Core Binding Factors Are Essential for Ovulation, Luteinization, and Female
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Transcriptome Profiling of Pediatric Core Binding Factor AML
RESEARCH ARTICLE Transcriptome Profiling of Pediatric Core Binding Factor AML Chih-Hao Hsu1, Cu Nguyen1, Chunhua Yan1, Rhonda E. Ries2, Qing-Rong Chen1, Ying Hu1, Fabiana Ostronoff2, Derek L. Stirewalt2, George Komatsoulis1, Shawn Levy3, Daoud Meerzaman1☯, Soheil Meshinchi2☯* 1 Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, MD, 20850, United States of America, 2 Fred Hutchinson Cancer Research Center, Seattle, WA, United States of America, 3 Hudson Alpha Institute for Biotechnology, Huntsville, AL, United States of America ☯ These authors contributed equally to this work. * [email protected] Abstract The t(8;21) and Inv(16) translocations disrupt the normal function of core binding factors alpha (CBFA) and beta (CBFB), respectively. These translocations represent two of the most com- OPEN ACCESS mon genomic abnormalities in acute myeloid leukemia (AML) patients, occurring in approxi- Citation: Hsu C-H, Nguyen C, Yan C, Ries RE, Chen mately 25% pediatric and 15% of adult with this malignancy. Both translocations are Q-R, Hu Y, et al. (2015) Transcriptome Profiling of associated with favorable clinical outcomes after intensive chemotherapy, and given the per- Pediatric Core Binding Factor AML. PLoS ONE 10(9): ceived mechanistic similarities, patients with these translocations are frequently referred to as e0138782. doi:10.1371/journal.pone.0138782 having CBF-AML. It remains uncertain as to whether, collectively, these translocations are Editor: Ken Mills, Queen's University Belfast, mechanistically the same or impact different pathways in subtle ways that have both biological UNITED KINGDOM and clinical significance. Therefore, we used transcriptome sequencing (RNA-seq) to investi- Received: June 15, 2015 gate the similarities and differences in genes and pathways between these subtypes of pediat- Accepted: September 3, 2015 ric AMLs. -
Core Binding Factor Β Is Required for Group 2 Innate Lymphoid Cell Activation
Cutting Edge: Core Binding Factor β Is Required for Group 2 Innate Lymphoid Cell Activation This information is current as Xiaofei Shen, Mingwei Liang, Xiangyu Chen, Muhammad of September 24, 2021. Asghar Pasha, Shanti S. D'Souza, Kelsi Hidde, Jennifer Howard, Dil Afroz Sultana, Ivan Ting Hin Fung, Longyun Ye, Jiexue Pan, Gang Liu, James R. Drake, Lisa A. Drake, Jinfang Zhu, Avinash Bhandoola and Qi Yang J Immunol 2019; 202:1669-1673; Prepublished online 6 Downloaded from February 2019; doi: 10.4049/jimmunol.1800852 http://www.jimmunol.org/content/202/6/1669 http://www.jimmunol.org/ Supplementary http://www.jimmunol.org/content/suppl/2019/02/05/jimmunol.180085 Material 2.DCSupplemental References This article cites 20 articles, 10 of which you can access for free at: http://www.jimmunol.org/content/202/6/1669.full#ref-list-1 Why The JI? Submit online. by guest on September 24, 2021 • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2019 by The American Association of Immunologists, Inc. All rights reserved. -
Deregulated Wnt/Β-Catenin Program in High-Risk Neuroblastomas Without
Oncogene (2008) 27, 1478–1488 & 2008 Nature Publishing Group All rights reserved 0950-9232/08 $30.00 www.nature.com/onc ONCOGENOMICS Deregulated Wnt/b-catenin program in high-risk neuroblastomas without MYCN amplification X Liu1, P Mazanek1, V Dam1, Q Wang1, H Zhao2, R Guo2, J Jagannathan1, A Cnaan2, JM Maris1,3 and MD Hogarty1,3 1Division of Oncology, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA; 2Department of Biostatistics and Epidemiology, University of Pennsylvania School of Medicine, Philadelphia, PA, USA and 3Department of Pediatrics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA Neuroblastoma (NB) is a frequently lethal tumor of Introduction childhood. MYCN amplification accounts for the aggres- sive phenotype in a subset while the majority have no Neuroblastoma (NB) is a childhood embryonal malig- consistently identified molecular aberration but frequently nancy arising in the peripheral sympathetic nervous express MYC at high levels. We hypothesized that acti- system. Half of all children with NB present with features vated Wnt/b-catenin (CTNNB1) signaling might account that define their tumorsashigh riskwith poor overall for this as MYC is a b-catenin transcriptional target and survival despite intensive therapy (Matthay et al., 1999). multiple embryonal and neural crest malignancies have A subset of these tumors are characterized by high-level oncogenic alterations in this pathway. NB cell lines without genomic amplification of the MYCN proto-oncogene MYCN amplification express higher levels of MYC and (Matthay et al., 1999) but the remainder have no b-catenin (with aberrant nuclear localization) than MYCN- consistently identified aberration to account for their amplified cell lines. -
Towards an Integrated View of Wnt Signaling in Development Renée Van Amerongen and Roel Nusse*
HYPOTHESIS 3205 Development 136, 3205-3214 (2009) doi:10.1242/dev.033910 Towards an integrated view of Wnt signaling in development Renée van Amerongen and Roel Nusse* Wnt signaling is crucial for embryonic development in all animal Notably, components at virtually every level of the Wnt signal species studied to date. The interaction between Wnt proteins transduction cascade have been shown to affect both β-catenin- and cell surface receptors can result in a variety of intracellular dependent and -independent responses, depending on the cellular responses. A key remaining question is how these specific context. As we discuss below, this holds true for the Wnt proteins responses take shape in the context of a complex, multicellular themselves, as well as for their receptors and some intracellular organism. Recent studies suggest that we have to revise some of messengers. Rather than concluding that these proteins are shared our most basic ideas about Wnt signal transduction. Rather than between pathways, we instead propose that it is the total net thinking about Wnt signaling in terms of distinct, linear, cellular balance of signals that ultimately determines the response of the signaling pathways, we propose a novel view that considers the receiving cell. In the context of an intact and developing integration of multiple, often simultaneous, inputs at the level organism, cells receive multiple, dynamic, often simultaneous and of both Wnt-receptor binding and the downstream, sometimes even conflicting inputs, all of which are integrated to intracellular response. elicit the appropriate cell behavior in response. As such, the different signaling pathways might thus be more intimately Introduction intertwined than previously envisioned. -
Supplemental Information For
Supplemental Information for: Gene Expression Profiling of Pediatric Acute Myelogenous Leukemia Mary E. Ross, Rami Mahfouz, Mihaela Onciu, Hsi-Che Liu, Xiaodong Zhou, Guangchun Song, Sheila A. Shurtleff, Stanley Pounds, Cheng Cheng, Jing Ma, Raul C. Ribeiro, Jeffrey E. Rubnitz, Kevin Girtman, W. Kent Williams, Susana C. Raimondi, Der-Cherng Liang, Lee-Yung Shih, Ching-Hon Pui & James R. Downing Table of Contents Section I. Patient Datasets Table S1. Diagnostic AML characteristics Table S2. Cytogenetics Summary Table S3. Adult diagnostic AML characteristics Table S4. Additional T-ALL characteristics Section II. Methods Table S5. Summary of filtered probe sets Table S6. MLL-PTD primers Additional Statistical Methods Section III. Genetic Subtype Discriminating Genes Figure S1. Unsupervised Heirarchical clustering Figure S2. Heirarchical clustering with class discriminating genes Table S7. Top 100 probe sets selected by SAM for t(8;21)[AML1-ETO] Table S8. Top 100 probe sets selected by SAM for t(15;17) [PML-RARα] Table S9. Top 63 probe sets selected by SAM for inv(16) [CBFβ-MYH11] Table S10. Top 100 probe sets selected by SAM for MLL chimeric fusion genes Table S11. Top 100 probe sets selected by SAM for FAB-M7 Table S12. Top 100 probe sets selected by SAM for CBF leukemias (whole dataset) Section IV. MLL in combined ALL and AML dataset Table S13. Top 100 probe sets selected by SAM for MLL chimeric fusions irrespective of blast lineage (whole dataset) Table S14. Class discriminating genes for cases with an MLL chimeric fusion gene that show uniform high expression, irrespective of blast lineage Section V. -
Wnt10b Participates in Regulating Fatty Acid Synthesis in the Muscle of Zebrafish
cells Article Wnt10b Participates in Regulating Fatty Acid Synthesis in the Muscle of Zebrafish Dongwu Liu 1,2,*, Qiuxiang Pang 2,*, Qiang Han 3, Qilong Shi 1, Qin Zhang 4,* and Hairui Yu 5 1 School of Agricultural Engineering and Food Science, Shandong University of Technology, Zibo 255049, China 2 Anti-Aging & Regenerative Medicine Research Institution, School of Life Sciences, Shandong University of Technology, Zibo 255049, China 3 Sunwin Biotech Shandong Co., Ltd., Weifang 262737, China 4 Guangxi Key Laboratory for Polysaccharide Materials and Modifications, Guangxi Colleges and Universities Key Laboratory of Utilization of Microbial and Botanical Resources, School of Marine Science and Biotechnology, Guangxi University for Nationalities, Nanning 530008, China 5 College of Biological and Agricultural Engineering, Weifang Bioengineering Technology Research Center, Weifang University, Weifang 261061, China * Correspondence: [email protected] (D.L.); [email protected] (Q.P.); [email protected] (Q.Z.) Received: 16 June 2019; Accepted: 27 August 2019; Published: 30 August 2019 Abstract: There are 19 Wnt genes in mammals that belong to 12 subfamilies. Wnt signaling pathways participate in regulating numerous homeostatic and developmental processes in animals. However, the function of Wnt10b in fatty acid synthesis remains unclear in fish species. In the present study, we uncovered the role of the Wnt10b signaling pathway in the regulation of fatty acid synthesis in the muscle of zebrafish. The gene of Wnt10b was overexpressed in the muscle of zebrafish using pEGFP-N1-Wnt10b vector injection, which significantly decreased the expression of glycogen synthase kinase 3β (GSK-3β), but increased the expression of β-catenin, peroxisome proliferators-activated receptor γ (PPARγ), and CCAAT/enhancer binding protein α (C/EBPα). -
Steffensen Et Al. Supplement 2A
Liver Wild-type Knockout 1 2 4 1 2 4 1 1 1 C C C C C C W W W K K K IMAGE:640919 expressed sequence AA960558 IMAGE:523974 RIKEN cDNA 1810004N01 gene IMAGE:1211217 eukaryotic translation initiation factor 4E binding protein 2 IMAGE:314741 beta-site APP cleaving enzyme IMAGE:1038420 silica-induced gene 41 IMAGE:1229655 soc-2 suppressor of clear homolog C. elegans IMAGE:1150065 Unknown IMAGE:1038486 RIKEN cDNA 2700038M07 gene IMAGE:524351 amyloid beta A4 precursor protein IMAGE:819912 thymus expressed acidic protein IMAGE:779426 RIKEN cDNA 5230400G24 gene IMAGE:945643 ESTs IMAGE:850544 Mpv17 transgene, kidney disease mutant IMAGE:537568 expressed sequence AA675315 IMAGE:1107584 yes-associated protein, 65 kDa IMAGE:961363 expressed sequence AU015422 IMAGE:775218 expressed sequence AI265322 IMAGE:792656 protein phosphatase 1B, magnesium dependent, beta isoform IMAGE:1038592 ESTs, Weakly similar to A43932 mucin 2 precursor, intestinal [H.sapiens] IMAGE:1224917 huntingtin interacting protein 2 IMAGE:751186 ESTs IMAGE:865151 Trk-fused gene IMAGE:523016 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IMAGE:765039 FBJ osteosarcoma oncogene B IMAGE:1003995 expressed sequence AI844632 IMAGE:903863 RIKEN cDNA 1300006L01 gene IMAGE:934094 ESTs IMAGE:988962 expressed sequence C77245 IMAGE:1023308 ESTs, Weakly similar to S71512 hypothetical protein T2 - mouse [M.musculus] IMAGE:865317 eukaryotic translation initiation factor 3 IMAGE:720445 ribosomal protein S6 IMAGE:1005417 expressed sequence AU024550 -
(APC) Gene Promoter Hypermethylation in Primary Breast Cancers
British Journal of Cancer (2001) 85(1), 69–73 © 2001 Cancer Research Campaign doi: 10.1054/ bjoc.2001.1853, available online at http://www.idealibrary.com on http://www.bjcancer.com Adenomatous polyposis coli (APC) gene promoter hypermethylation in primary breast cancers Z Jin1, G Tamura1, T Tsuchiya1, K Sakata1, M Kashiwaba2, M Osakabe1 and T Motoyama1 1Department of Pathology, Yamagata University School of Medicine, Yamagata 990-9585, Japan; 2Department of Surgery, Iwate Medical University of Medicine, Morioka 020-8505, Japan Summary Similar to findings in colorectal cancers, it has been suggested that disruption of the adenomatous polyposis coli (APC)/β-catenin pathway may be involved in breast carcinogenesis. However, somatic mutations of APC and β-catenin are infrequently reported in breast cancers, in contrast to findings in colorectal cancers. To further explore the role of the APC/β-catenin pathway in breast carcinogenesis, we investigated the status of APC gene promoter methylation in primary breast cancers and in their non-cancerous breast tissue counterparts, as well as mutations of the APC and β-catenin genes. Hypermethylation of the APC promoter CpG island was detected in 18 of 50 (36%) primary breast cancers and in none of 21 non-cancerous breast tissue samples, although no mutations of the APC and β-catenin were found. No significant associations between APC promoter hypermethylation and patient age, lymph node metastasis, oestrogen and progesterone receptor status, size, stage or histological type of tumour were observed. These results indicate that APC promoter CpG island hypermethylation is a cancer-specific change and may be a more common mechanism of inactivation of this tumour suppressor gene in primary breast cancers than previously suspected. -
Adenovirus-Mediated Wnt10b Overexpression Induces Hair
ORIGINAL ARTICLE See related commentary on pg 7 Adenovirus-Mediated Wnt10b Overexpression Induces Hair Follicle Regeneration Yu-Hong Li1, Kun Zhang1, Ke Yang1, Ji-Xing Ye2, Yi-Zhan Xing1, Hai-Ying Guo1, Fang Deng1, Xiao-Hua Lian1 and Tian Yang1 Hair follicles periodically undergo regeneration. The balance between activators and inhibitors may determine the time required for telogen hair follicles to reenter anagen. We previously reported that Wnt10b (wingless- type mouse mammary tumor virus integration site family member 10b) could promote the growth of hair follicles in vitro. To unveil the roles of Wnt10b in hair follicle regeneration, we established an in vivo mouse model using intradermal injection. On the basis of this model, we found that Wnt10b could induce the biological switch of hair follicles from telogen to anagen when overexpressed in the skin. The induced hair follicles expressed structure markers and could cycle normally into catagen. Conversely, anagen onset was abrogated by the knockdown of Wnt10b with small interfering RNA (siRNA). The Wnt10b aberrant expression data suggest that it is one of the activators of hair follicle regeneration. The b-catenin protein is translocated to the nucleus in Wnt10b-induced hair follicles. The biological effects of Wnt10b were abrogated when b-catenin expression was downregulated with siRNA. These data revealed that Wnt10b might induce hair follicle regeneration in vivo via the enhanced activation of the canonical Wnt signaling pathway. To our knowledge, our data provide previously unreported insights into the regulation of hair follicle cycling and provide potential therapeutic targets for hair follicle–related diseases. Journal of Investigative Dermatology (2013) 133, 42–48; doi:10.1038/jid.2012.235; published online 26 July 2012 INTRODUCTION Research on the regulation of the hair follicle cycle The hair follicle is a specific mini-organ appendage of the is important and urgently needed. -
Wnt Proteins Synergize to Activate Β-Catenin Signaling Anshula Alok1, Zhengdeng Lei1,2,*, N
© 2017. Published by The Company of Biologists Ltd | Journal of Cell Science (2017) 130, 1532-1544 doi:10.1242/jcs.198093 RESEARCH ARTICLE Wnt proteins synergize to activate β-catenin signaling Anshula Alok1, Zhengdeng Lei1,2,*, N. Suhas Jagannathan1,2, Simran Kaur1,‡, Nathan Harmston2, Steven G. Rozen1,2, Lisa Tucker-Kellogg1,2 and David M. Virshup1,3,§ ABSTRACT promoters and enhancers to drive expression with distinct Wnt ligands are involved in diverse signaling pathways that are active developmental timing and tissue specificity. However, in both during development, maintenance of tissue homeostasis and in normal and disease states, multiple Wnt genes are often expressed various disease states. While signaling regulated by individual Wnts in combination (Akiri et al., 2009; Bafico et al., 2004; Benhaj et al., has been extensively studied, Wnts are rarely expressed alone, 2006; Suzuki et al., 2004). For example, stromal cells that support the and the consequences of Wnt gene co-expression are not well intestinal stem cell niche express at least six different Wnts at the same understood. Here, we studied the effect of co-expression of Wnts on time (Kabiri et al., 2014). While in isolated instances, specific Wnt β the β-catenin signaling pathway. While some Wnts are deemed ‘non- pairs have been shown to combine to enhance -catenin signaling canonical’ due to their limited ability to activate β-catenin when during embryonic development, whether this is a general expressed alone, unexpectedly, we find that multiple Wnt combinations phenomenon remains unclear (Cha et al., 2008; Cohen et al., 2012; can synergistically activate β-catenin signaling in multiple cell types. -
Smac Mimetic Induces Cell Death in a Large Proportion of Primary Acute Myeloid Leukemia Samples, Which Correlates with Defined Molecular Markers
www.impactjournals.com/oncotarget/ Oncotarget, Vol. 7, No. 31 Research Paper Smac mimetic induces cell death in a large proportion of primary acute myeloid leukemia samples, which correlates with defined molecular markers Sonja C. Lueck1, Annika C. Russ1, Ursula Botzenhardt1, Richard F. Schlenk1, Kerry Zobel2, Kurt Deshayes2, Domagoj Vucic2, Hartmut Döhner1, Konstanze Döhner1, Simone Fulda3,4,5,*, Lars Bullinger1,* 1Department of Internal Medicine III, University Hospital Ulm, Ulm, Germany 2Early Discovery Biochemistry, Genentech, Inc., South San Francisco, CA, USA 3Institute for Experimental Cancer Research in Pediatrics, Goethe-University, Germany 4German Cancer Consortium (DKTK), Heidelberg, Germany 5German Cancer Research Center (DKFZ), Heidelberg, Germany *Shared senior authorship Correspondence to: Lars Bullinger, email: [email protected] Simone Fulda, email: [email protected] Keywords: smac mimetic, IAP proteins, apoptosis, acute myeloid leukemia (AML), gene expression profiling (GEP) Received: March 31, 2016 Accepted: June 13, 2016 Published: July 02, 2016 ABSTRACT Apoptosis is deregulated in most, if not all, cancers, including hematological malignancies. Smac mimetics that antagonize Inhibitor of Apoptosis (IAP) proteins have so far largely been investigated in acute myeloid leukemia (AML) cell lines; however, little is yet known on the therapeutic potential of Smac mimetics in primary AML samples. In this study, we therefore investigated the antileukemic activity of the Smac mimetic BV6 in diagnostic samples of 67 adult AML patients and correlated the response to clinical, cytogenetic and molecular markers and gene expression profiles. Treatment with cytarabine (ara-C) was used as a standard chemotherapeutic agent. Interestingly, about half (51%) of primary AML samples are sensitive to BV6 and 21% intermediate responsive, while 28% are resistant. -
CBF---A Biophysical Perspective
seminars in CELL & DEVELOPMENTAL BIOLOGY, Vol. 11, 2000: pp. 377–382 doi: 10.1006/scdb.2000.0182, available online at http://www.idealibrary.com on CBF—A biophysical perspective John H. Bushweller Core binding factor (CBF) is a heterodimeric transcription of all fetal and blood cell lineages in the mammalian factor consisting of a DNA-binding subunit (Runx, also embryo.6, 7 Chromosomal translocations involving referred to as CBFA, AML 1, PEBP2α) and a non- the RUNX1 and CBFB genes have been identified in DNA-binding subunit (CBFB). Biophysical characterization a substantial number of myeloid and lymphocytic of the two proteins and their interactions is providing leukemias.8 The clear importance of CBF in normal a detailed understanding of this important transcription development as well as in leukemia makes their factor at the molecular level. Measurements of the relevant biophysical characterization an essential component binding constants are helping to elucidate the mechanism of an overall effort to understand the functioning of of leukemogenesis associated with altered forms of these CBF both in its normal developmental role and in its proteins. Determination of the 3D structures of CBFB and role as an oncogene. the DNA- and CBFB-binding domain of Runx, referred to as the Runt domain, are providing a structural basis for the functioning of the two proteins of CBF. Stoichiometry and binding interactions Key words: core binding factor / CBF / Runx / AML1 / leukemia / hematopoiesis / structure Of necessity, any biophysical characterization must begin with establishing the stoichiometry of the c 2000 Academic Press interactions between the proteins of interest as well as the binding constants involved.