Pseudomugil Signifer) Herbert-Read JE, Ward AJW, Sumpter DJT
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Poster Abstracts
Poster abstracts P01 Penetration of a model membrane by a self-propelled active A. Daddi-Moussa-Ider particle P02 The squirmer model and beyond F. Fadda P03 Theoretical Investigation of Structure Formation by Magne- V. Telezki totactic Bacteria P04 Active Nematics Formed by Bacteria in Patterned R. Koizumi Chromonics P05 Self-propulsion of Camphor Symmetric Interfacial Swim- D. Boniface mers P06 Microswimmers self-propelled by Thermophoresis S. Roca-Bonet P07 Active Brownian filaments in dilute solution A. Mart´ın-Gomez´ P08 Scattering of E. coli at surfaces M. Mousavi P09 Light dependent motility of microalgae induces pattern for- A. Fragkopoulos mation in confinement P10 Longwave nonlinear theory for chemically active droplet di- M. Abu Hamed vision instability P11 Bead-spring modelling microswimmers S. Ziegler P12 Light-driven Janus microswimmers in dense colloidal ma- T. Huang trix P13 Active Brownian Particles in Crowded Media A. Liluashvili P14 Evolution in range expansions with competition at rough S. Chu boundaries P15 Mode-Coupling Theory for Active Brownian Particles J.Reichert P16 Structure and dynamics of a self-propelled semiflexible fil- S. P. Singh ament P17 IHRS Biosoft T. Auth P18 IHRS Biosoft T.Auth P19 Pairing, waltzing and scattering of chemotactic active col- S. Saha loids P20 Instability in settling array of discs R. Chajwa P21 Self-propelled particles in anisotropic environments A. R. Sprenger P22 A phase field crystal approach to active systems with inertia D. Arold P23 Ring polymers are much stronger depleting agents than lin- I. Chubak ear ones P24 Enhanced rotational diffusion of squirmers in viscoelastic K. Qi fluids P25 Dynamics of confined phoretic colloids K. -
Behavioural Plasticity and the Transition to Order in Jackdaw Flocks
ARTICLE https://doi.org/10.1038/s41467-019-13281-4 OPEN Behavioural plasticity and the transition to order in jackdaw flocks Hangjian Ling 1,2, Guillam E. Mclvor 3, Joseph Westley3, Kasper van der Vaart1, Richard T. Vaughan4, Alex Thornton 3* & Nicholas T. Ouellette 1* Collective behaviour is typically thought to arise from individuals following fixed interaction rules. The possibility that interaction rules may change under different circumstances has 1234567890():,; thus only rarely been investigated. Here we show that local interactions in flocks of wild jackdaws (Corvus monedula) vary drastically in different contexts, leading to distinct group- level properties. Jackdaws interact with a fixed number of neighbours (topological interac- tions) when traveling to roosts, but coordinate with neighbours based on spatial distance (metric interactions) during collective anti-predator mobbing events. Consequently, mobbing flocks exhibit a dramatic transition from disordered aggregations to ordered motion as group density increases, unlike transit flocks where order is independent of density. The relationship between group density and group order during this transition agrees well with a generic self- propelled particle model. Our results demonstrate plasticity in local interaction rules and have implications for both natural and artificial collective systems. 1 Department of Civil and Environmental Engineering, Stanford University, Stanford, CA 94305, USA. 2 Department of Mechanical Engineering, University of Massachusetts Dartmouth, North Dartmouth, -
A Comparison of Social Organization in Asian Elephants and African Savannah Elephants
Int J Primatol DOI 10.1007/s10764-011-9564-1 A Comparison of Social Organization in Asian Elephants and African Savannah Elephants Shermin de Silva & George Wittemyer Received: 1 June 2011 /Accepted: 16 September 2011 # Springer Science+Business Media, LLC 2012 Abstract Asian and African elephant species have diverged by ca. 6 million years, but as large, generalist herbivores they occupy similar niches in their respective environments. Although the multilevel, hierarchical nature of African savannah elephant societies is well established, it has been unclear whether Asian elephants behave similarly. Here we quantitatively compare the structure of both species’ societies using association data collected using the same protocol over similar time periods. Sociality in both species demonstrates well-defined structure, but in contrast to the African elephants of Samburu the Uda Walawe Asian elephants are found in smaller groups, do not maintain coherent core groups, demonstrate markedly less social connectivity at the population level, and are socially less influenced by seasonal differences in ecological conditions. The Uda Walawe Asian elephants, however, do maintain a complex, well-networked society consisting of ≥2 differentiated types of associates we term ephemeral and long-term affiliates. These findings imply we must broaden our recognition of multilevel social organization to encompass societies that fall along a gradient of nestedness, and not merely those that exhibit hierarchical nesting. This in turn suggests that multilevel structures may be more diverse and widespread than generally thought, and that phylogenetic comparisons within species-rich clades, such as that of primates, using the methods presented can provide fresh insights into their socioecological basis. -
Environmental Effects on Bacterial Communication and Communal Behavior
ENVIRONMENTAL EFFECTS ON BACTERIAL COMMUNICATION AND COMMUNAL BEHAVIOR by Eric Ka-On Chu A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland January 2019 © 2019 Eric Ka-On Chu All Rights Reserved Abstract Despite their autonomous nature, bacteria can often reside within complex, multicellular communities. One benefit of communal organization is the protection it offers from hazardous environments around the cells, which can come in the form of physical shielding or collective adaptive behaviors that arise from cell aggregation. This dissertation explores how environmental conditions itself might modulate or trigger these collective cell behaviors. We first explored how the environment can affect the active coordination of collective cell behavior, which involves cell-to-cell communication mechanisms such as quorum sensing (QS). Using a microfluidic platform to modulate the environment, we showed that existing explanations of environmental dependence pertaining to modulation of signal retention alone were inadequate in explaining the response. Instead, a dynamics- based analysis coupled with a mathematical model revealed a regulatory mechanism that is defined by the growth-mediated balance between synthesis and dilution of the signaling machinery proteins. This mechanism is able to account for the temporal and spatial properties observed during the onset and propagation of the collective response. These properties culminated in a cell education strategy that effectively combines response diversification with cell signaling to accelerate the onset of the collective cell behavior, which can have tremendous implications for the fitness of the cells that can exhibit this behavior. In addition, we also examined the effects of direct environmental cues, such as mechanical cues, on the emergence of collective cell behaviors. -
A Catalogue of Bacterial Swarm Behaviour
RESEARCH HIGHLIGHTS Nature Reviews Physics | https://doi.org/10.1038/s42254-020-0172- x | Published online 7 April 2020 ACTIVE MATTER A catalogue of bacterial swarm behaviour Even under adverse conditions length of its cells can be controlled such as starvation, some bacteria by known genetic manipulations. can efficiently expand and move This controllability enabled their colonies by rapidly migrating Be’er et al. to select between four en masse, a process known as cell aspect ratios for their colonies. Credit: Adapted from Be’er, A. et al. Commun. Phys. swarming. Although bacterial They recorded the motion of the 3, 66 (2020), CC BY 4.0 colonies have been studied by colonies on a surface for a range of physicists for years, there is not colony densities. Very sparse colonies of similar self-propelled rods with yet a complete picture of how the of B. subtilis do not move, whereas known interactions indicates that physical properties of the cells, very dense colonies are jammed. the bacterial behaviour is domina- such as their shape, govern the However, for intermediate densities, ted by short-range interactions. behaviour of the swarm. Now, cell aspect ratio plays a role in In contrast to long cells, shorter writing in Communications Physics, the colony’s behaviour. Longer cells swarm in clusters that have Avraham Be’er and colleagues fill cells form high-density clusters uniform density across the surface in another piece of the puzzle, of moving cells that are separated (lower panels of figure). Be’er et al. cataloguing the swarming behaviour by low- density regions containing posit that this uniform density of the rod-shaped Bacillus subtilis, only immobile cells (upper left arises because long-range hydro- as a function of the density of panel of figure). -
Spatial Effects, Sampling Errors, and Task Specialization in the Honey Bee
Insect. Soc. (2010) 57:239–248 DOI 10.1007/s00040-010-0077-2 Insectes Sociaux RESEARCH ARTICLE Spatial effects, sampling errors, and task specialization in the honey bee B. R. Johnson Received: 14 August 2009 / Revised: 23 January 2010 / Accepted: 28 January 2010 / Published online: 24 February 2010 Ó The Author(s) 2010. This article is published with open access at Springerlink.com Abstract Task allocation patterns should depend on the Introduction spatial distribution of work within the nest, variation in task demand, and the movement patterns of workers, however, Insect colonies exhibit some of the most sophisticated relatively little research has focused on these topics. This social organizations in nature. The largest societies consist study uses a spatially explicit agent based model to deter- of thousands to millions of workers and are often charac- mine whether such factors alone can generate biases in task terized by elaborate systems of division of labor (reviewed performance at the individual level in the honey bees, Apis in Beshers and Fewell, 2001). This social complexity is mellifera. Specialization (bias in task performance) is shown thought to underlie the great ecological success of these to result from strong sampling error due to localized task insects (Wilson and Ho¨lldobler, 2005). Within the topic of demand, relatively slow moving workers relative to nest size, division of labor, much attention has been paid to the role and strong spatial variation in task demand. To date, spe- played by specialists, workers with a bias for a particular cialization has been primarily interpreted with the response task (Visscher, 1983; Moore et al., 1987; Kolmes, 1989; threshold concept, which is focused on intrinsic (typically O’Donnell and Jeanne, 1992; Trumbo et al., 1997; Breed genotypic) differences between workers. -
The Honeybee As a Model for Understanding the Basis of Cognition
REVIEWS The honeybee as a model for understanding the basis of cognition Randolf Menzel Abstract | Honeybees contradict the notion that insect behaviour tends to be relatively inflexible and stereotypical. Indeed, they live in colonies and exhibit complex social, navigational and communication behaviours, as well as a relatively rich cognitive repertoire. Because these relatively complex behaviours are controlled by a brain consisting of only 1 million or so neurons, honeybees offer an opportunity to study the relationship between behaviour and cognition in neural networks that are limited in size and complexity. Most recently, the honeybee has been used to model learning and memory formation, highlighting its utility for neuroscience research, in particular for understanding the basis of cognition. Neuroethological research Small brains, like those of insects, are thought to con- 100 years, including seminal work from the laboratory Neuroethology recruits its trol behaviour by hard-wired neural connections deter- of Karl von Frisch5. Several important discoveries in questions and concepts mined by developmental programmes and triggered ethology were first made in honeybees, such as visual predominantly from field by external stimuli1. Such an argument assumes that detection of ultraviolet light, colour vision in an inver- studies that involve observing and analysing an animal’s experience-dependent rewiring of networks during tebrate, detection of linearly polarized light and com- behaviour under natural learning is more demanding and thus more ‘neuron munication with a symbolic behavioural routine. These conditions. An equivalent intensive’. That is, experience-dependent rewiring important discoveries — validated by the awarding laboratory model is then would require more extensive neuronal networks of the Nobel Prize to Karl von Frisch — have shaped devised that is compared and influenced by the results and larger numbers of neurons than are found in ethology throughout the past century and paved the from the field, ensuring the insect brain. -
Ant Colony Optimization
Morphogenetic Engineering: Biological Development as a new model of Programmed Self-Organization René Doursat CNRS – Complex Systems Institute, Paris – Ecole Polytechnique Susan Stepney, York Stanislaw Ulam [said] that using a term like nonlinear science is like referring to the bulk of zoology as the study of non-elephant animals. The elephant in the room here is the classical Turing machine. Unconventional computation is a similar term: the study of non-Turing computation. The classical Turing machine was developed as an abstraction of how human “computers”, clerks following predefined and prescriptive rules, calculated various mathematical tables. Unconventional computation can be inspired by the whole of wider nature. We can look to physics (...), to chemistry (reaction-diffusion systems, complex chemical reactions, DNA binding), and to biology (bacteria, flocks, social insects, evolution, growth and self-assembly, immune systems, neural systems), to mention just a few. PARALLELISM – INTERACTION – NATURE → COMPLEX SYSTEMS 2 COMPLEX SYSTEMS & COMPUTATION 1. What are Complex Systems? • Decentralization • Emergence • Self-organization 3 1. What are Complex Systems? Complex systems can be found everywhere around us a) decentralization: the system is made of myriads of "simple" agents (local information, local rules, local interactions) b) emergence: function is a bottom-up collective effect of the agents (asynchrony, homeostasis, combinatorial creativity) c) self-organization: the system operates and changes on its own (autonomy, -
Machine Learning for Active Matter
REVIEW ARTICLE https://doi.org/10.1038/s42256-020-0146-9 Machine learning for active matter Frank Cichos 1, Kristian Gustavsson 2, Bernhard Mehlig2 and Giovanni Volpe 2 The availability of large datasets has boosted the application of machine learning in many fields and is now starting to shape active-matter research as well. Machine learning techniques have already been successfully applied to active-matter data—for example, deep neural networks to analyse images and track objects, and recurrent nets and random forests to analyse time series. Yet machine learning can also help to disentangle the complexity of biological active matter, helping, for example, to establish a relation between genetic code and emergent bacterial behaviour, to find navigation strategies in complex environ- ments, and to map physical cues to animal behaviours. In this Review, we highlight the current state of the art in the applica- tion of machine learning to active matter and discuss opportunities and challenges that are emerging. We also emphasize how active matter and machine learning can work together for mutual benefit. he past decade has seen a significant increase in the amount their local environment to perform mechanical work7. Natural sys- of experimental data gathered in the natural sciences, as well tems, from molecular motors, to cells and bacteria, to fish, birds and Tas in the computer resources used to store and analyse these other organisms, are intrinsically out of thermodynamic equilib- data. Prompted by this development, data-driven machine-learning rium as they convert chemical energy. Their biochemical networks methods are beginning to be widely used in the natural sciences, and sensory systems are optimized by evolution to perform specific for example in condensed-matter physics1,2, microscopy3,4, fluid tasks: in the case of motile microorganisms, for example to cope mechanics5 and biology6. -
The Environment Topography Alters the Transition from Single-Cell Populations to Multicellular Structures in Myxococcus Xanthus
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.27.428527; this version posted January 28, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. The environment topography alters the transition from single-cell populations to multicellular structures in Myxococcus xanthus Hernández Ramos, Karla C.1,2∞, Rodríguez-Sánchez, Edna2,3∞, Arias del Angel, Juan Antonio2, Arzola, Alejandro V.4, Benítez, Mariana2, Escalante, Ana E.2, Franci, Alessio5, Volpe, Giovanni6, Rivera-Yoshida, Natsuko2,5*. 1 Facultad de Ciencias, Universidad Nacional Autónoma de México, Mexico. 2 Laboratorio Nacional de Ciencias de la Sostenibilidad, Instituto de Ecología, Universidad Nacional Autónoma de México, CDMX, México 04510, Mexico. 3 Current address: Posgrado en Ciencias Biológicas, Instituto de Geología, Universidad Nacional Autónoma de México, Mexico City, 04510, Mexico. 4 Instituto de Física, Universidad Nacional Autónoma de México, Apdo Postal 20-364, 01000 Cd de México, Mexico. 5 Departamento de Matemáticas, Facultad de Ciencias, Universidad Nacional Autónoma de México, Mexico. 6 Department of Physics, University of Gothenburg, Gothenburg, Sweden. ∞ Both authors equally contributed to this work * Corresponding author: [email protected], [email protected] ABSTRACT The social soil-dwelling bacteria Myxococcus xanthus can form multicellular structures, known as fruiting bodies. Experiments in homogeneous environments have shown that this process is affected by the physico-chemical properties of the substrate, but they have largely neglected the role of complex topographies. -
Neotoma Fuscipes)
Journal of Mammalogy, 93(2):439–446, 2012 Genetic relatedness and spatial associations of dusky-footed woodrats (Neotoma fuscipes) ROBIN J. INNES,* MARY BROOKE MCEACHERN,DIRK H. VAN VUREN,JOHN M. EADIE,DOUGLAS A. KELT, AND MICHAEL L. JOHNSON Department of Wildlife, Fish, and Conservation Biology, University of California, One Shields Avenue, Davis, CA 95616, USA (RJI, MBM, DHV, JME, DAK) John Muir Institute of the Environment, Aquatic Ecosystem Analysis Laboratory, University of California, One Shields Avenue, Davis, CA 95616, USA (MLJ) Present address of RJI: United States Department of Agriculture Forest Service, Rocky Mountain Research Center, Fire Sciences Laboratory, 5775 US Highway 10 W, Missoula, MT 59808, USA Present address of MBM: John Muir Institute of the Environment, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA Present address of MLJ: Michael L. Johnson, LLC, 632 Cantrill Drive, Davis, CA 95618, USA * Correspondent: [email protected] We studied the association between space sharing and kinship in a solitary rodent, the dusky-footed woodrat (Neotoma fuscipes). Genetic relatedness was inversely correlated with geographic distance for female woodrats but not for males, a pattern consistent with female philopatry and male dispersal. However, some female neighbors were unrelated, suggesting the possibility of female dispersal. Relatedness of female dyads was positively correlated with overlap of their home ranges and core areas, indicating that females were more likely to share space with relatives, whereas males showed no correlation between relatedness and the sharing of either home ranges or core areas. However, some females that shared space were not close relatives, and some closely related males shared space. -
Colony Social Organization and Population Genetic Structure of an Introduced Population of Formosan Subterranean Termite from New Orleans, Louisiana
APICULTURE AND SOCIAL INSECTS Colony Social Organization and Population Genetic Structure of an Introduced Population of Formosan Subterranean Termite from New Orleans, Louisiana CLAUDIA HUSSENEDER,1 MATTHEW T. MESSENGER,2 NAN-YAO SU,3 J. KENNETH GRACE,4 5 AND EDWARD L. VARGO J. Econ. Entomol. 98(5): 1421Ð1434 (2005) ABSTRACT The Formosan subterranean termite, Coptotermes formosanus Shiraki, is an invasive species in many parts of the world, including the U.S. mainland. The reasons for its invasive success may have to do with the ßexible social and spatial organization of colonies. We investigated the population and breeding structure of 14 C. formosanus colonies in Louis Armstrong Park, New Orleans, LA. This population has been the focus of extensive study for many years, providing the opportunity to relate aspects of colony breeding structure to previous Þndings on colony characteristics such as body weight and number of workers, wood consumption, and intercolony aggression. Eight colonies were headed by a single pair of outbred reproductives (simple families), whereas six colonies were headed by low numbers of multiple kings and/or queens that were likely the neotenic descendants of the original colony (extended families). Within the foraging area of one large extended family colony, we found genetic differentiation among different collection sites, suggesting the presence of separate reproductive centers. No signiÞcant difference between simple family colonies and extended family colonies was found in worker body weight, soldier body weight, foraging area, population size, or wood consumption. However, level of inbreeding within colonies was negatively correlated with worker body weight and positively correlated with wood consumption.