Changes Occurring in Spontaneous Maize Fermentation: an Overview
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The Switch from Fermentation to Respiration in Saccharomyces Cerevisiae Is Regulated by the Ert1 Transcriptional Activator/Repressor
INVESTIGATION The Switch from Fermentation to Respiration in Saccharomyces cerevisiae Is Regulated by the Ert1 Transcriptional Activator/Repressor Najla Gasmi,* Pierre-Etienne Jacques,† Natalia Klimova,† Xiao Guo,§ Alessandra Ricciardi,§ François Robert,†,** and Bernard Turcotte*,‡,§,1 ‡Department of Medicine, *Department of Biochemistry, and §Department of Microbiology and Immunology, McGill University Health Centre, McGill University, Montreal, QC, Canada H3A 1A1, †Institut de recherches cliniques de Montréal, Montréal, QC, Canada H2W 1R7, and **Département de Médecine, Faculté de Médecine, Université de Montréal, QC, Canada H3C 3J7 ABSTRACT In the yeast Saccharomyces cerevisiae, fermentation is the major pathway for energy production, even under aerobic conditions. However, when glucose becomes scarce, ethanol produced during fermentation is used as a carbon source, requiring a shift to respiration. This adaptation results in massive reprogramming of gene expression. Increased expression of genes for gluconeogenesis and the glyoxylate cycle is observed upon a shift to ethanol and, conversely, expression of some fermentation genes is reduced. The zinc cluster proteins Cat8, Sip4, and Rds2, as well as Adr1, have been shown to mediate this reprogramming of gene expression. In this study, we have characterized the gene YBR239C encoding a putative zinc cluster protein and it was named ERT1 (ethanol regulated transcription factor 1). ChIP-chip analysis showed that Ert1 binds to a limited number of targets in the presence of glucose. The strongest enrichment was observed at the promoter of PCK1 encoding an important gluconeogenic enzyme. With ethanol as the carbon source, enrichment was observed with many additional genes involved in gluconeogenesis and mitochondrial function. Use of lacZ reporters and quantitative RT-PCR analyses demonstrated that Ert1 regulates expression of its target genes in a manner that is highly redundant with other regulators of gluconeogenesis. -
Instituto Politecnico Nacional
INSTITUTO POLITECNICO NACIONAL ESCUELA NACIONAL DE CIENCIAS BIOLOGICAS SECCIÓN DE ESTUDIOS DE POSGRADO E INVESTIGACIÓN ESTUDIO DE CAMBIOS ESTRUCTURALES Y EN ALGUNOS COMPUESTOS FENÓLICOS DURANTE LA ELABORACIÓN DE TESGÜINO DE MAÍZ AZUL (Zea mays) TESI S QUE PARA OBTENER EL GRADO DE: DOCTOR E N C I E N C I A S EN ALIMENTOS PRESENTA : M. EN C. DENI NAVA ARENAS DIRECTORES DE TESIS: DR. HUMBERTO HERNANDEZ SANCHEZ DR. ANTONIO JIMENEZ APARICIO MÉXICO, D.F. MAYO 2009 El presente trabajo se llevo a cabo en el Laboratorio de Biotecnología de Alimentos del Departamento de Graduados en Alimentos, Sección de Estudios de Posgrado e Investigación de la Escuela Nacional de Ciencias Biológicas del Instituto Politécnico Nacional, con el apoyo de los proyectos: Estudio de algunos cambios en los CGPI 2005 compuestos fitoquímicos del maíz azul (Zea Clave 2005 0137 mays L) durante su procesamiento biotecnológico. Estudio de algunos cambios en compuestos CGPI 2006 fenólicos del maíz azul durante la Clave 2006 0568 elaboración de tesgüino Así como de: Beca Institucional para estudios de Febrero 2005 – Julio 2006 Doctorado. Beca CONACyT para estudios de Agosto 2006 – Diciembre Doctorado. 2008 Apoyo del Programa Institucional Febrero 2005 – Diciembre de Formación de Investigadores. 2007 Beca Institucional para Tesis de Febrero 2009 – Julio 2009 Doctorado. INSTITUTO POLITÉCNICO NACIONAL ESCUELA NACIONAL DE CIENCIAS BIOLÓGICAS SECCIÓN DE ESTUDIOS DE PORGRADO E INVESTIGACIÓN DOCTORADO EN ALIMENTOS ESTUDIO DE CAMBIOS ESTRUCTURALES Y EN ALGUNOS COMPUESTOS FENÓLICOS DURANTE LA ELABORACIÓN DE TESGÜINO DE MAIZ AZUL (Zea mays) TESIS DE DOCTORADO DIRECTOR DE TÉSIS Y CONSEJERO DE ESTUDIOS: DR. HUMBERTO HERNÁNDEZ SÁNCHEZ DIRECTOR: DR. -
Ctsr, the Master Regulator of Stress-Response in Oenococcus
CtsR, the Master Regulator of Stress-Response in Oenococcus oeni, Is a Heat Sensor Interacting With ClpL1 Maud Darsonval, Frédérique Julliat, Tarek Msadek, Hervé Alexandre, Cosette Grandvalet To cite this version: Maud Darsonval, Frédérique Julliat, Tarek Msadek, Hervé Alexandre, Cosette Grandvalet. CtsR, the Master Regulator of Stress-Response in Oenococcus oeni, Is a Heat Sensor Interacting With ClpL1. Frontiers in Microbiology, Frontiers Media, 2018, 9, pp.1-14. 10.3389/fmicb.2018.03135. hal-01986589 HAL Id: hal-01986589 https://hal.archives-ouvertes.fr/hal-01986589 Submitted on 18 Jan 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License fmicb-09-03135 December 15, 2018 Time: 15:10 # 1 ORIGINAL RESEARCH published: 18 December 2018 doi: 10.3389/fmicb.2018.03135 CtsR, the Master Regulator of Stress-Response in Oenococcus oeni, Is a Heat Sensor Interacting With ClpL1 Maud Darsonval1†, Frédérique Julliat1†, Tarek Msadek2,3, Hervé Alexandre1,4 and Cosette Grandvalet1,5* 1 UMR -
Molecular Mechanisms Involved Involved in the Interaction Effects of HCV and Ethanol on Liver Cirrhosis
Virginia Commonwealth University VCU Scholars Compass Theses and Dissertations Graduate School 2010 Molecular Mechanisms Involved Involved in the Interaction Effects of HCV and Ethanol on Liver Cirrhosis Ryan Fassnacht Virginia Commonwealth University Follow this and additional works at: https://scholarscompass.vcu.edu/etd Part of the Physiology Commons © The Author Downloaded from https://scholarscompass.vcu.edu/etd/2246 This Thesis is brought to you for free and open access by the Graduate School at VCU Scholars Compass. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of VCU Scholars Compass. For more information, please contact [email protected]. Ryan C. Fassnacht 2010 All Rights Reserved Molecular Mechanisms Involved in the Interaction Effects of HCV and Ethanol on Liver Cirrhosis A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science at Virginia Commonwealth University. by Ryan Christopher Fassnacht, B.S. Hampden Sydney University, 2005 M.S. Virginia Commonwealth University, 2010 Director: Valeria Mas, Ph.D., Associate Professor of Surgery and Pathology Division of Transplant Department of Surgery Virginia Commonwealth University Richmond, Virginia July 9, 2010 Acknowledgement The Author wishes to thank his family and close friends for their support. He would also like to thank the members of the molecular transplant team for their help and advice. This project would not have been possible with out the help of Dr. Valeria Mas and her endearing -
Estudio Preliminar Del Axokot, Bebida Tradicional Fermentada, Bajo Una Perspectiva Transdisciplinaria
C i e n c i a y t e c n o l o g í a Estudio preliminar del Axokot, bebida tradicional fermentada, bajo una perspectiva transdisciplinaria María Guadalupe Sánchez Dirzo1, Clementina Esmeralda López Ferrer1,2, Martha Flores Valadez1,2, Ana Luisa Jofre Garfias1, José Antonio Aguirre Rodríguez1, Erika Jazmine Morales Cruz1, Ricardo Reyes Chilpa3. 1Universidad Simón Bolívar, 2Instituto Politécnico Nacional, 3Instituto de Química, UNAM. Resumen El Axokot es una bebida que preparan y consumen los nahuas de la Sierra Norte de Puebla. Se elabora con maíz nixtamalizado (Zea mays) y una pasta preparada con cal y axokotxihuit (Fleischmannia pycnocephala), cuya identidad botánica no había sido determinada. Su es- tudio se llevó a cabo a través de la entrevista y la observación directa de su elaboración en una comunidad nahua de Cuetzalan. Se exponen los avances realizados sobre su contenido nutricio y microbiota obtenidos mediante técnicas de normatividad vigentes para el análisis bromatológico y microbiológico. Palabras clave: Axokot, bebida tradicional fermentada, etnobotánica, microbiota, análisis bromatológico. Abstract The Axokot is a traditional fermented beverage made and drink by the nahuas from the North Mountains of Puebla. It is made by peeled corn (Zea mays) and a paste prepared with calcium oxide and axocotxihuit (Fleischmannia pycnocephala), which botanical species was not been determined previously. The study was made by direct interview with prepar- ing people and the observation of its elaboration. It is exposed the latest advances about its nutritional contents and microbiota obtained by actual normativity techniques for both bromatological and microbiological analysis. Keywords: Axokot, traditional fermented beverage, ethnobotany, microbiota, bromato- logical analysis. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
New Targets of Urocortin-Mediated Cardioprotection
69 New targets of urocortin-mediated cardioprotection Sea´n P Barry1, Kevin M Lawrence4, James McCormick1, Surinder M Soond5, Mike Hubank2, Simon Eaton3, Ahila Sivarajah6, Tiziano M Scarabelli7, Richard A Knight1, Christoph Thiemermann6, David S Latchman1, Paul A Townsend8 and Anastasis Stephanou1 1Medical Molecular Biology Unit, 2Department of Molecular Haematology and 3Department of Surgery, Institute of Child Health, University College London, 30 Guilford Street, London, WC1N 1EH, UK 4Department of Cellular Pathology, St George’s, University of London, Cranmer Terrace, Tooting, London, SW17 0RE, UK 5School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK 6St Bartholomew’s and The Royal London School of Medicine and Dentistry, William Harvey Research Institute, Centre for Translational Medicine and Therapeutics, Queen Mary University of London, London, EC1M 7BQ, UK 7Center for Heart and Vessel Preclinical Studies, St John Hospital and Medical Center, Wayne State University School of Medicine, 22201 Moross Road, Detroit, Michigan 48336, USA 8Human Genetics Division, MP808, Southampton General Hospital, University of Southampton, Southampton SO16 6YD, UK (Correspondence should be addressed to S P Barry; Email: [email protected]) Abstract The urocortin (UCN) hormones UCN1 and UCN2 have been shown previously to confer significant protection against myocardial ischaemia/reperfusion (I/R) injury; however, the molecular mechanisms underlying their action are poorly understood. To further define the transcriptional effect of UCNs that underpins their cardioprotective activity, a microarray analysis was carried out using an in vivo rat coronary occlusion model of I/R injury. Infusion of UCN1 or UCN2 before the onset of reperfusion resulted in the differential regulation of 66 and 141 genes respectively, the majority of which have not been described previously. -
Physico-Chemical and Sensory Properties of “Agidi” from Pearl-Millet (Pennisetum Glaucum) and Bambara Groundnut (Vigna Subterranean) Flour Blends
African Journal of Food Science Vol. 4(10), pp. 662-667, October 2010 Available online http://www.academicjournals.org/ajfs ISSN 1996-0794 ©2010 Academic Journals Full Length Research Paper Physico-chemical and sensory properties of “Agidi” from pearl-millet (Pennisetum glaucum) and bambara groundnut (Vigna subterranean) flour blends U. M. Zakari, A. Hassan and E. S. Abbo* Department of Food Technology, Kaduna Polytechnic, Kaduna, Nigeria. Accepted 8 September, 2010 Agidi was produced from different formulations of pearl millet ogi and Bambara groundnut flours. Six agidi products were produced at the laboratory scale with one as the control. The recipe formulations for the products were 100:0, 95:5, 90:10, 85:15, 80:20 and 75:25 pearl millet to bambara groundnut flours, respectively. The six formulated products were subjected to proximate, physico chemical and sensory analysis. The results showed that the protein contents increased with increased addition of bambara groundnut flour. The protein contents ranged from 2.44 to 7.0% on dry weight basis. The fat contents ranged from 1.25 to 3.1%. Carbohydrate content ranged from 71.2 to 77.7%. The physico- chemical parameters also varied. The pH ranged from 4.13 to 4.40 while titratable acidity ranged from 0.02 to 0.03. The bulk density increased from 0.32 to 0.44 g/ml as the proportion of bambara flour increased. The sensory panelists rated the products highly for all the parameters investigated. Product B with the proportion of 90:5 pearl millet to bambara flour was most acceptable to the panelists. -
Diversity on the Farm How Traditional Crops Around the World Help to Feed Us All, and Why We Should Reward the People Who Grow Them
Diversity on the Farm How traditional crops around the world help to feed us all, and why we should reward the people who grow them. FORD FOUNDATION By Charles C. Mann POLITICAL ECONOMY RESEARCH INSTITUTE UNIVERSITY OF MASSACHUSETTS Maize Front cover, left: Hector Diaz Castellano, a Zapotec small-holder, on his farm in the hills of southern Mexico; right: an array of native maize varieties. Above and right: Post-harvest survey of native maize varieties at INIFAP, an agricultural-research institute outside the city of Oaxaca; inside left: making the maize drink atole in a country market; inside right: rinsing off the lime used to process maize kernels for hand-made tortillas in Ítanoni, an unusual gourmet tortillería in Oaxaca city that may serve as one model for saving agricultural biodiversity. By Charles C. Mann Photographs by Peter Menzel Diversity on the Farm Subhead if any goes here for the development of wild corn and Maize heirloom varieties At Ítanoni, hand-made tortillas 2 Mission Statements 17 From the Stomach 23 The Best Tortillas from single varieties of native maize to the Heart in Mexico are cooked on traditional circular 3 Foreword clay griddles called comales. 25 Notes 5 Introduction 19 What We Can Do: Five Approaches 28 Credits 7 Building the Roof with 1. LABELING Stones from the Foundation 2. CROP IMPROVEMENT 3. REMOVING PERVERSE INCENTIVES 11 Conserving Agricultural Biodiversity 4. PAYING FOR CURRENTLY Copyright 2004 UNCOMPENSATED SERVICES by the Ford Foundation all rights reserved. 13 A Community Effort 5. INCREASING SOCIAL CAPITAL Mission Statements FORD FOUNDATION The Ford Foundation is a resource for innovative people and institutions worldwide. -
A Negative Feedback Loop of the TOR Signaling Moderates Growth And
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.06.284745; this version posted September 7, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 A negative feedback loop of the TOR signaling moderates 2 growth and enables rapid sensing of stress signals in plants 3 Muhammed Jamsheer K1#*<, Sunita Jindal1#>, Mohan Sharma1, Manvi Sharma1, Sreejath Sivaj2, 4 Chanchal Thomas Mannully1^, Ashverya Laxmi1* 5 1National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India 6 2Department of Mechanical Engineering, Indian Institute of Technology Delhi, New Delhi, 110016, 7 India 8 9 <Current affiliation: Amity Food & Agriculture Foundation, Amity University Uttar Pradesh, Sector 10 125, Noida 201313, India 11 ^Current affiliation: Cell Metabolism Laboratory, School of Pharmacy, The Hebrew University of 12 Jerusalem, Jerusalem, 9112102, Israel 13 >Current affiliation: Department of Molecular Biology and Radiology, Mendel University in Brno, 14 Brno, 613 00, Czech Republic 15 16 #Equal first authors 17 18 *Corresponding authors 19 Ashverya Laxmi 20 Muhammed Jamsheer K 21 Email: AL: [email protected] (Lead Contact); MJK: [email protected] 22 ORCID: Ashverya Laxmi (0000-0002-3430-4200); Muhammed Jamsheer K (0000-0002-2135- 23 8760) 24 25 26 27 28 29 30 31 32 33 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.09.06.284745; this version posted September 7, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. -
A BOUNTY of BEANS MSU’S Hearty Global Impact
SUMMER 2016 | Volume 34, Nos. 1 & 2 FUTURES A BOUNTY OF BEANS MSU’s hearty global impact BEAN COUNTING: MASFRIJOL: MEET MSU’S Measuring the A partnership improving JAMES KELLY: economic importance bean productivity A masterful bean of these crops in Guatemala breeder and mentor FUTURES | SUMMER 2016 1 FUTURES GLOBAL PULSES 36 Meet MSU’s James Kelly: A masterful bean CONTRIBUTORS breeder and mentor Holly Whetstone 5 Editor’s Message: My first trip to Africa 38 Bringing internationally-grown beans to U.S. markets EDITOR 6 The Legume Innovation Lab (LIL): MSU’s rich Cameron Rudolph history in legume and cowpea research 40 Paying it forward: The next generation of legume scientists WRITER 12 Bean counting: Measuring the economic James Dau importance of these crops Fighting pulse insects with integrated pest 43 WRITER management 16 USAID: Feed the Future aims to help end world Marguerite Halversen hunger, address food security 47 Michigan’s premier dry bean research center LEGUME INNOVATION expanding footprint LABORATORY Abby Lynn Rubley COVER STORY 50 Photosynthesis progress: Technological tools helping unveil secrecy of plant energy CENTER FOR GLOBAL CONNECTIONS and improve grain legume production 20 The United Nation declares 2016 the Kurt Stepnitz International Year of the Pulses. Moving from 53 Preventing malnutrition: Increasing the ‘underappreciated’ to a global stage, the light nutritional value of diets in Africa PHOTGRAPHY, MSU COMMUNICATIONS AND BRAND STRATEGY shines bright this year on the nutrient-rich crop. Leslie Johnson About the Cover: A woman, with her children, selling beans at a local market in Mozambique. COPY EDITOR, ANR FACULTY & FACILITY CREATIVE SERVICES Photo taken by Paballo Thekiso for the Food and Agriculture Organization of the United Nations. -
Los Herederos Del Maíz
LOS HEREDEROS DEL MAÍZ Amisadai Rosado Ortega Bruno Alejandro Villasante Serrano Ilustraciones Grecia Hernández Salcido 2 Instituto Nacional de los Pueblos Indígenas Lic. Adelfo Regino Montes Director General del Instituto Nacional de los Pueblos Indigenas Mtra. Bertha Dimas Huacuz Coordinadora General de Patrimonio Cultural y Educación Indígena Itzel Maritza García Licona Directora de Comunicación Social LOS HEREDEROS DEL MAÍZ Investigación Amisadai Rosado Ortega Bruno Alejandro Villasante Serrano Ilustraciones Grecia Hernández Salcido Corrección de estilo Paola Denisse Lozano Vera Edición Corina Ramírez Hernández Coordinación Norberto Zamora Pérez México, 2021 Índice 1. Introducción 07 2. Historia 09 3. Razas de Maíz Grupo Cónico 13 Grupo Sierra de Chihuahua 17 Grupo Ocho Hileras 19 Grupo Chapalote 22 Grupo Tropicales precoces 23 Grupo Dentados tropicales 24 Grupo Maduración tardía 27 4. Rituales 33 5. Glosario 39 6. Fuentes 40 6 1 Introducción n México el maíz: es el alimento que sencillamente unas palomitas. Consejos representa por excelencia nuestras que luego enseñaron e inspiraron a mu- Eraíces, nuestro presente y segura- chas generaciones mente el futuro. El maíz nos conecta con Todos hemos probado el sabor de este nuestra identidad como mexicanos. Es cereal, vive en nuestra memoria íntima y protagonista de libros, de mitos, de leyen- en escenarios donde nuestras papilas gus- das. El maíz, es el cereal que alimenta a tan su sabor. Y en este compendio, podrás todo un país. Todo lo que se obtiene del conocer que la historia del maíz nos reve- maíz abarca la economía, la gastronomía, la la relación que tenía con los antiguos la cultura, para finalmente acariciar el co- dioses.