The Extended Evolutionary Synthesis Facilitates Evolutionary Models of Culture Change
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The Economic Impact and Functional Applications of Human Genetics and Genomics
The Economic Impact and Functional Applications of Human Genetics and Genomics Commissioned by the American Society of Human Genetics Produced by TEConomy Partners, LLC. Report Authors: Simon Tripp and Martin Grueber May 2021 TEConomy Partners, LLC (TEConomy) endeavors at all times to produce work of the highest quality, consistent with our contract commitments. However, because of the research and/or experimental nature of this work, the client undertakes the sole responsibility for the consequence of any use or misuse of, or inability to use, any information or result obtained from TEConomy, and TEConomy, its partners, or employees have no legal liability for the accuracy, adequacy, or efficacy thereof. Acknowledgements ASHG and the project authors wish to thank the following organizations for their generous support of this study. Invitae Corporation, San Francisco, CA Regeneron Pharmaceuticals, Inc., Tarrytown, NY The project authors express their sincere appreciation to the following indi- viduals who provided their advice and input to this project. ASHG Government and Public Advocacy Committee Lynn B. Jorde, PhD ASHG Government and Public Advocacy Committee (GPAC) Chair, President (2011) Professor and Chair of Human Genetics George and Dolores Eccles Institute of Human Genetics University of Utah School of Medicine Katrina Goddard, PhD ASHG GPAC Incoming Chair, Board of Directors (2018-2020) Distinguished Investigator, Associate Director, Science Programs Kaiser Permanente Northwest Melinda Aldrich, PhD, MPH Associate Professor, Department of Medicine, Division of Genetic Medicine Vanderbilt University Medical Center Wendy Chung, MD, PhD Professor of Pediatrics in Medicine and Director, Clinical Cancer Genetics Columbia University Mira Irons, MD Chief Health and Science Officer American Medical Association Peng Jin, PhD Professor and Chair, Department of Human Genetics Emory University Allison McCague, PhD Science Policy Analyst, Policy and Program Analysis Branch National Human Genome Research Institute Rebecca Meyer-Schuman, MS Human Genetics Ph.D. -
Genomic Sequencing of SARS-Cov-2: a Guide to Implementation for Maximum Impact on Public Health
Genomic sequencing of SARS-CoV-2 A guide to implementation for maximum impact on public health 8 January 2021 Genomic sequencing of SARS-CoV-2 A guide to implementation for maximum impact on public health 8 January 2021 Genomic sequencing of SARS-CoV-2: a guide to implementation for maximum impact on public health ISBN 978-92-4-001844-0 (electronic version) ISBN 978-92-4-001845-7 (print version) © World Health Organization 2021 Some rights reserved. This work is available under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 IGO licence (CC BY-NC-SA 3.0 IGO; https://creativecommons.org/licenses/by-nc-sa/3.0/igo). Under the terms of this licence, you may copy, redistribute and adapt the work for non-commercial purposes, provided the work is appropriately cited, as indicated below. In any use of this work, there should be no suggestion that WHO endorses any specific organization, products or services. The use of the WHO logo is not permitted. If you adapt the work, then you must license your work under the same or equivalent Creative Commons licence. If you create a translation of this work, you should add the following disclaimer along with the suggested citation: “This translation was not created by the World Health Organization (WHO). WHO is not responsible for the content or accuracy of this translation. The original English edition shall be the binding and authentic edition”. Any mediation relating to disputes arising under the licence shall be conducted in accordance with the mediation rules of the World Intellectual Property Organization (http://www.wipo.int/amc/en/mediation/rules/). -
The Problem of Moral Statements in Historical Writing
Montclair State University Montclair State University Digital Commons Theses, Dissertations and Culminating Projects 5-2012 The rP oblem of Moral Statements in Historical Writing Alexandra Katherine Perry Montclair State University Follow this and additional works at: https://digitalcommons.montclair.edu/etd Part of the Education Commons, and the History Commons Recommended Citation Perry, Alexandra Katherine, "The rP oblem of Moral Statements in Historical Writing" (2012). Theses, Dissertations and Culminating Projects. 20. https://digitalcommons.montclair.edu/etd/20 This Dissertation is brought to you for free and open access by Montclair State University Digital Commons. It has been accepted for inclusion in Theses, Dissertations and Culminating Projects by an authorized administrator of Montclair State University Digital Commons. For more information, please contact [email protected]. THE PROBLEM OF MORAL STATEMENTS IN HISTORICAL WRITING A DISSERTATION Submitted to the Faculty of Montclair State University in partial fulfillment of the requirements for the degree of Doctor of Education by ALEXANDRA KATHERINE PERRY Montclair State University Upper Montclair, NJ 2012 Dissertation Chair: Dr. Jaime Grinberg Copyright © 2012 by Alexandra Katherine Perry. All rights reserved. ABSTRACT THE PROBLEM OF MORAL STATEMENTS IN HISTORICAL WRITING by Alexandra Katherine Perry Bernard Williams (1985) begins his skeptical look at the history of ethical theory with a reminder of where it began, with Socrates’ question, "how should one live?" (pg. 1). This question is relevant to historians, who ask a similar question, “how did people live?” in their own work, To wonder “how one should live” or to make statements about the ways in which people have lived is to rely on the work of historians. -
A New Era in the Study of Global History Is Born but It Needs to Be Nurtured
[JCH 5.1-2 (2018–19)] JCH (print) ISSN 2051-9672 https://doi.org/10.1558/jch.39422 JCH (online) ISSN 2051-9680 A New Era in the Study of Global History is Born but It Needs to be Nurtured Harvey Whitehouse1 University of Oxford, UK Email: [email protected] (corresponding author) Peter Turchin2 University of Connecticut Email: [email protected] (corresponding author) Pieter François3, Patrick E. Savage4, Thomas E. Currie5, Kevin C. Feeney6, Enrico Cioni7, Rosalind Purcell8, Robert M. Ross9, Jennifer Larson10, John Baines11, Barend ter Haar12, R. Alan Covey13 Abstract: Thisa rticle is a response to Slingerland e t al. who criticize the quality of the data from Seshat: Global History Databank utilized in our Nature paper entitled “Complex Societies Precede Moralizing Gods throughout World History”. Their cri- tique centres around the roles played by research assistants and experts in procuring and curating data, periodization structure, and so-called “data pasting” and “data fill- ing”. We show that these criticisms are based on misunderstandings or misrepresenta- tions of the methods used by Seshat researchers. Overall, Slingerland et al.’s critique (which is crosslinked online here) does not call into question any of our main findings, but it does highlight various shortcomings of Slingerland et al.’s database project. Our collective efforts to code and quantify features of global history hold out the promise of a new era in the study of global history but only if critique can be conducted con- structively in good faith and both the benefitsa nd the pitfalls of open science fully recognized. -
The Integration of Economic History Into Economics
Cliometrica https://doi.org/10.1007/s11698-018-0170-8 ORIGINAL PAPER The integration of economic history into economics Robert A. Margo1 Received: 28 June 2017 / Accepted: 16 January 2018 Ó Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract In the USA today the academic field of economic history is much closer to economics than it is to history in terms of professional behavior, a stylized fact that I call the ‘‘integration of economic history into economics.’’ I document this using two types of evidence—use of econometric language in articles appearing in academic journals of economic history and economics; and publication histories of successive cohorts of Ph.D.s in the first decade since receiving the doctorate. Over time, economic history became more like economics in its use of econometrics and in the likelihood of scholars publishing in economics, as opposed to, say, economic history journals. But the pace of change was slower in economic history than in labor economics, another subfield of economics that underwent profound intellec- tual change in the 1950s and 1960s, and there was also a structural break evident for post-2000 Ph.D. cohorts. To account for these features of the data, I sketch a simple, overlapping generations model of the academic labor market in which junior scholars have to convince senior scholars of the merits of their work in order to gain tenure. I argue that the early cliometricians—most notably, Robert Fogel and Douglass North—conceived of a scholarly identity for economic history that kept the field distinct from economics proper in various ways, until after 2000 when their influence had waned. -
Genome Evolution FRI, 12:30-1:30,12:30-1:30 NCB-117
BIOLOGY 4200B/9561B: WINTER 20172017 ROOM TC-203——————— (MON, WED) MON & WED,ROOM 12:30-1:30, NCB-117 TC-203 (FRI) genome evolution FRI, 12:30-1:30,12:30-1:30 NCB-117 instructor: David Smith | office: BGS3028 | office hours: FRI 4:30-5:30 | [email protected] About the class: Ever wonder why some genomes are gigantic and others are so tiny? Why some are simple, circular molecules while others are fragmented into hundreds of linear chromosomes? This course will try to answer these & other questions about genome evolution. It will explore the diversity in genomic architecture across the eukaryotic tree of life. Through lectures, student presentations, and group discussions, we will examine strange and bizarre genomes – genomes that break all of the rules. We will discuss controversial hypotheses about genome evolution and the scientists who developed them. The course also has a strong “communications” component, with lectures on scientific writing, speaking, and social media – all with a bend on genomics, of course. Prerequisites: 4200B: 1.5 Biol courses at 3000 level or above & registration in Year 4 of an Honors specialization module. 9561B: Graduate student in Biology. Text: All materials will be provided in class or online. Course website: www.arrogantgenome.com/genome-evolution/ [password: genome] Evaluation1: take-home exam class presentation •short-essay questions •describe your favourite genome •genome trivia •hypothesize about the architectural 30% 30% origins •or delve into a topic on science communication 10% journal club presentations & class discussions/debates 30% •who will speak for the genomes? 1,000- to 1,500-word essay •a person, a genome, a hypothesis, or anything pop-science. -
Functional and Evolutionary Genomic Inferences in Populus Through Genome and Population Sequencing of American and European Aspen
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen Yao-Cheng Lina,b,c,1, Jing Wangd,e,1, Nicolas Delhommef,1, Bastian Schiffthalerg, Görel Sundströmf, Andrea Zuccoloh, Björn Nystedti, Torgeir R. Hvidsteng,j, Amanda de la Torred,k, Rosa M. Cossuh,l, Marc P. Hoeppnerm,n, Henrik Lantzm,o, Douglas G. Scofieldd,p,q, Neda Zamanif,m, Anna Johanssoni, Chanaka Mannapperumag, Kathryn M. Robinsong, Niklas Mählerg, Ilia J. Leitchr, Jaume Pellicerr, Eung-Jun Parks, Marc Van Montagua,2, Yves Van de Peera,t, Manfred Grabherrm, Stefan Janssong, Pär K. Ingvarssond,u, and Nathaniel R. Streetg,2 aVIB-UGent Center for Plant Systems Biology and Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; bBiotechnology Center in Southern Taiwan, Academia Sinica, Tainan 74145, Taiwan; cAgricultural Biotechnology Research Center, Academia Sinica, Tainan 74145, Taiwan; dUmeå Plant Science Centre, Department of Ecology and Environmental Science, Umeå University 901 87, Umeå, Sweden; eCentre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, 5003 Ås, Norway; fUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83 Umeå, Sweden; gUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, 901 87 Umeå, Sweden; hInstitute of Life Sciences, Scuola Superiore Sant’Anna, 56127 -
Evodevo: an Ongoing Revolution?
philosophies Article EvoDevo: An Ongoing Revolution? Salvatore Ivan Amato Department of Cognitive Sciences, University of Messina, Via Concezione 8, 98121 Messina, Italy; [email protected] or [email protected] Received: 27 September 2020; Accepted: 2 November 2020; Published: 5 November 2020 Abstract: Since its appearance, Evolutionary Developmental Biology (EvoDevo) has been called an emerging research program, a new paradigm, a new interdisciplinary field, or even a revolution. Behind these formulas, there is the awareness that something is changing in biology. EvoDevo is characterized by a variety of accounts and by an expanding theoretical framework. From an epistemological point of view, what is the relationship between EvoDevo and previous biological tradition? Is EvoDevo the carrier of a new message about how to conceive evolution and development? Furthermore, is it necessary to rethink the way we look at both of these processes? EvoDevo represents the attempt to synthesize two logics, that of evolution and that of development, and the way we conceive one affects the other. This synthesis is far from being fulfilled, but an adequate theory of development may represent a further step towards this achievement. In this article, an epistemological analysis of EvoDevo is presented, with particular attention paid to the relations to the Extended Evolutionary Synthesis (EES) and the Standard Evolutionary Synthesis (SET). Keywords: evolutionary developmental biology; evolutionary extended synthesis; theory of development 1. Introduction: The House That Charles Built Evolutionary biology, as well as science in general, is characterized by a continuous genealogy of problems, i.e., “a kind of dialectical sequence” of problems that are “linked together in a continuous family tree” [1] (p. -
Molecular Population Genetics
| FLYBOOK ECOLOGY AND EVOLUTION Molecular Population Genetics Sònia Casillas*,† and Antonio Barbadilla*,†,1 *Institut de Biotecnologia i de Biomedicina, and yDepartament de Genètica i de Microbiologia, Campus Universitat Autònoma de Barcelona (UAB), 08193 Cerdanyola del Vallès, Barcelona, Spain ORCID IDs: 0000-0001-8191-0062 (S.C.); 0000-0002-0374-1475 (A.B.) ABSTRACT Molecular population genetics aims to explain genetic variation and molecular evolution from population genetics principles. The field was born 50 years ago with the first measures of genetic variation in allozyme loci, continued with the nucleotide sequencing era, and is currently in the era of population genomics. During this period, molecular population genetics has been revolutionized by progress in data acquisition and theoretical developments. The conceptual elegance of the neutral theory of molecular evolution or the footprint carved by natural selection on the patterns of genetic variation are two examples of the vast number of inspiring findings of population genetics research. Since the inception of the field, Drosophila has been the prominent model species: molecular variation in populations was first described in Drosophila and most of the population genetics hypotheses were tested in Drosophila species. In this review, we describe the main concepts, methods, and landmarks of molecular population genetics, using the Drosophila model as a reference. We describe the different genetic data sets made available by advances in molecular technologies, and the theoretical developments fostered by these data. Finally, we review the results and new insights provided by the population genomics approach, and conclude by enumerating challenges and new lines of inquiry posed by in- creasingly large population scale sequence data. -
Launching the Journal Peter Turchin University of Connecticut
Cliodynamics: the Journal of Theoretical and Mathematical History Editor’s Column: Launching the Journal Peter Turchin University of Connecticut Welcome to the inaugural issue of Cliodynamics: The Journal of Theoretical and Mathematical History. ‘Cliodynamics’ is a transdisciplinary area of research integrating historical macrosociology, economic history and cliometrics, mathematical modeling of long-term social processes, and the construction and analysis of historical databases. Cliodynamics: The Journal of Theoretical and Mathematical History will publish original articles advancing the state of theoretical knowledge in this discipline. This includes the search for general principles explaining the functioning and dynamics of historical societies and construction of mathematical models embodying such principles. There is also empirical content that deals with discovering general empirical patterns, determining empirical adequacy of key assumptions made by models, and testing theoretical predictions with data from actual historical societies. A mature, or ‘developed theory,’ thus, integrates models with data. The articles published in the first issue of Cliodynamics illustrate different approaches to developing such an empirically grounded theory. Randall Collins builds a model of battle dynamics using verbal arguments and flow charts. Collins is well known for precise, crisp verbal formulations that can be readily translated into mathematical models (and we hope to publish such a translation in a future issue of the journal). Sergey Gavrilets and co-authors, on the other hand, approach the question of how complex societies evolved with a spatially explicit agent-based model. Finally, the main focus of William Thompson’s article is empirical, but it is motivated by a theoretical question: how can we contrast, and ultimately integrate, perspectives on global history associated with the secular cycle and leadership long cycle schools. -
Cliodynamics: the Journal of Theoretical and Mathematical History UC Riverside
Cliodynamics: The Journal of Theoretical and Mathematical History UC Riverside Peer Reviewed Title: Three Wishes for the World (with comment) Journal Issue: Cliodynamics, 4(2) Author: Whitehouse, Harvey, University of Oxford Swann, William Ingram, Gordon Prochownik, Karolina Lanman, Jonathan Waring, Timothy M Frost, Karl Jones, Douglas Reeve, Zoey Johnson, Dominic Publication Date: 2013 Publication Info: Cliodynamics: The Journal of Theoretical and Mathematical History Permalink: https://escholarship.org/uc/item/2wv6r7v3 Keywords: social cohesion, rituals, shared identity Local Identifier: irows_cliodynamics_21338 Abstract: A special feature at the Social Evolution Forum Copyright Information: All rights reserved unless otherwise indicated. Contact the author or original publisher for any necessary permissions. eScholarship is not the copyright owner for deposited works. Learn more at http://www.escholarship.org/help_copyright.html#reuse eScholarship provides open access, scholarly publishing services to the University of California and delivers a dynamic research platform to scholars worldwide. Cliodynamics: the Journal of Theoretical and Mathematical History SOCIAL EVOLUTION FORUM Three Wishes for the World Harvey Whitehouse University of Oxford If you had three wishes to change the world, what would they be? Perhaps you would like to put an end to war? Reverse global warming? Or eliminate extreme poverty? Introduction The key to solving all these problems is glue. It doesn’t come in a tube. It’s a very special adhesive – the kind that holds societies together. Social scientists call it ‘social cohesion’ or ‘solidarity’. Whatever we choose to call it, social glue is what makes people cooperate and solve problems for the greater good. Understanding how groups become glued together is crucial to addressing some of the biggest issues facing humanity today. -
Cliodynamics: the Journal of Quantitative History and Cultural Evolution UC Riverside
Cliodynamics: The Journal of Quantitative History and Cultural Evolution UC Riverside Peer Reviewed Title: Modeling Strategic Decisions in the Formation of the Early Neo-Assyrian Empire Journal Issue: Cliodynamics, 6(1) Author: Baudains, Peter, University College London Zamazalová, Silvie, University College London Altaweel, Mark, University College London Wilson, Alan, University College London Publication Date: 2015 Permalink: https://escholarship.org/uc/item/0415c0pj Acknowledgements: We would like to thank University College London’s Small Grant Grand Challenges Theme for funding this work. We would also like to thank the anonymous reviewers for their suggestions and input to this paper. Author Bio: Department of Security and Crime Science Department of History Institute of Archaeology Centre for Advanced Spatial Analysis Keywords: empires, imperialism, regression modeling, cost benefit analysis, conflict Local Identifier: irows_cliodynamics_25390 Abstract: Understanding patterns of conflict and pathways in which political history became established is critical to understanding how large states and empires ultimately develop and come to rule given eScholarship provides open access, scholarly publishing services to the University of California and delivers a dynamic research platform to scholars worldwide. regions and influence subsequent events. We employ a spatiotemporal Cox regression model to investigate possible causes as to why regions were attacked by the Neo-Assyrian (912-608 BCE) state. The model helps to explain how strategic benefits and costs lead to likely pathways of conflict and imperialism based on elite strategic decision-making. We apply this model to the early 9th century BCE, a time when historical texts allow us to trace yearly campaigns in specific regions, to understand how the Neo-Assyrian state began to re-emerge as a major political player, eventually going on to dominate much of the Near East and starting a process of imperialism that shaped the wider region for many centuries even after the fall of this state.