87341-3 (hardcover). • R. K. Pathria and Paul D. Beale, Statistical Mechanics (Elsevier, 2011) ISBN 978-0-12- 382188-1 (paperback). Undergraduate texts also may provide useful background material. Typical choices include • Frederick Reif, Fundamentals of Statistical and Thermal Physics (Waveland Press, 2009) ISBN 978-1-57766-612-7. • Charles Kittel and Herbert Kroemer, Thermal Physics (W. H. Freeman, 1980) ISBN 978- 0716710882. • Daniel V. Schroeder, An Introduction to Thermal Physics (Pearson, 1999) ISBN 978- 0201380279. Outline 1. Thermodynamics 2. Probability 3. Kinetic theory of gases 4. -
The Mole and Avogadro's Number
The Mole and Avogadro's Number The name mole (German Mol) is attributed to Wilhelm Ostwald who introduced the concept in the year 1902. It is an abbreviation for molecule (German Molekül), which is in turn derived from Latin moles "mass, massive structure". (From the Wikipedia article on the mole unit.) A good site that introduces the mole concept and includes sample calculations and practice problems can be found here, from John Park's excellent ChemTeam site. For some interesting background on Avogadro's number, see here. By T.A. Furtsch, Tennessee Technological University, Cookeville, TN. Don't miss the interview with Count Amedeo Avogadro and his wife the Countess Felicita, located here (thanks to Kory Tonouchi, Roosevelt High, Honolulu, HI). Avogadro's 1811 publication, "Essay on a Manner of Determining the Relative Masses of the Elementary Molecules of Bodies, and the Proportions in Which They Enter into These Compounds", may be found here (thanks to Carmen Giunta, Le Moyne College, Syracuse, NY). A fun "mole" page to visit is here. It is a collection of student projects from Carondelet High School. Back in '98 they had a mole mystery described here. Did you know we have a mole day? Find out about it here. And for some corny mole jokes, don't miss the Dictionary of Mole Day Terms & Jokes here! Introduction A mole of objects contains Avogadro's number, 6.022 X 1023, objects. Just as a dozen apples is 12 apples, a mole of apples is 6.022 X 1023 apples. A mole of iron atoms is 6.022 X 1023 iron atoms.