Land‐Plant Relationships and Provide New Insights Into Bryoph
RESEARCH ARTICLE Organellomic data sets confrm a cryptic consensus on (unrooted) land-plant relationships and provide new insights into bryophyte molecular evolution David Bell1,2,3 , Qianshi Lin1,2 , Wesley K. Gerelle1,2 , Steve Joya1, Ying Chang1,4 , Z. Nathan Taylor5, Carl J. Rothfels6, Anders Larsson7 , Juan Carlos Villarreal8,9, Fay-Wei Li10,11 , Lisa Pokorny12,13 , Péter Szövényi14, Barbara Crandall-Stotler15, Lisa DeGironimo16, Sandra K. Floyd17, David J. Beerling18, Michael K. Deyholos19 , Matt von Konrat20 , Shona Ellis1, A. Jonathan Shaw21, Tao Chen22, Gane K.-S. Wong23,24,25 , Dennis W. Stevenson26, Jefrey D. Palmer5 , and Sean W. Graham1,2,27 Manuscript received 4 June 2019; revision accepted 4 November 2019. PREMISE: Phylogenetic trees of bryophytes provide important evolutionary context for 1 Department of Botany, University of British Columbia, 6270 land plants. However, published inferences of overall embryophyte relationships vary University Boulevard, Vancouver, British Columbia V6T 1Z4, Canada considerably. We performed phylogenomic analyses of bryophytes and relatives using 2 UBC Botanical Garden and Centre for Plant Research, University both mitochondrial and plastid gene sets, and investigated bryophyte plastome evolution. of British Columbia, 6804 Marine Drive SW, Vancouver, British Columbia V6T 1Z4, Canada METHODS: We employed diverse likelihood-based analyses to infer large-scale bryophyte 3 Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR, UK phylogeny for mitochondrial and plastid data sets. We tested for changes in purifying 4 Department of Botany and Plant Pathology, Oregon State University, selection in plastid genes of a mycoheterotrophic liverwort (Aneura mirabilis) and a Corvallis, Oregon 97331, USA putatively mycoheterotrophic moss (Buxbaumia), and compared 15 bryophyte plastomes 5 Department of Biology, Indiana University, Bloomington, Indiana for major structural rearrangements.
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