BIOLOGY OF REPRODUCTION 54, 273-278 (1996) in Mice: Its Function and Mechanism'

Philip A. Leighton, Jennifer R. Saam, Robert S. Ingram, and Shirley M. Tilghman 2

Howard Hughes Medical Institute and Departmentof Princeton University, Princeton, New Jersey 08544

ABSTRACT

Genomic imprinting is an epigenetic phenomenon by which the two parental of a are differentially expressed. Although Downloaded from https://academic.oup.com/biolreprod/article/54/2/273/2761811 by guest on 30 September 2021 the function of genomic imprinting is not clear, it has been proposed that it evolved in mammals to regulate intrauterine growth. This proposal is consistent with experiments that were designed to reveal the mechanism and impact of genomic imprinting in a region of mouse 7 that contains four imprinted : Mash-2 (a factor) and (a noncoding RNA) are maternally expressed, whereas Insulin-2(lns-2) and Insulin-like growth factor2(lgf-2) are paternally expressed. Two targeted disruptions at the were generated in mice; these support the hypothesis that the function of the H19 gene is to set up the imprinting of both Igf-2 and Ins- 2.H19transcription on the maternal chromosome precludes transcription of the other two genes by a mechanism that involves competition for a common set of enhancers. On the paternal chromosome the H19 gene is silenced by DNA methylation, thus permitting the use of enhancers by the other genes.

INTRODUCTION allelic inactivation by imprinting. The function presumably Genomic imprinting is an epigenetic phenomenon by must confer selective advantage to the organism, as it must which the two parental alleles of a gene are differentially counterbalance the obvious attendant risk of hemizygosity. expressed [1, 2]. The existence of genomic imprinting in Several explanations have been proposed for the acquisi- mice was first deduced from nuclear transplantation exper- tion of genomic imprinting in eutherian mammals, includ- iments in which diploid zygotes were generated with ex- ing protection against and ovarian tumors clusive genetic contribution from either or fathers as well as chromosome loss [11-14]. To date the most com- [3, 4]. Neither kind of uniparental was able to sus- pelling model has been provided by Haig and his col- tain normal development, and the conclusion was drawn leagues [15], who suggest that imprinting evolved in mam- that the lethality was due to the absence or overexpression mals because of the conflicting interests of maternal and of one or more gene products as the result of the unequal paternal genes within a litter. In mammals, which are pri- expression of genes in the maternal and paternal . marily nonmonogamous, the provides significant As of 1995 there are twelve genes known to be subject maternal resources to the offspring both during intrauterine to genomic imprinting in mammals, three that are mater- and during suckling after birth. Successful passage of nally expressed and nine that are paternally expressed (Ta- paternal genes into the next generation is best ensured by ble 1). However, on the basis of the mapping of imprinted having the consume maternal resources, even if regions in the mouse using classical genetics [5], it by so doing the fitness of her future litters is compromised. is evident that Table 1 contains only a subset of the im- The mother's interests are best served by distributing her printed genes in the genome. For most genes that have been resources more equitably among litters. tested, there is conservation of imprinting between mice Haig's model predicts that paternally expressed genes and humans, although there is at least one exception, the will promote embryonic growth whereas maternal genes Insulin-like growth factor 2 (Igf-2r), which is ma- will act to restrain the use of maternal resources. In so do- ternally expressed in mice but biallelic in humans [6-8]. ing, this model is in remarkably good agreement with the Some of the imprinted genes are organized in clusters, and function of at least three imprinted genes: Insulin-like two of the clusters, on mouse 7 and 17, con- growthfactor2 (Igf-2), H19, and Igf-2r. Mouse embryos are tain both maternally and paternally expressed genes [9, 10]. exquisitely sensitive to the levels of the paternally ex- pressed growth factor insulin-like growth factor II (IGFII). A complete loss of function of the gene encoding the THE FUNCTION OF GENOMIC IMPRINTING growth factor, Igf-2, leads to a 40% reduction in birth weight With a growing list of imprinted genes in hand, the chal- [16]. Igf-2r, which is maternally expressed, encodes a bi- lenge is now to determine the function and mechanism of functional that acts as a sink for the growth factor. Fetuses that lack the receptor are approximately 30% larger 1 Supported by a grant from the National Institutes of Health (GM51460). 2 than normal, have elevated circulating levels of IGFII, and Correspondence: Shirley M. Tilghman, Department of Molecular Biology, Princeton University, Lewis Thomas Laboratory, Room 127, Washington Road, Princeton, NJ 08544. die around birth [17, 18]. It has been argued that the lethality FAX: (609) 258-3345; e-mail: [email protected] is the consequence of a gain of function of the effective

273 274 LEIGHTON ET AL.

TABLE 1. Chromosomal location if imprinted In mouse In human References Igf-2 paternal distal 7 11p15.5 [16, 47 481 H19 maternal distal 7 11p15.5 [28, 49, 50] Insulin-2 paternal distal 7 not tested [241 Mash-2 maternal distal 7 not tested [22] Snrpn paternal central 7 15q13-14 [51, 521 Znf-127 paternal central 7 15q13-14 R. Nicholls, personal comm. IPW paternal not tested 15q13-14 [451 Igf-2r maternal proximal 17 not imprinted 16, 7, 81

Mas paternal proximal 17 not tested 191 Downloaded from https://academic.oup.com/biolreprod/article/54/2/273/2761811 by guest on 30 September 2021 Xist paternal x X [53, 54] U2afbp-rs paternal proximal 11 not tested [551 Peg-I/Mest paternal proximal 6 not tested [561

. ______._ _n- ~11tr\~n the~ distnl~t"I1 ~ nnrtinn Cu1 1 nf1 mnlm11 o rchrnmnnmo1 1 11 1 1 7 thath t Itnntains tI. Mash-2 Ins-2 IXf2 H19 four imprinted genes (Fig. 1). The Mash-2 gene, one of a family of helix-loop-helix , is expressed from the Mat Pat Pat Mat maternal chromosome in spongiotrophoblasts of the mouse [21-23]. The Insulin-2gene (Ins-2), which lies ap- 100kb ---" -- - I 1. -- ... - II I I...1. "1 1 - I "~ .. I ~ [ l. alllla.ly AJtJ- JVJ llThI 11 IJIUJIfLJ 1 Jt'l CA- I ly FIG. 1. An imprinted region on the distal end of nnouse chromosome 7. The po- pressed in the yolk sac of the mouse embryo but biallelically sitions of the imprinted genes Mash-2, Ins-2, Igf- (Igf2 on figure), and H19 on expressed in the pancreas [24]. The paternally expressed mouse chromosome 7 [10, 221 are indicated. Mat, maternally expressed; Pat, pa- Igf-2 gene lies immediately downstream from Ins-2 [16]; and ternally expressed. at the end of the cluster lies the H19gene, an unusual gene concentration of circulating IGFII, orn the basis of the ob- that codes for a nontranslatable RNA [25-27]. Its expression servation that the lethality can be abr

TESTING THE ROLE OF ENHANCERS IN IMPRINTING The enhancer competition model rests on the premise that H19 and Igf-2 utilize the same enhancers. Only two en- hancers have been identified in the vicinity of the Igf-2 and H19 genes, at + 9 and + 11 kb relative to the start of tran- scription of the H19 gene [371. These enhancers displayed endoderm specificity in both tissue culture and transgenic mouse assays. To ask whether they are required for ex- pression of both H19 and Igf-2, a line of mice was generated in which the enhancers were deleted, and the consequence to the expression of H19 and Igf-2 was assessed [38] (Fig. 3A). When the enhancer was inherited from fe- males, there was a dramatic decline in H19 RNA in all tissues that contained cells of endodermal origin, as illustrated for liver in Figure 3B. The levels of Igf-2 RNA were unaffected by the maternal deletion of the enhancers, consistent with the fact that this allele of Igf-2 is normally silent. When the enhancer deletion was inherited from fathers, FIG. 3. Effect of the H19 enhancer deletion on the expression of H19 and Igf-2. A) however, the levels of Igf-2 RNA declined in exactly the same Organization of the wild-type H19 gene (upper line) and the H19 enhancer deletion chromosome (lower line), with the neomycin resistance gene replacing the 3' en- manner as H19RNA in the maternal heterozygotes, while the doderm enhancers (filled circles). B) Male or female enhancer deletion heterozy- levels of H19 RNA were unaffected (Fig. 3B). Thus the 3' en- gous mice were mated to wild-type animals, and total liver RNA was isolated from doderm enhancers are required equally for expression of the wild-type (+/+) or heterozygous (-/+) neonatal progeny. Each RNA was - ized to radiolabeled H19 and Igf-2 (lgf2on figure) RNA probes. The migration of the two genes but on different parental chromosomes. H19 and Igf-2 protected fragments is indicated by the arrows on the right. Lanes M, radiolabeled pBR322 digested with Mspl; lanes pH19 and plgf-2, migration of the TESTING THE ROLE OF THE H19 GENE ON Igf-2 full-length probes; lanes H19 and Igf-2, protected fragments from neonatal liver IMPRINTING RNA hybridized with the H19 probe or Igf-2 probe separately. (Adapted from [381.) As noted above, the best candidate for the epigenetic H19 gene on the maternal chromosome is an effective com- mark at the Igf-2/H19 locus that acts to bias the choice for petitor for the enhancers, whereas the methylation on the the enhancers is paternal-specific methylation at the H19 paternal chromosome serves to silence the H19 gene and gene itself. According to this scenario, the unmethylated permits Igf-2 transcription. To test the dependence of Igf-2 276 LEIGHTON ET AL.

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FIG. 4. Effect of the H19 deletion on expression of Igf-2. A) Organization of the wild-type H19 gene (upper line) and the H19 gene deletion chromosome (lower line). The filled circles indicate the 3' enhancers. B)Effect of maternal inheritance of the H19 deletion. Heterozygous mutant F1females were mated to B6(CAST-H19) [361 females, and RNA was isolated from livers of neonatal pups. An allele-specific RNAse protection assay that distinguishes between the 129Sv/Ev-derived paternal Igf-2 allele (Pat) and the M. castaneus-derived maternal allele (Mat) was used to assess the expression of gf-2. The lanes designations are M, marker; P, undigested probe; C, M. castaneus RNA, wild-type (+/+) progeny RNA, and heterozygous (+/-) progeny RNA. The B6 lane represents C57BL/6J-derived neonatal liver RNA, which behaves identically to 129Sv/Ev RNA. (Adapted from [20]). imprinting on the H19 gene, a strain of mice was generated the two alleles were detected at equivalent levels (Fig. 4B). that carries a deletion of the paternal-specific methylation Thus the effect of the H19 gene on expression of Igf-2 is domain, including the structural H19 gene itself and 10 kb restricted to those tissues in which Igf-2 is imprinted. of 5' flanking sequence [20] (Fig. 4A). The imprinting of Ins-2 was also disrupted by the H19 Since the paternal allele of H19 is normally silent, it was gene deletion [201. The loss of imprinting of the Ins-2 gene anticipated that paternal inheritance of the H19 deletion can be reconciled with the enhancer competition model if would have no phenotypic consequence. This proved to be the expression of that gene is under the control of the same the case, as both the maternal H19 allele and the paternal regulatory elements that govern H19 and Igf-2 expression allele of Igf-2 were unaffected by the H19 deletion in cis. in yolk sac (see Fig. 2). That is, on the paternal chromosome However, when the H19 deletion was inherited from a fe- the shared enhancers simultaneously activate Igf-2 and Ins- male, the neonatal progeny expressed both paternal and 2 when the H19 gene is in a silent state. In pancreas, on the maternal Igf-2 alleles in all tissues examined (Fig. 4B). Thus other hand, the pancreas-specific enhancers that lie 5' to deletion of the H19 gene and its 5' flanking sequences re- the gene direct biallelic Ins-2 expression [39, 40]. sults in the loss of imprinting of the Igf-2 gene, which lies The fact that the impact of the deletion of the H19 gene 80 kb 5' to the deletion. extends at least 95 kb to the Ins-2 gene raised the possibility The Igf-2 gene normally displays biallelic expression in that Mash-2, which is at least another 200 kb away, was also only two tissues during development, the choroid plexus affected. This is not the case, as neither the enhancer nor the and leptomeninges of the brain [16]. When Igf-2 expression gene deletion affected the imprinted expression of Mash-2 was examined in brains of maternal H19 heterozygotes, [20, 38]. Thus the influence of the H19 gene and its imprint there was no consequence of the deletion of H19 in cis, as does not extend the 200-300 kb distance to Mash-2. GENOMIC IMPRINTING: FUNCTION AND MECHANISM 277

THE POTENTIAL ROLE FOR RNA IN GENOMIC sensitive to the levels of this peptide, as that de- IMPRINTING crease the levels of IGFII affect their growth rate. For ex- The deletion of the H19 gene was a large one, extending ample, mice inheriting a null mutation in Igf-2 from fathers over 10 kb of 5' flanking DNA as well as the gene itself, and are 60% of the normal size at birth and maintain this pro- therefore it is possible that within the deletion lie multiple portional dwarfism throughout adult life [16, 46]. Newborns essential regions required for Igf-2 and Ins-2 imprinting. that inherit the H19 enhancer deletion from fathers were The simplest model is one in which there is a single "im- found to express lower levels of Igf-2 RNA only in endo- printer" that acts on all three genes. We have favored the dermal tissues [38]. Their weight was between 70 and 73% notion that the imprinter is the very strong H19 , that of their wild-type littermates at birth and was 80% at 3 whose activity on the maternal chromosome precludes Igf- wk of age-intermediate in size between mice that were Downloaded from https://academic.oup.com/biolreprod/article/54/2/273/2761811 by guest on 30 September 2021 2 expression. Its inactivation by DNA methylation on the null for Igf-2 and wild-type animals. paternal chromosome is both necessary and sufficient for The biologically active level of IGFII is regulated by two the expression of Igf-2. It is also possible, however, that this maternally expressed genes: through a transcriptional 13-kb domain contains a separate element that blocks the mechanism mediated by H19, which inactivates Igf-2 tran- access of Igf-2 to the enhancers on the maternal chromo- scription on the maternal chromosome, and through the some and that this element is inactivated by DNA methyl- action of the product of the Igf-2r gene, which encodes a ation on the paternal chromosome. binding protein for IGFII that functionally inactivates the Finally, it is possible that the silencing of the maternal growth factor. These two genes, by controlling the expres- Ins-2 and Igf-2 genes requires the product of the maternal sion of a critical growth factor, beautifully fulfill the predic- H19 gene itself. This proposal is derived from reports that tions of Haig's hypothesis for the function of genomic im- the genes for untranslated similar in overall structure printing in mammals. to H19 have been described in two other imprinted loci. Xist RNA is encoded by a gene that maps to the X chro- ACKNOWLEDGMENTS mosome inactivation center and is exclusively expressed from the paternally inherited inactive X chromosome in The authors are indebted to Drs. Argiris Efstratiadis, Colin Stewart, and Jonathan Eggen- schwiler for contributing to the studies in this review. We also thank the members of the early mouse embryos [41-44]. A noncoding RNA that maps Tilghman laboratory for many enthusiastic discussions during the course of the work. to the Prader-Willi syndrome locus on human is paternally expressed [45]. The evident conservation of the primary and secondary structure in these RNAs argues REFERENCES that they serve some function in mammals, and their pres- 1. Solter D. 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