Actinomycetes: the Unparallel Potential Source of Antibiotics and Natural Products for Drug Discovery
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DAFTAR PUSTAKA Abidin, Z. A. Z., A. J. K. Chowdhury
160 DAFTAR PUSTAKA AKTINOMISETES PENGHASIL ANTIBIOTIK DARI HUTAN BAKAU TOROSIAJE GORONTALO YULIANA RETNOWATI, PROF. DR. A. ENDANG SUTARININGSIH SOETARTO, M.SC; PROF. DR. SUKARTI MOELJOPAWIRO, M.APP.SC; PROF. DR. TJUT SUGANDAWATY DJOHAN, M.SC Universitas Gadjah Mada, 2019 | Diunduh dari http://etd.repository.ugm.ac.id/ Abidin, Z. A. Z., A. J. K. Chowdhury, N. A. Malek, and Z. Zainuddin. 2018. Diversity, antimicrobial capabilities, and biosynthetic potential of mangrove actinomycetes from coastal waters in Pahang, Malaysia. J. Coast. Res., 82:174–179 Adegboye, M. F., and O. O. Babalola. 2012. Taxonomy and ecology of antibiotic producing actinomycetes. Afr. J. Agric. Res., 7(15):2255-2261 Adegboye, M.,F., and O. O. Babalola. 2013. Actinomycetes: a yet inexhausative source of bioactive secondary metabolites. Microbial pathogen and strategies for combating them: science, technology and eductaion, (A.Mendez-Vila, Ed.). Pp. 786 – 795. Adegboye, M. F., and O. O. Babalola. 2015. Evaluation of biosynthesis antibiotic potential of actinomycete isolates to produces antimicrobial agents. Br. Microbiol. Res. J., 7(5):243-254. Accoceberry, I., and T. Noel. 2006. Antifungal cellular target and mechanisms of resistance. Therapie., 61(3): 195-199. Abstract. Alongi, D. M. 2009. The energetics of mangrove forests. Springer, New Delhi. India Alongi, D. M. 2012. Carbon sequestration in mangrove forests. Carbon Management, 3(3):313-322 Amrita, K., J. Nitin, and C. S. Devi. 2012. Novel bioactive compounds from mangrove dirived Actinomycetes. Int. Res. J. Pharm., 3(2):25-29 Ara, I., M. A Bakir, W. N. Hozzein, and T. Kudo. 2013. Population, morphological and chemotaxonomical characterization of diverse rare actinomycetes in the mangrove and medicinal plant rhizozphere. -
Potential of Bioremediation and PGP Traits in Streptomyces As Strategies for Bio-Reclamation of Salt-Affected Soils for Agriculture
pathogens Review Potential of Bioremediation and PGP Traits in Streptomyces as Strategies for Bio-Reclamation of Salt-Affected Soils for Agriculture Neli Romano-Armada 1,2 , María Florencia Yañez-Yazlle 1,3, Verónica P. Irazusta 1,3, Verónica B. Rajal 1,2,4,* and Norma B. Moraga 1,2 1 Instituto de Investigaciones para la Industria Química (INIQUI), Universidad Nacional de Salta (UNSa)-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Av. Bolivia 5150, Salta 4400, Argentina; [email protected] (N.R.-A.); fl[email protected] (M.F.Y.-Y.); [email protected] (V.P.I.); [email protected] (N.B.M.) 2 Facultad de Ingeniería, UNSa, Salta 4400, Argentina 3 Facultad de Ciencias Naturales, UNSa, Salta 4400, Argentina 4 Singapore Centre for Environmental Life Sciences Engineering (SCELSE), School of Biological Sciences, Nanyang Technological University, Singapore 639798, Singapore * Correspondence: [email protected] Received: 15 December 2019; Accepted: 8 February 2020; Published: 13 February 2020 Abstract: Environmental limitations influence food production and distribution, adding up to global problems like world hunger. Conditions caused by climate change require global efforts to be improved, but others like soil degradation demand local management. For many years, saline soils were not a problem; indeed, natural salinity shaped different biomes around the world. However, overall saline soils present adverse conditions for plant growth, which then translate into limitations for agriculture. Shortage on the surface of productive land, either due to depletion of arable land or to soil degradation, represents a threat to the growing worldwide population. Hence, the need to use degraded land leads scientists to think of recovery alternatives. -
Isolation, Purification and Structure Elucidation of Three New Bioactive
BIOCELL Tech Science Press 2021 Isolation, purification and structure elucidation of three new bioactive secondary metabolites from Streptomyces lividans AM MOHAMMAD EL-METWALLY1,*;MAMDOUH ABDEL-MOGIB2;MANAL ELFEDAWY2;GAAD SOHSAH2;AHMED REZK3; MAHMOUD MOUSTAFA4;MOHAMED SHAABAN5,6 1 Botany and Microbiology Department, Faculty of Science, Damanhour University, Damanhour, 22511, Egypt 2 Chemistry Department, Faculty of Science, Mansoura University, El-Mansoura, 35516, Egypt 3 Bioprocess Development Department, Genetic Engineering and Biotechnology Research Institute, City of Scientific Research and Technological Applications (SRTA-City), New Borg El-Arab City, Alexandria, 21934, Egypt 4 Biology Department, College of Science, King Khalid University, Abha, 9004, Saudi Arabia 5 Chemistry of Natural Compounds Department, Division of Pharmaceutical Industries, National Research Centre, Dokki-Cairo, 12622, Egypt 6 Organic and Bioorganic Chemistry, Department of Chemistry, Bielefeld University, Bielefeld, 33615, Germany Key words: Bioactive metabolites, Streptomyces sp., Taxonomy, Biological activity Abstract: Microorganisms are a huge mine of bioactive metabolites, and actinomycetes are one of the very active groups in this area. In this article, we are concerned about the full taxonomical characterization of Streptomyces lividans AM, isolated from Egyptian soil. This isolate produced three new bioactive metabolites, namely: 1-Nona-decanoyl,4-oleyl disuccinate (1), filoboletic acid; (9Z,11E)-8,13-dihydroxy octadeca-9,11-dienoic acid (2), and sitosteryl-3β-D-glucoside (3). Extensive1Dand2DNMRandHR-massspectrometrywereusedtoelucidatethestructuresofthethreecompounds. Moreover, ten known compounds were also identified. The antimicrobial activity of the producing organism and newly reported compounds (1–3) was investigated against a selected group of pathogenic microorganisms. A full taxonomical characterization of the strain was described as well. Introduction pharmacologically active agents (Ahmad et al., 2017). -
Marine Rare Actinomycetes: a Promising Source of Structurally Diverse and Unique Novel Natural Products
Review Marine Rare Actinomycetes: A Promising Source of Structurally Diverse and Unique Novel Natural Products Ramesh Subramani 1 and Detmer Sipkema 2,* 1 School of Biological and Chemical Sciences, Faculty of Science, Technology & Environment, The University of the South Pacific, Laucala Campus, Private Mail Bag, Suva, Republic of Fiji; [email protected] 2 Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands * Correspondence: [email protected]; Tel.: +31-317-483113 Received: 7 March 2019; Accepted: 23 April 2019; Published: 26 April 2019 Abstract: Rare actinomycetes are prolific in the marine environment; however, knowledge about their diversity, distribution and biochemistry is limited. Marine rare actinomycetes represent a rather untapped source of chemically diverse secondary metabolites and novel bioactive compounds. In this review, we aim to summarize the present knowledge on the isolation, diversity, distribution and natural product discovery of marine rare actinomycetes reported from mid-2013 to 2017. A total of 97 new species, representing 9 novel genera and belonging to 27 families of marine rare actinomycetes have been reported, with the highest numbers of novel isolates from the families Pseudonocardiaceae, Demequinaceae, Micromonosporaceae and Nocardioidaceae. Additionally, this study reviewed 167 new bioactive compounds produced by 58 different rare actinomycete species representing 24 genera. Most of the compounds produced by the marine rare actinomycetes present antibacterial, antifungal, antiparasitic, anticancer or antimalarial activities. The highest numbers of natural products were derived from the genera Nocardiopsis, Micromonospora, Salinispora and Pseudonocardia. Members of the genus Micromonospora were revealed to be the richest source of chemically diverse and unique bioactive natural products. -
Investigating the Relationship Between Amphotericin B and Extracellular
Investigating the relationship between amphotericin B and extracellular vesicles produced by Streptomyces nodosus By Samuel John King A thesis submitted in partial fulfilment of the requirements for the degree of Master of Research School of Science and Health Western Sydney University 2017 Acknowledgements A big thank you to the following people who have helped me throughout this project: Jo, for all of your support over the last two years; Ric, Tim, Shamilla and Sue for assistance with electron microscope operation; Renee for guidance with phylogenetics; Greg, Herbert and Adam for technical support; and Mum, you're the real MVP. I acknowledge the services of AGRF for sequencing of 16S rDNA products of Streptomyces "purple". Statement of Authentication The work presented in this thesis is, to the best of my knowledge and belief, original except as acknowledged in the text. I hereby declare that I have not submitted this material, either in full or in part, for a degree at this or any other institution. ……………………………………………………..… (Signature) Contents List of Tables............................................................................................................... iv List of Figures .............................................................................................................. v Abbreviations .............................................................................................................. vi Abstract ..................................................................................................................... -
Actinomycetospora Chiangmaiensis Gen. Nov., Sp. Nov., a New Member of the Family Pseudonocardiaceae
International Journal of Systematic and Evolutionary Microbiology (2008), 58, 408–413 DOI 10.1099/ijs.0.64976-0 Actinomycetospora chiangmaiensis gen. nov., sp. nov., a new member of the family Pseudonocardiaceae Yi Jiang,1,2 Jutta Wiese,1 Shu-Kun Tang,2 Li-Hua Xu,2 Johannes F. Imhoff1 and Cheng-Lin Jiang2 Correspondence 1Leibniz-Institut fu¨r Meereswissenschaften, IFM-GEOMAR, Du¨sternbrooker Weg 20, Johannes F. Imhoff D-24105 Kiel, Germany [email protected] 2Yunnan Institute of Microbiology, Yunnan University, Kunming 650091, China Li-Hua Xu [email protected] A novel actinomycete strain, YIM 0006T, was isolated from soil of a tropical rainforest in northern Thailand. The isolate displayed the following characteristics: aerial mycelium is absent, short spore chains are formed directly on the substrate mycelium, contains meso-diaminopimelic acid, arabinose and galactose (cell-wall chemotype IV), the diagnostic phospholipid is phosphatidylcholine, MK-9(H4) is the predominant menaquinone and the G+C content of the genomic DNA is 69.0 mol%. Phylogenetic analysis and phenotypic characteristics showed that strain YIM 0006T belongs to the family Pseudonocardiaceae but can be distinguished from representatives of all genera classified in the family. The novel genus and species Actinomycetospora chiangmaiensis gen. nov., sp. nov. are proposed, with strain YIM 0006T (5CCTCC AA 205017T 5DSM 45062T) as the type strain of Actinomycetospora chiangmaiensis. The first description of the family Pseudonocardiaceae was the strain were determined after growth at 28 uC for given by Embley et al. (1988), and the description was 2 weeks by methods used in the International Streptomyces emended by Stackebrandt et al. -
Isolation and Characterization of Streptomyces Sp. NMF76 with Potential Antimicrobial Activity from Mangrove Sediment, Red Sea, Egypt
Egyptian Journal of Aquatic Biology & Fisheries Zoology Department, Faculty of Science, Ain Shams University, Cairo, Egypt. ISSN 1110 – 6131 Vol. 24(6): 479 – 495 (2020) www.ejabf.journals.ekb.eg Isolation and characterization of Streptomyces sp. NMF76 with potential antimicrobial activity from mangrove sediment, Red Sea, Egypt. Nayer M. Fahmy National Institute of Oceanography and Fisheries, Egypt. Author email: [email protected] ARTICLE INFO ABSTRACT Article History: Streptomyce sp. NMF76 was isolated from mangrove sediment at the Received: Sept. 15, 2020 Egyptian Red Sea coast by serial dilution method and identified based on Accepted: Oct. 4, 2020 morphological and biochemical properties as well as 16s rDNA sequence Online: Oct. 7, 2020 analysis. The culturing parameters maximizing the antimicrobial activity and _______________ the MIC values for the tested pathogens were determined. The ethyl acetate extract was analyzed by GC-MS. Morphological and biochemical Keywords: characteristics and 16s rDNA sequence analysis affiliated the strain to the Streptomyces, Streptomyces genus with accession number, MT0199162. It exhibited the antimicrobial activity, maximum antimicrobial activity when cultured in ISP5 medium containing 3% culturing conditions, NaCl and incubated at 30 ᵒC for 14 days with glycerol and L-asparagine as Red Sea, carbon and nitrogen sources, respectively. The strain exhibited antimicrobial Mangrove, activity against Vibrio damsela, S. aureus, E. fecalis and C. albicans and the GC-MS MIC values were 285,400, 461 and 545 µg/mL, respectively. GC-MS analysis of the extract revealed the presence of Benzene, 1,2,4-trimethyl (21.47 %), 2H- Pyran-3-ol,tetrahydro-2,2,6-trimethyl-6-(4-methyl-3-cyclohexen-1-yl)-, [2S- [2à, 5á (R*) ] ]- (18.35 %) , Benzene, 1-ethyl-3-methyl- (15.76 %), and undecane (9.96 %) as major components. -
Systematic Research on Actinomycetes Selected According
Systematic Research on Actinomycetes Selected according to Biological Activities Dissertation Submitted in fulfillment of the requirements for the award of the Doctor (Ph.D.) degree of the Math.-Nat. Fakultät of the Christian-Albrechts-Universität in Kiel By MSci. - Biol. Yi Jiang Leibniz-Institut für Meereswissenschaften, IFM-GEOMAR, Marine Mikrobiologie, Düsternbrooker Weg 20, D-24105 Kiel, Germany Supervised by Prof. Dr. Johannes F. Imhoff Kiel 2009 Referent: Prof. Dr. Johannes F. Imhoff Korreferent: ______________________ Tag der mündlichen Prüfung: Kiel, ____________ Zum Druck genehmigt: Kiel, _____________ Summary Content Chapter 1 Introduction 1 Chapter 2 Habitats, Isolation and Identification 24 Chapter 3 Streptomyces hainanensis sp. nov., a new member of the genus Streptomyces 38 Chapter 4 Actinomycetospora chiangmaiensis gen. nov., sp. nov., a new member of the family Pseudonocardiaceae 52 Chapter 5 A new member of the family Micromonosporaceae, Planosporangium flavogriseum gen nov., sp. nov. 67 Chapter 6 Promicromonospora flava sp. nov., isolated from sediment of the Baltic Sea 87 Chapter 7 Discussion 99 Appendix a Resume, Publication list and Patent 115 Appendix b Medium list 122 Appendix c Abbreviations 126 Appendix d Poster (2007 VAAM, Germany) 127 Appendix e List of research strains 128 Acknowledgements 134 Erklärung 136 Summary Actinomycetes (Actinobacteria) are the group of bacteria producing most of the bioactive metabolites. Approx. 100 out of 150 antibiotics used in human therapy and agriculture are produced by actinomycetes. Finding novel leader compounds from actinomycetes is still one of the promising approaches to develop new pharmaceuticals. The aim of this study was to find new species and genera of actinomycetes as the basis for the discovery of new leader compounds for pharmaceuticals. -
Isolation and Diversity of Sediment Bacteria in The
bioRxiv preprint doi: https://doi.org/10.1101/638304; this version posted May 14, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Isolation and Diversity of Sediment Bacteria in the 2 Hypersaline Aiding Lake, China 3 4 Tong-Wei Guan, Yi-Jin Lin, Meng-Ying Ou, Ke-Bao Chen 5 6 7 Institute of Microbiology, Xihua University, Chengdu 610039, P. R. China. 8 9 Author for correspondence: 10 Tong-Wei Guan 11 Tel/Fax: +86 028 87720552 12 E-mail: [email protected] 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 bioRxiv preprint doi: https://doi.org/10.1101/638304; this version posted May 14, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 29 Abstract A total of 343 bacteria from sediment samples of Aiding Lake, China, were isolated using 30 nine different media with 5% or 15% (w/v) NaCl. The number of species and genera of bacteria recovered 31 from the different media significantly varied, indicating the need to optimize the isolation conditions. 32 The results showed an unexpected level of bacterial diversity, with four phyla (Firmicutes, 33 Actinobacteria, Proteobacteria, and Rhodothermaeota), fourteen orders (Actinopolysporales, 34 Alteromonadales, Bacillales, Balneolales, Chromatiales, Glycomycetales, Jiangellales, Micrococcales, 35 Micromonosporales, Oceanospirillales, Pseudonocardiales, Rhizobiales, Streptomycetales, and 36 Streptosporangiales), including 17 families, 41 genera, and 71 species. -
In Vitro Bioassay of Antibacterial and Antifungal Activity Studies of Actinomycetes from Soda Lakes of Ethiopia
In vitro bioassay of antibacterial and antifungal activity studies of actinomycetes from soda lakes of Ethiopia Kenesa Chali ( [email protected] ) Department of Applied Biology, Adama Science and Technology University https://orcid.org/0000- 0001-5656-249X Zerihun Belay Department of Applied Biology, Adama Science and Technology University Ketema Bacha Jimma University, Jimma, Ethiopia Research Article Keywords: Actinomycetes, Antibiotics, Microbial diversity, Soda lakes, Streptomyces Posted Date: June 29th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-668562/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/27 Abstract The ever-increasing spectrum of microbial disease and emergence of life-threatening antibiotic-resistant pathogens necessitates more intensive search for microbial antagonistic agents from diverse symbionts and habitats. Based on these hypotheses the current study was initiated to investigate in vitro antibacterial and antifungal activities of both crude and pure compounds isolated from potential actinomycete isolates recovered from soda lakes of Ethiopia. Two soda lakes, Arenguade/Hora Hadho/ and Chitu were included in this study. A total of fteen 12 water samples were collected and actinomycete cultures were isolated by serial dilution plating technique on various media. Morphological and biochemical characterization of selected isolates was done as described in the International Streptomyces Project Guidelines. Minimum inhibitory concentrations of the crude extract was determined for fungus using the protocol described in National Committee for Clinical Laboratory Standards and for the bacteria disc diffusion assay method as described in the Clinical and Laboratory Standards Institution. Ethanol extracts obtained from Solid State Fermentation a total of 36 isolates of actinomycetes were subjected to primary screening and tested for activity against the bacterial and fungal reference strain. -
Microbial Community Structure Analysis in Acer Palmatum Bark and Isolation of Novel Bacteria IAD-21 of the Phylum Abditibacteriota (Former Candidate Division FBP)
Microbial community structure analysis in Acer palmatum bark and isolation of novel bacteria IAD-21 of the phylum Abditibacteriota (former candidate division FBP) Kazuki Kobayashi1 and Hideki Aoyagi1,2 1 Division of Life Sciences and Bioengineering, Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan 2 Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan ABSTRACT Background: The potential of unidentified microorganisms for academic and other applications is limitless. Plants have diverse microbial communities associated with their biomes. However, few studies have focused on the microbial community structure relevant to tree bark. Methods: In this report, the microbial community structure of bark from the broad-leaved tree Acer palmatum was analyzed. Both a culture-independent approach using polymerase chain reaction (PCR) amplification and next generation sequencing, and bacterial isolation and sequence-based identification methods were used to explore the bark sample as a source of previously uncultured microorganisms. Molecular phylogenetic analyses based on PCR-amplified 16S rDNA sequences were performed. Results: At the phylum level, Proteobacteria and Bacteroidetes were relatively abundant in the A. palmatum bark. In addition, microorganisms from the phyla Acidobacteria, Gemmatimonadetes, Verrucomicrobia, Armatimonadetes, and Submitted 2 February 2019 Abditibacteriota, which contain many uncultured microbial species, existed in the Accepted 12 September 2019 A. palmatum bark. Of the 30 genera present at relatively high abundance in the bark, Published 29 October 2019 some genera belonging to the phyla mentioned were detected. A total of 70 isolates Corresponding author could be isolated and cultured using the low-nutrient agar media DR2A and Hideki Aoyagi, PE03. -
Thèse De DOCTORAT En SCIENCES Option : BIOTECHNOLOGIE
REPUBLIQUE ALGERIENNE DEMOCRATIQUE ET POPULAIRE MINISTERE DE L’ENSEIGNEMENT SUPERIEUR ET DE LA RECHERCHE SCIENTIFIQUE UNIVERSITE D’ORAN 1 AHMED BEN BELLA FACULTE DES SCIENCES DE LA NATURE ET DE LA VIE DEPARTEMENT DE BIOTECHNOLOGIE N° d’ordre : Thèse de DOCTORAT en SCIENCES Option : BIOTECHNOLOGIE Spécialité : Intérêt des microorganismes en Agriculture et en Agroalimentaire Caractérisation des molécules bioactives produites par des souches d’actinobactériés isolées des sols arides et semi arides d’Algérie. Présentée par Mr. Mohamed HARIR Soutenue le 09/04/2018 Devant le Jury composé de : Présidente Pr. Fortas Zohra Université d’Oran 1 Examinateur Pr. Aoues Abdelkader Université d’Oran 1 Examinateur Dr. Dib Soulef Université d’Oran 1 Examinateur Pr. Setti Benali Université de Chlef Examinateur Pr. Djibaoui Rachid Université de Mostaganem Directeur de thèse Pr. Bellahcene Miloud CU d’Ain Témouchent Invité 2017/2018 Dédicace A ma Mère A mon Père A mes frères et mes sœurs A mes nièces et mes neveux A tous mes chers Collègues et ami (e) s A la mémoire de ma collègue Madame Tlemcani Mokhtaria ALLAH yarhamha HARIR Mohamed I Remerciement Merci au Bon dieu de m’avoir aidé à réaliser ce travail Je tiens à remercier particulièrement mon directeur de thèse, Pr. BELLAHCENE Miloud qui m’a aidé à faire mon chemin du Magister à la thèse. Son rôle dans ma formation, sa patience, ses précieux conseils, sa confiance et l’autonomie qu’il m’a accordée ont été autant d’éléments qui ont contribués au bon déroulement de ce travail de thèse. Je voudrais également remercier Professeur FORTAS Zohra, pour son soutien, ses conseils et son aide.