Evolution of Rhizaria
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Haplosporidium Nelsoni (MSX). In: Disease Processes in Marine Bivalve 169 Molluscs, Fisher W.S., Ed
1 CHAPTER 3.1.2. 2 3 MSX DISEASE 4 ( Haplosporidium nelsoni) 5 6 GENERAL INFORMATION 7 MSX disease is caused by the protistan Haplosporidium nelsoni (= Minchinia nelsoni) of the phylum 8 Haplosporidia (14). Haplosporidium nelsoni is commonly known as MSX (multinucleate sphere X). 9 The oysters Crassostrea virginica and Crassostrea gigas are infected by H. nelsoni; however, the 10 prevalence and virulence of this pathogen are much higher in C. virginica than in C. gigas (1, 5, 10, 11). 11 The geographical distribution of H. nelsoni in C. virginica is the east coast of North America from 12 Florida, USA, to Nova Scotia, Canada (9, 12). Enzootic areas are Delaware Bay and Chesapeake Bay, 13 with occasional epizootics in North Carolina estuaries, Long Island Sound, Cape Cod and Nova Scotia 14 (1, 8, 22). Haplosporidium nelsoni has been reported from Crassostrea gigas in California, USA 15 (10, 11), and in Korea, Japan, and France (5, 10, 15, 16, 18). Another Haplosporidium sp.also 16 occurs in C. gigas in France (6). 17 The plasmodium stage of H. nelsoni occurs intercellularly in connective tissue and epithelia. Spores of 18 H. nelsoni occur exclusively in the epithelium of the digestive tubules. Sporulation of H. nelsoni is rare 19 in infected adult oysters, but is frequently observed in infected juvenile oysters (2, 3). Infection by 20 H. nelsoni takes place between mid-May and the end of October. Mortalities from new infections occur 21 throughout the summer and peak in July/August. Mortalities may occur in the spring from over-wintering 22 infections. -
Novaya Zemlya Archipelago (Russian Arctic)
This is a repository copy of First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic). White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/127196/ Version: Accepted Version Article: Mazei, Yuri, Tsyganov, Andrey N, Chernyshov, Viktor et al. (2 more authors) (2018) First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic). Polar Biology. ISSN 0722-4060 https://doi.org/10.1007/s00300-018-2273-x Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ 1 First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic) 2 Yuri A. Mazei1,2, Andrey N. Tsyganov1, Viktor A. Chernyshov1, Alexander A. Ivanovsky2, Richard J. 3 Payne1,3* 4 1. Penza State University, Krasnaya str., 40, Penza 440026, Russia. 5 2. Lomonosov Moscow State University, Leninskiye Gory, 1, Moscow 119991, Russia. 6 3. University of York, Heslington, York YO10 5DD, United Kingdom. -
Molecular Phylogenetic Position of Hexacontium Pachydermum Jørgensen (Radiolaria)
Marine Micropaleontology 73 (2009) 129–134 Contents lists available at ScienceDirect Marine Micropaleontology journal homepage: www.elsevier.com/locate/marmicro Molecular phylogenetic position of Hexacontium pachydermum Jørgensen (Radiolaria) Tomoko Yuasa a,⁎, Jane K. Dolven b, Kjell R. Bjørklund b, Shigeki Mayama c, Osamu Takahashi a a Department of Astronomy and Earth Sciences, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan b Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway c Department of Biology, Tokyo Gakugei University, Koganei, Tokyo 184-8501, Japan article info abstract Article history: The taxonomic affiliation of Hexacontium pachydermum Jørgensen, specifically whether it belongs to the Received 9 April 2009 order Spumellarida or the order Entactinarida, is a subject of ongoing debate. In this study, we sequenced the Received in revised form 3 August 2009 18S rRNA gene of H. pachydermum and of three spherical spumellarians of Cladococcus viminalis Haeckel, Accepted 7 August 2009 Arachnosphaera myriacantha Haeckel, and Astrosphaera hexagonalis Haeckel. Our molecular phylogenetic analysis revealed that the spumellarian species of C. viminalis, A. myriacantha, and A. hexagonalis form a Keywords: monophyletic group. Moreover, this clade occupies a sister position to the clade comprising the spongodiscid Radiolaria fi Entactinarida spumellarians, coccodiscid spumellarians, and H. pachydermum. This nding is contrary to the results of Spumellarida morphological studies based on internal spicular morphology, placing H. pachydermum in the order Nassellarida Entactinarida, which had been considered to have a common ancestor shared with the nassellarians. 18S rRNA gene © 2009 Elsevier B.V. All rights reserved. Molecular phylogeny. 1. Introduction the order Entactinarida has an inner spicular system homologenous with that of the order Nassellarida. -
Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life
Smith ScholarWorks Biological Sciences: Faculty Publications Biological Sciences 10-1-2010 Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life Laura Wegener Parfrey University of Massachusetts Amherst Jessica Grant Smith College Yonas I. Tekle Smith College Erica Lasek-Nesselquist Marine Biological Laboratory Hilary G. Morrison Marine Biological Laboratory See next page for additional authors Follow this and additional works at: https://scholarworks.smith.edu/bio_facpubs Part of the Biology Commons Recommended Citation Parfrey, Laura Wegener; Grant, Jessica; Tekle, Yonas I.; Lasek-Nesselquist, Erica; Morrison, Hilary G.; Sogin, Mitchell L.; Patterson, David J.; and Katz, Laura A., "Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life" (2010). Biological Sciences: Faculty Publications, Smith College, Northampton, MA. https://scholarworks.smith.edu/bio_facpubs/126 This Article has been accepted for inclusion in Biological Sciences: Faculty Publications by an authorized administrator of Smith ScholarWorks. For more information, please contact [email protected] Authors Laura Wegener Parfrey, Jessica Grant, Yonas I. Tekle, Erica Lasek-Nesselquist, Hilary G. Morrison, Mitchell L. Sogin, David J. Patterson, and Laura A. Katz This article is available at Smith ScholarWorks: https://scholarworks.smith.edu/bio_facpubs/126 Syst. Biol. 59(5):518–533, 2010 c The Author(s) 2010. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: [email protected] DOI:10.1093/sysbio/syq037 Advance Access publication on July 23, 2010 Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life LAURA WEGENER PARFREY1,JESSICA GRANT2,YONAS I. TEKLE2,6,ERICA LASEK-NESSELQUIST3,4, 3 3 5 1,2, HILARY G. -
Rare Phytomyxid Infection on the Alien Seagrass Halophila Stipulacea In
Research Article Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net DOI: http://dx.doi.org/10.12681/mms.14053 Rare phytomyxid infection on the alien seagrass Halophila stipulacea in the southeast Aegean Sea MARTIN VOHNÍK1,2, ONDŘEJ BOROVEC1,2, ELIF ÖZGÜR ÖZBEK3 and EMINE ŞÜKRAN OKUDAN ASLAN4 1 Department of Mycorrhizal Symbioses, Institute of Botany, Czech Academy of Sciences, Průhonice, 25243 Czech Republic 2 Department of Plant Experimental Biology, Faculty of Science, Charles University, Prague, 12844 Czech Republic 3 Marine Biology Museum, Antalya Metropolitan Municipality, Antalya, Turkey 4 Department of Marine Biology, Faculty of Fisheries, Akdeniz University, Antalya, Turkey Corresponding author: [email protected] Handling Editor: Athanasios Athanasiadis Received: 31 May 2017; Accepted: 9 October 2017; Published on line: 8 December 2017 Abstract Phytomyxids (Phytomyxea) are obligate endosymbionts of many organisms such as algae, diatoms, oomycetes and higher plants including seagrasses. Despite their supposed significant roles in the marine ecosystem, our knowledge of their marine diversity and distribution as well as their life cycles is rather limited. Here we describe the anatomy and morphology of several developmental stages of a phytomyxid symbiosis recently discovered on the petioles of the alien seagrass Halophila stipulacea at a locality in the southeast Aegean Sea. Its earliest stage appeared as whitish spots already on the youngest leaves at the apex of the newly formed rhizomes. The infected host cells grew in volume being filled with plasmodia which resulted in the formation of characteristic macroscopic galls. -
Protistology Review of Diversity and Taxonomy of Cercomonads
Protistology 3 (4), 201217 (2004) Protistology Review of diversity and taxonomy of cercomonads Alexander P. Myl’nikov 1 and Serguei A. Karpov 2 1 Institute for the Biology of Inland Waters, Borok, Yaroslavl district, Russia 2 Biological Faculty, Herzen Pedagogical State University, St. Petersburg, Russia Summary Cercomonads are very common heterotrophic flagellates in water and soil. Phylogenetically they are a key group of a protistan phylum Cercozoa. Morphological and taxonomical analysis of cercomonads reveals that the order Cercomonadida (Vickerman) Mylnikov, 1986 includes two families: Cercomonadidae Kent, 1880 (=Cercobodonidae Hollande, 1942) and Heteromitidae Kent, 1880 em. Mylnikov, 2000 (=Bodomorphidae Hollande, 1952), which differ in several characters: body shape, temporary/habitual pseudopodia, presence/absence of plasmodia stage and microtubular cone, type of extrusomes. The family Cercomonadidae includes Cercomonas Dujardin, 1841 and Helkesimastix Woodcock et Lapage, 1914. All species of Cercobodo are transferred to the genus Cercomonas. The family Heteromitidae includes Heteromita Dujardin, 1841 emend. Mylnikov et Karpov, Protaspis Skuja, 1939, Allantion Sandon, 1924, Sainouron Sandon, 1924, Cholamonas Flavin et al., 2000 and Katabia Karpov et al., 2003. The names Bodomorpha and Sciviamonas are regarded as junior synonyms of Heteromita. The genus Proleptomonas Woodcock, 1916 according to its morphology is not a cercomonad, and is not included in the order. The genus Massisteria Larsen and Patterson, 1988 is excluded from -
Evidence for Glycolytic Reactions in the Mitochondrion?
Broad Distribution of TPI-GAPDH Fusion Proteins among Eukaryotes: Evidence for Glycolytic Reactions in the Mitochondrion? Takuro Nakayama1, Ken-ichiro Ishida2, John M. Archibald1* 1 Department of Biochemistry & Molecular Biology, Canadian Institute for Advanced Research, Program in Integrated Microbial Biodiversity, Dalhousie University, Halifax, Nova Scotia, Canada, 2 Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan Abstract Glycolysis is a central metabolic pathway in eukaryotic and prokaryotic cells. In eukaryotes, the textbook view is that glycolysis occurs in the cytosol. However, fusion proteins comprised of two glycolytic enzymes, triosephosphate isomerase (TPI) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH), were found in members of the stramenopiles (diatoms and oomycetes) and shown to possess amino-terminal mitochondrial targeting signals. Here we show that mitochondrial TPI- GAPDH fusion protein genes are widely spread across the known diversity of stramenopiles, including non-photosynthetic species (Bicosoeca sp. and Blastocystis hominis). We also show that TPI-GAPDH fusion genes exist in three cercozoan taxa (Paulinella chromatophora, Thaumatomastix sp. and Mataza hastifera) and an apusozoan protist, Thecamonas trahens. Interestingly, subcellular localization predictions for other glycolytic enzymes in stramenopiles and a cercozoan show that a significant fraction of the glycolytic enzymes in these species have mitochondrial-targeted isoforms. These results suggest that part -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Tsunami-Generated Rafting of Foraminifera Across the North Pacific Ocean
Aquatic Invasions (2018) Volume 13, Issue 1: 17–30 DOI: https://doi.org/10.3391/ai.2018.13.1.03 © 2018 The Author(s). Journal compilation © 2018 REABIC Special Issue: Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011 Research Article Tsunami-generated rafting of foraminifera across the North Pacific Ocean Kenneth L. Finger University of California Museum of Paleontology, Valley Life Sciences Building – 1101, Berkeley, CA 94720-4780, USA E-mail: [email protected] Received: 9 February 2017 / Accepted: 12 December 2017 / Published online: 15 February 2018 Handling editor: James T. Carlton Co-Editors’ Note: This is one of the papers from the special issue of Aquatic Invasions on “Transoceanic Dispersal of Marine Life from Japan to North America and the Hawaiian Islands as a Result of the Japanese Earthquake and Tsunami of 2011." The special issue was supported by funding provided by the Ministry of the Environment (MOE) of the Government of Japan through the North Pacific Marine Science Organization (PICES). Abstract This is the first report of long-distance transoceanic dispersal of coastal, shallow-water benthic foraminifera by ocean rafting, documenting survival and reproduction for up to four years. Fouling was sampled on rafted items (set adrift by the Tohoku tsunami that struck northeastern Honshu in March 2011) landing in North America and the Hawaiian Islands. Seventeen species of shallow-water benthic foraminifera were recovered from these debris objects. Eleven species are regarded as having been acquired in Japan, while two additional species (Planogypsina squamiformis (Chapman, 1901) and Homotrema rubra (Lamarck, 1816)) were obtained in the Indo-Pacific as those objects drifted into shallow tropical waters before turning north and east to North America. -
Protistology an International Journal Vol
Protistology An International Journal Vol. 10, Number 2, 2016 ___________________________________________________________________________________ CONTENTS INTERNATIONAL SCIENTIFIC FORUM «PROTIST–2016» Yuri Mazei (Vice-Chairman) Welcome Address 2 Organizing Committee 3 Organizers and Sponsors 4 Abstracts 5 Author Index 94 Forum “PROTIST-2016” June 6–10, 2016 Moscow, Russia Website: http://onlinereg.ru/protist-2016 WELCOME ADDRESS Dear colleagues! Republic) entitled “Diplonemids – new kids on the block”. The third lecture will be given by Alexey The Forum “PROTIST–2016” aims at gathering Smirnov (Saint Petersburg State University, Russia): the researchers in all protistological fields, from “Phylogeny, diversity, and evolution of Amoebozoa: molecular biology to ecology, to stimulate cross- new findings and new problems”. Then Sandra disciplinary interactions and establish long-term Baldauf (Uppsala University, Sweden) will make a international scientific cooperation. The conference plenary presentation “The search for the eukaryote will cover a wide range of fundamental and applied root, now you see it now you don’t”, and the fifth topics in Protistology, with the major focus on plenary lecture “Protist-based methods for assessing evolution and phylogeny, taxonomy, systematics and marine water quality” will be made by Alan Warren DNA barcoding, genomics and molecular biology, (Natural History Museum, United Kingdom). cell biology, organismal biology, parasitology, diversity and biogeography, ecology of soil and There will be two symposia sponsored by ISoP: aquatic protists, bioindicators and palaeoecology. “Integrative co-evolution between mitochondria and their hosts” organized by Sergio A. Muñoz- The Forum is organized jointly by the International Gómez, Claudio H. Slamovits, and Andrew J. Society of Protistologists (ISoP), International Roger, and “Protists of Marine Sediments” orga- Society for Evolutionary Protistology (ISEP), nized by Jun Gong and Virginia Edgcomb. -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Phylogenomics Supports the Monophyly of the Cercozoa T ⁎ Nicholas A.T
Molecular Phylogenetics and Evolution 130 (2019) 416–423 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenomics supports the monophyly of the Cercozoa T ⁎ Nicholas A.T. Irwina, , Denis V. Tikhonenkova,b, Elisabeth Hehenbergera,1, Alexander P. Mylnikovb, Fabien Burkia,2, Patrick J. Keelinga a Department of Botany, University of British Columbia, Vancouver V6T 1Z4, British Columbia, Canada b Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok 152742, Russia ARTICLE INFO ABSTRACT Keywords: The phylum Cercozoa consists of a diverse assemblage of amoeboid and flagellated protists that forms a major Cercozoa component of the supergroup, Rhizaria. However, despite its size and ubiquity, the phylogeny of the Cercozoa Rhizaria remains unclear as morphological variability between cercozoan species and ambiguity in molecular analyses, Phylogeny including phylogenomic approaches, have produced ambiguous results and raised doubts about the monophyly Phylogenomics of the group. Here we sought to resolve these ambiguities using a 161-gene phylogenetic dataset with data from Single-cell transcriptomics newly available genomes and deeply sequenced transcriptomes, including three new transcriptomes from Aurigamonas solis, Abollifer prolabens, and a novel species, Lapot gusevi n. gen. n. sp. Our phylogenomic analysis strongly supported a monophyletic Cercozoa, and approximately-unbiased tests rejected the paraphyletic topologies observed in previous studies. The transcriptome of L. gusevi represents the first transcriptomic data from the large and recently characterized Aquavolonidae-Treumulida-'Novel Clade 12′ group, and phyloge- nomics supported its position as sister to the cercozoan subphylum, Endomyxa. These results provide insights into the phylogeny of the Cercozoa and the Rhizaria as a whole.