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Supplementary Tables Table S1. Differentially expressed mRNAs between hepatocellular carcinoma samples and norm id logFC logCPM PValue FDR ADAMTS13 -2.833207344 3.334405025 1.15E-129 2.56E-125 STAB2 -4.870650299 2.305374593 1.47E-113 1.64E-109 OIT3 -3.262127723 4.410218665 3.44E-113 2.57E-109 KLHL30-AS1 -7.265158998 -0.701741025 2.55E-106 1.42E-102 CFP -3.418713806 3.044824775 3.10E-95 1.39E-91 ECM1 -3.086527178 3.816488518 1.45E-94 5.41E-91 BMPER -4.526397199 0.973575663 3.92E-91 1.25E-87 CCL23 -2.952799406 -0.954369445 3.10E-90 8.68E-87 ANGPTL6 -2.982287311 2.453902659 9.27E-89 2.30E-85 CSRNP1 -2.250080147 5.294886342 4.77E-86 1.07E-82 CLEC4G -5.413207123 3.406424078 3.15E-83 6.41E-80 CRHBP -4.491933308 3.677574701 5.54E-79 1.03E-75 RCAN1 -2.402435306 6.072760912 9.34E-77 1.61E-73 RND3 -2.504751072 5.552944615 5.25E-76 8.38E-73 PTH1R -3.256419562 2.508696952 1.20E-75 1.79E-72 MARCO -4.874420498 3.961913955 3.75E-75 5.25E-72 VIPR1 -3.480629262 2.677165122 1.14E-74 1.50E-71 NTF3 -3.514934593 0.280446008 2.78E-73 3.46E-70 FCN3 -4.111636594 4.706777862 4.61E-73 5.43E-70 FCN2 -4.89769589 3.248707139 1.23E-72 1.38E-69 MAP2K1 -1.270179745 5.319579407 8.05E-71 8.58E-68 GABRD 4.505903141 1.732527598 6.85E-70 6.96E-67 LRAT -2.909145621 1.506527597 3.21E-68 3.12E-65 ZFP36 -2.162319752 7.231484262 1.03E-66 9.56E-64 COLEC10 -3.960302226 2.359672061 1.38E-66 1.23E-63 NDST3 -4.327716977 -1.757923699 1.57E-65 1.35E-62 DBH -3.207724149 3.169431722 1.76E-65 1.46E-62 LIFR -2.833569571 4.128856592 6.18E-65 4.94E-62 CETP -2.823607461 3.204268457 1.12E-64 8.63E-62 PLVAP 2.914687883 6.459530208 1.22E-63 9.12E-61 TRIB1 -2.00351332 6.860251547 1.62E-62 1.17E-59 FOS -3.10958211 6.900245909 9.37E-61 6.55E-58 AADAT -2.794140341 3.584448019 7.91E-60 5.36E-57 COL6A6 -3.365140044 -1.178008819 3.08E-59 2.03E-56 EHD3 -2.168964033 2.822626494 6.31E-59 4.03E-56 EBF2 5.112343013 0.029766046 2.08E-58 1.29E-55 CPEB3 -2.259541094 3.866783087 2.30E-58 1.39E-55 CLEC1B -5.231473106 1.599480629 2.65E-58 1.56E-55 PZP -4.339437092 4.333728761 7.91E-58 4.54E-55 C21orf91 -1.693495338 2.808246857 2.08E-57 1.16E-54 UBE2T 3.202818076 2.893945291 7.48E-57 4.08E-54 CDC37L1 -1.584928145 4.902992692 8.70E-57 4.63E-54 PHLDA1 -2.465253997 6.526229987 6.05E-56 3.15E-53 ADRA2B -2.23560979 1.335785851 1.00E-55 5.11E-53 C1RL -1.653099269 7.164358681 1.23E-55 6.10E-53 DNASE1L3 -2.911524873 4.754898205 5.31E-55 2.59E-52 SLC26A6 2.642070157 4.338731715 6.94E-55 3.30E-52 CDKN3 3.901529846 2.884650843 3.96E-54 1.85E-51 ARHGEF39 2.934250836 2.126142692 5.90E-54 2.69E-51 MXD3 2.672113318 3.115045806 2.95E-53 1.32E-50 CXorf36 2.207948308 3.096506985 3.75E-53 1.64E-50 TUBE1 -1.813860819 3.518498971 1.22E-52 5.25E-50 GPR182 -3.397934343 0.511901649 1.43E-52 6.03E-50 CDC25C 4.328877226 1.973177273 1.92E-52 7.87E-50 CLEC4M -5.596890211 2.119280736 1.93E-52 7.87E-50 PLSCR4 -1.929454379 4.369865263 2.92E-52 1.17E-49 LYVE1 -2.996162952 3.076923699 3.32E-52 1.30E-49 ZFP1 -1.70846279 2.968239752 4.17E-52 1.61E-49 PVALB -3.663113767 -1.588606444 9.78E-52 3.71E-49 CXCL12 -2.69515322 6.038771171 4.61E-51 1.72E-48 EGR1 -2.602009865 7.268588566 5.26E-51 1.93E-48 EPHA2 -2.10199353 4.87201391 6.42E-51 2.32E-48 CDCA5 3.430879422 3.402449364 7.25E-51 2.57E-48 ETS2 -1.692222246 7.616584129 8.12E-51 2.84E-48 CENPF 3.890427776 4.309616199 9.39E-51 3.23E-48 HIGD1B 3.103577771 -0.007476405 1.71E-50 5.79E-48 NUF2 4.196180337 2.45023513 1.96E-50 6.54E-48 DACH1 -2.623416035 -0.384173694 2.59E-50 8.54E-48 TROAP 4.20571057 2.933063558 3.66E-50 1.19E-47 SKA1 4.444214903 2.138499191 3.78E-50 1.21E-47 KIFC1 3.763455194 3.674524847 7.34E-50 2.31E-47 KCNN2 -3.470205405 1.942981122 7.76E-50 2.41E-47 ACADS -1.788870377 6.74431194 2.07E-49 6.34E-47 BCO2 -3.126095784 3.462702156 2.20E-49 6.64E-47 FBXO43 4.002297253 0.272910594 2.23E-49 6.64E-47 SPC24 3.469306426 3.279104056 3.52E-49 1.04E-46 DUSP6 -1.752497973 6.183282233 4.01E-49 1.16E-46 HJURP 3.886927713 2.751061611 5.15E-49 1.48E-46 TMEM26 -2.204641262 -0.119010578 5.41E-49 1.53E-46 CCBE1 -3.539055542 1.006994101 5.71E-49 1.60E-46 PRC1 3.227716644 3.951464961 8.55E-49 2.36E-46 KIF4A 3.911121104 3.220019859 1.60E-48 4.36E-46 MELK 3.790950691 2.543055761 1.64E-48 4.41E-46 CCNB2 3.722578322 3.083256723 1.70E-48 4.52E-46 MCL1 -1.265088077 8.351082955 2.48E-48 6.52E-46 SPRY2 -1.545435152 3.665805734 3.44E-48 8.95E-46 NEK2 3.935290721 2.762918243 4.25E-48 1.09E-45 CD4 -1.96638461 5.804357359 4.38E-48 1.11E-45 NRBF2 -1.113897466 4.494600528 6.54E-48 1.65E-45 LCAT -2.577900383 6.170762118 8.53E-48 2.12E-45 CCNB1 3.268903819 4.18371021 1.01E-47 2.49E-45 NDC80 3.307570204 2.71548371 1.11E-47 2.69E-45 TCIM -2.266309163 5.560928457 1.17E-47 2.82E-45 BIRC5 4.083148061 4.350888839 1.76E-47 4.18E-45 TOMM40L 1.725435431 4.884700557 2.09E-47 4.91E-45 DCUN1D3 -1.197761778 3.232282457 2.66E-47 6.19E-45 IL1RAP -2.039431526 5.251851564 3.33E-47 7.67E-45 COL15A1 3.792555351 4.351255537 3.97E-47 9.05E-45 NCAPG 3.799833307 3.028462493 4.20E-47 9.43E-45 TBXA2R -1.814139536 1.870404732 4.22E-47 9.43E-45 EXO1 3.597602151 1.997866891 5.02E-47 1.11E-44 KIF2C 3.927320027 3.068040898 1.09E-46 2.38E-44 SFTA1P 5.580914249 -1.812840263 1.24E-46 2.69E-44 CD34 2.092795004 5.220298078 1.26E-46 2.71E-44 FAM189B 1.671325648 4.686305726 1.84E-46 3.92E-44 ASPM 3.724380901 4.052493359 2.24E-46 4.72E-44 BUB1 3.500437108 2.742916192 5.41E-46 1.13E-43 CYP2C19 -3.694587771 1.327288498 5.48E-46 1.14E-43 PTTG1 3.719029618 3.836533948 9.07E-46 1.86E-43 S100A12 -2.975110641 -1.906699315 1.29E-45 2.63E-43 CDK1 3.486034406 3.65302642 1.38E-45 2.79E-43 TIMD4 -3.481505781 0.660887847 1.90E-45 3.80E-43 EGR2 -2.566513992 2.034900708 2.27E-45 4.49E-43 KIF18B 4.029888876 2.396541228 2.95E-45 5.80E-43 CYP26A1 -3.836614271 2.376722565 3.56E-45 6.89E-43 DLGAP5 3.699291626 2.335593351 3.57E-45 6.89E-43 FOSB -3.248962452 5.300903778 3.83E-45 7.33E-43 KIF20A 3.711121242 3.101045683 4.11E-45 7.79E-43 CDCA3 3.286763701 2.670586024 4.72E-45 8.88E-43 CENPA 4.078243622 1.417957595 5.10E-45 9.50E-43 GHR -2.470380115 6.204018834 5.33E-45 9.85E-43 SGMS2 -1.780408957 3.977123541 8.08E-45 1.48E-42 EZH2 2.404516632 3.361885861 8.38E-45 1.52E-42 RACGAP1 2.421285691 3.664460337 9.50E-45 1.71E-42 PNRC1 -1.45122583 6.640258987 1.03E-44 1.84E-42 CDC20 4.262950453 3.97822584 1.05E-44 1.86E-42 TOP2A 3.913729191 5.187779348 1.76E-44 3.10E-42 VPS45 1.118735997 4.651054362 3.80E-44 6.62E-42 IL1RL1 -3.380638779 0.731543049 3.82E-44 6.62E-42 CDCA8 3.16802918 2.830748877 4.51E-44 7.76E-42 PKMYT1 3.155220961 2.368622177 7.90E-44 1.35E-41 SKA3 3.539708316 1.854395224 8.31E-44 1.41E-41 CENPL 2.374927475 1.910606015 1.70E-43 2.86E-41 UBE2C 4.10218537 3.684436894 1.90E-43 3.17E-41 ETFDH -1.672283823 5.922119093 1.91E-43 3.17E-41 CDH13 2.340914464 3.004873796 2.68E-43 4.40E-41 MSTO1 1.692095803 3.494776398 2.81E-43 4.58E-41 MRO -2.340444406 1.529767015 2.92E-43 4.74E-41 FOXM1 3.612486641 3.835480327 3.18E-43 5.12E-41 AC092171.2 2.596432091 3.018486498 3.69E-43 5.90E-41 HMMR 3.237924186 2.894353193 5.88E-43 9.33E-41 TRAIP 2.802739882 1.696199647 6.05E-43 9.54E-41 GPM6A -3.158324873 1.22592119 9.53E-43 1.49E-40 EME1 3.228459906 1.020553577 1.09E-42 1.69E-40 CHIC2 -1.001041785 2.926909021 1.47E-42 2.27E-40 ZIC2 6.646477117 2.271570847 1.50E-42 2.29E-40 PLK1 3.542849123 3.261025635 1.81E-42 2.76E-40 SPC25 3.128184847 1.436469893 1.92E-42 2.90E-40 AL391845.2 4.093942997 -2.291080989 2.54E-42 3.81E-40 CEP131 1.798712232 3.647507439 2.84E-42 4.23E-40 RNF152 -1.799113613 5.192862629 9.09E-42 1.35E-39 FLVCR1 2.199884371 3.679271456 9.73E-42 1.43E-39 C5orf34 2.391828888 0.469468302 1.02E-41 1.49E-39 SPATS2 1.571823604 3.851120567 1.05E-41 1.52E-39 PLPP3 -1.666360276 6.764789243 1.11E-41 1.60E-39 KDM8 -2.423715572 4.727775284 1.18E-41 1.69E-39 AC008556.1 -2.023342731 -0.693758158 1.21E-41 1.72E-39 AURKA 2.685523947 4.00485179 1.55E-41 2.20E-39 TTK 3.774642984 2.126555887 2.18E-41 3.06E-39 LILRA2 -1.973237195 0.280182971 2.34E-41 3.27E-39 SIGLEC11 -2.353951186 -0.025975551 2.91E-41 4.05E-39 E2F1 3.673389864 4.151997679 3.23E-41 4.46E-39 TRIP13 3.42303206 2.220491707 3.56E-41 4.89E-39 NAAA -1.644548356 4.37571523 3.72E-41 5.07E-39 RRM2 3.07827395 4.59933559 4.94E-41 6.70E-39 TMEM120B 1.247105125 3.097097058 5.83E-41 7.86E-39 ANLN 3.644674436 3.314285097 7.04E-41 9.43E-39 LILRA5 -2.168482207 0.615041902 7.95E-41 1.06E-38 KIF19 -2.420974263 -0.883144607 1.02E-40 1.36E-38 CDT1 3.402024147 3.417394398 1.34E-40 1.77E-38 DTL 3.261776077 3.233781092 1.74E-40 2.27E-38 GTSE1 3.532104115 2.129075582 1.76E-40 2.29E-38 SIGLEC7 -2.049080275 0.527183715 1.77E-40 2.30E-38 MAP2K3 -1.273657703 5.892191331 1.87E-40 2.41E-38 C21orf62 -2.761158989 -2.737507742 2.05E-40 2.62E-38 CENPE 3.15180079 2.163073015 2.14E-40 2.72E-38 FRMD4B -1.36124619 4.253059152 2.44E-40 3.08E-38 AURKB 3.553329822 2.828915208 2.56E-40 3.22E-38 MT2P1 -3.24485258 1.034749418 2.78E-40 3.47E-38 PLK3 -1.618232442 2.976687675 3.30E-40 4.11E-38 GSTZ1 -2.029403457 5.658842136 3.46E-40 4.28E-38 MKI67 3.359866257 4.723067222 4.40E-40 5.40E-38 LRRC4 -1.903800256 -0.287900518 5.15E-40 6.29E-38 TICRR 3.646089317 1.146884417 6.03E-40 7.29E-38 BUB1B 3.515602218 2.388134904 6.03E-40 7.29E-38 ZBTB21 -1.43554486 3.756862392 6.07E-40 7.30E-38 MYBL2 4.537449027 4.233700634 6.83E-40 8.18E-38 CDC6 3.203270181 3.478980096 7.61E-40 9.05E-38 LRRC14 1.497408677 4.623174493 9.87E-40 1.17E-37 SERTAD1 -1.576272993 4.100633372 1.06E-39 1.25E-37 SLC38A2 -1.631465862 7.894085372 1.11E-39 1.30E-37 IQGAP3 3.408138251 3.879209751 1.64E-39 1.92E-37 CD302 -1.688208647 4.8367851 1.75E-39 2.03E-37 CENPM 3.522665504 2.543379746 2.12E-39 2.44E-37 APLN 3.90345323 2.857253535
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