CD93 Negatively Regulates Astrogenesis in Response to MMRN2 Through the Transcriptional Repressor ZFP503 in the Developing Brain
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Screening and Identification of Key Biomarkers in Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.21.423889; this version posted December 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Screening and identification of key biomarkers in clear cell renal cell carcinoma based on bioinformatics analysis Basavaraj Vastrad1, Chanabasayya Vastrad*2 , Iranna Kotturshetti 1. Department of Biochemistry, Basaveshwar College of Pharmacy, Gadag, Karnataka 582103, India. 2. Biostatistics and Bioinformatics, Chanabasava Nilaya, Bharthinagar, Dharwad 580001, Karanataka, India. 3. Department of Ayurveda, Rajiv Gandhi Education Society`s Ayurvedic Medical College, Ron, Karnataka 562209, India. * Chanabasayya Vastrad [email protected] Ph: +919480073398 Chanabasava Nilaya, Bharthinagar, Dharwad 580001 , Karanataka, India bioRxiv preprint doi: https://doi.org/10.1101/2020.12.21.423889; this version posted December 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Clear cell renal cell carcinoma (ccRCC) is one of the most common types of malignancy of the urinary system. The pathogenesis and effective diagnosis of ccRCC have become popular topics for research in the previous decade. In the current study, an integrated bioinformatics analysis was performed to identify core genes associated in ccRCC. An expression dataset (GSE105261) was downloaded from the Gene Expression Omnibus database, and included 26 ccRCC and 9 normal kideny samples. Assessment of the microarray dataset led to the recognition of differentially expressed genes (DEGs), which was subsequently used for pathway and gene ontology (GO) enrichment analysis. -
Human and Mouse CD Marker Handbook Human and Mouse CD Marker Key Markers - Human Key Markers - Mouse
Welcome to More Choice CD Marker Handbook For more information, please visit: Human bdbiosciences.com/eu/go/humancdmarkers Mouse bdbiosciences.com/eu/go/mousecdmarkers Human and Mouse CD Marker Handbook Human and Mouse CD Marker Key Markers - Human Key Markers - Mouse CD3 CD3 CD (cluster of differentiation) molecules are cell surface markers T Cell CD4 CD4 useful for the identification and characterization of leukocytes. The CD CD8 CD8 nomenclature was developed and is maintained through the HLDA (Human Leukocyte Differentiation Antigens) workshop started in 1982. CD45R/B220 CD19 CD19 The goal is to provide standardization of monoclonal antibodies to B Cell CD20 CD22 (B cell activation marker) human antigens across laboratories. To characterize or “workshop” the antibodies, multiple laboratories carry out blind analyses of antibodies. These results independently validate antibody specificity. CD11c CD11c Dendritic Cell CD123 CD123 While the CD nomenclature has been developed for use with human antigens, it is applied to corresponding mouse antigens as well as antigens from other species. However, the mouse and other species NK Cell CD56 CD335 (NKp46) antibodies are not tested by HLDA. Human CD markers were reviewed by the HLDA. New CD markers Stem Cell/ CD34 CD34 were established at the HLDA9 meeting held in Barcelona in 2010. For Precursor hematopoetic stem cell only hematopoetic stem cell only additional information and CD markers please visit www.hcdm.org. Macrophage/ CD14 CD11b/ Mac-1 Monocyte CD33 Ly-71 (F4/80) CD66b Granulocyte CD66b Gr-1/Ly6G Ly6C CD41 CD41 CD61 (Integrin b3) CD61 Platelet CD9 CD62 CD62P (activated platelets) CD235a CD235a Erythrocyte Ter-119 CD146 MECA-32 CD106 CD146 Endothelial Cell CD31 CD62E (activated endothelial cells) Epithelial Cell CD236 CD326 (EPCAM1) For Research Use Only. -
NKG2D Promotes B1a Cell Development and Protection
NKG2D Promotes B1a Cell Development and Protection against Bacterial Infection Maja Lenartic, Vedrana Jelencic, Biljana Zafirova, Mateja Ozanic, Valentina Marecic, Slaven Jurkovic, Veronika Sexl, This information is current as Marina Santic, Felix M. Wensveen and Bojan Polic of September 25, 2021. J Immunol 2017; 198:1531-1542; Prepublished online 13 January 2017; doi: 10.4049/jimmunol.1600461 http://www.jimmunol.org/content/198/4/1531 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2017/01/12/jimmunol.160046 Material 1.DCSupplemental http://www.jimmunol.org/ References This article cites 45 articles, 18 of which you can access for free at: http://www.jimmunol.org/content/198/4/1531.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 25, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2017 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology NKG2D Promotes B1a Cell Development and Protection against Bacterial Infection Maja Lenartic´,* Vedrana Jelencic´,* Biljana Zafirova,*,† Mateja Ozanic,‡ Valentina Marecic´,‡ Slaven Jurkovic´,x Veronika Sexl,{ Marina Santic ´,‡ Felix M. -
CD93 and Dystroglycan Cooperation in Human Endothelial Cell Adhesion and Migration
www.impactjournals.com/oncotarget/ Oncotarget, Vol. 7, No. 9 CD93 and dystroglycan cooperation in human endothelial cell adhesion and migration Federico Galvagni1,*, Federica Nardi1,*, Marco Maida1, Giulia Bernardini1, Silvia Vannuccini2, Felice Petraglia2, Annalisa Santucci1, Maurizio Orlandini1 1 Department of Biotechnology, Chemistry and Pharmacy, University of Siena, 2-53100 Siena, Italy 2 Department of Molecular and Developmental Medicine, Obstetrics and Gynecology, University of Siena, 53100 Siena, Italy *These authors contributed equally to this work Correspondence to: Maurizio Orlandini, e-mail: [email protected] Keywords: angiogenesis, signal transduction, C1qRp, Src, Cbl Received: June 29, 2015 Accepted: January 22, 2016 Published: February 02, 2016 ABSTRACT CD93 is a transmembrane glycoprotein predominantly expressed in endothelial cells. Although CD93 displays proangiogenic activity, its molecular function in angiogenesis still needs to be clarified. To get molecular insight into the biological role of CD93 in the endothelium, we performed proteomic analyses to examine changes in the protein profile of endothelial cells after CD93 silencing. Among differentially expressed proteins, we identified dystroglycan, a laminin-binding protein involved in angiogenesis, whose expression is increased in vascular endothelial cells within malignant tumors. Using immunofluorescence, FRET, and proximity ligation analyses, we observed a close interaction between CD93 and β-dystroglycan. Moreover, silencing experiments showed that CD93 and dystroglycan promoted endothelial cell migration and organization into capillary-like structures. CD93 proved to be phosphorylated on tyrosine 628 and 644 following cell adhesion on laminin through dystroglycan. This phosphorylation was shown to be necessary for a proper endothelial migratory phenotype. Moreover, we showed that during cell spreading phosphorylated CD93 recruited the signaling protein Cbl, which in turn was phosphorylated on tyrosine 774. -
Global H3k4me3 Genome Mapping Reveals Alterations of Innate Immunity Signaling and Overexpression of JMJD3 in Human Myelodysplastic Syndrome CD34 Þ Cells
Leukemia (2013) 27, 2177–2186 & 2013 Macmillan Publishers Limited All rights reserved 0887-6924/13 www.nature.com/leu ORIGINAL ARTICLE Global H3K4me3 genome mapping reveals alterations of innate immunity signaling and overexpression of JMJD3 in human myelodysplastic syndrome CD34 þ cells YWei1, R Chen2, S Dimicoli1, C Bueso-Ramos3, D Neuberg4, S Pierce1, H Wang2, H Yang1, Y Jia1, H Zheng1, Z Fang1, M Nguyen3, I Ganan-Gomez1,5, B Ebert6, R Levine7, H Kantarjian1 and G Garcia-Manero1 The molecular bases of myelodysplastic syndromes (MDS) are not fully understood. Trimethylated histone 3 lysine 4 (H3K4me3) is present in promoters of actively transcribed genes and has been shown to be involved in hematopoietic differentiation. We performed a genome-wide H3K4me3 CHIP-Seq (chromatin immunoprecipitation coupled with whole genome sequencing) analysis of primary MDS bone marrow (BM) CD34 þ cells. This resulted in the identification of 36 genes marked by distinct higher levels of promoter H3K4me3 in MDS. A majority of these genes are involved in nuclear factor (NF)-kB activation and innate immunity signaling. We then analyzed expression of histone demethylases and observed significant overexpression of the JmjC-domain histone demethylase JMJD3 (KDM6b) in MDS CD34 þ cells. Furthermore, we demonstrate that JMJD3 has a positive effect on transcription of multiple CHIP-Seq identified genes involved in NF-kB activation. Inhibition of JMJD3 using shRNA in primary BM MDS CD34 þ cells resulted in an increased number of erythroid colonies in samples isolated from patients with lower-risk MDS. Taken together, these data indicate the deregulation of H3K4me3 and associated abnormal activation of innate immunity signals have a role in the pathogenesis of MDS and that targeting these signals may have potential therapeutic value in MDS. -
Capacity of Human Dendritic Cells Uptake Receptor Expression And
The Novel Cyclophilin-Binding Drug Sanglifehrin A Specifically Affects Antigen Uptake Receptor Expression and Endocytic Capacity of Human Dendritic Cells This information is current as of September 25, 2021. Andrea M. Woltman, Nicole Schlagwein, Sandra W. van der Kooij and Cees van Kooten J Immunol 2004; 172:6482-6489; ; doi: 10.4049/jimmunol.172.10.6482 http://www.jimmunol.org/content/172/10/6482 Downloaded from References This article cites 44 articles, 20 of which you can access for free at: http://www.jimmunol.org/content/172/10/6482.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 25, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2004 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology The Novel Cyclophilin-Binding Drug Sanglifehrin A Specifically Affects Antigen Uptake Receptor Expression and Endocytic Capacity of Human Dendritic Cells1 Andrea M. Woltman,2 Nicole Schlagwein, Sandra W. van der Kooij, and Cees van Kooten Sanglifehrin A (SFA) is a recently developed immunosuppressant that belongs to the family of immunophilin-binding ligands. -
Multimerin-2 Is a Ligand for Group 14 Family C-Type Lectins CLEC14A, CD93 and CD248 Spanning the Endothelial Pericyte Interface
OPEN Oncogene (2017) 36, 6097–6108 www.nature.com/onc ORIGINAL ARTICLE Multimerin-2 is a ligand for group 14 family C-type lectins CLEC14A, CD93 and CD248 spanning the endothelial pericyte interface KA Khan1, AJ Naylor2, A Khan1, PJ Noy1, M Mambretti1, P Lodhia1, J Athwal1, A Korzystka1, CD Buckley2, BE Willcox3, F Mohammed3 and R Bicknell1 TheC-typelectindomaincontaininggroup14familymembers CLEC14A and CD93 are proteins expressed by endothelium and are implicated in tumour angiogenesis. CD248 (alternatively known as endosialin or tumour endothelial marker-1) is also a member of this family and is expressed by tumour-associated fibroblasts and pericytes. Multimerin-2 (MMRN2) is a unique endothelial specific extracellular matrix protein that has been implicated in angiogenesis and tumour progression. We show that the group 14 C-type lectins CLEC14A, CD93 and CD248 directly bind to MMRN2 and only thrombomodulin of the family does not. Binding to MMRN2 is dependent on a predicted long-loop region in the C-type lectin domainandisabrogatedbymutationwithinthedomain. CLEC14A and CD93 bind to the same non-glycosylated coiled-coil region of MMRN2, but the binding of CD248 occurs on a distinct non-competing region. CLEC14A and CD248 can bind MMRN2 simultaneously and this occurs at the interface between endothelium and pericytes in human pancreatic cancer. A recombinant peptide of MMRN2 spanning the CLEC14A and CD93 binding region blocks CLEC14A extracellular domain binding to the endothelial cellsurfaceaswellasincreasingadherenceofhumanumbilical vein endothelial cells to the active peptide. This MMRN2 peptide is anti-angiogenic in vitro and reduces tumour growth in mouse models. These findings identify novel protein interactions involving CLEC14A, CD93 and CD248 with MMRN2 as targetable components of vessel formation. -
CD Markers Are Routinely Used for the Immunophenotyping of Cells
ptglab.com 1 CD MARKER ANTIBODIES www.ptglab.com Introduction The cluster of differentiation (abbreviated as CD) is a protocol used for the identification and investigation of cell surface molecules. So-called CD markers are routinely used for the immunophenotyping of cells. Despite this use, they are not limited to roles in the immune system and perform a variety of roles in cell differentiation, adhesion, migration, blood clotting, gamete fertilization, amino acid transport and apoptosis, among many others. As such, Proteintech’s mini catalog featuring its antibodies targeting CD markers is applicable to a wide range of research disciplines. PRODUCT FOCUS PECAM1 Platelet endothelial cell adhesion of blood vessels – making up a large portion molecule-1 (PECAM1), also known as cluster of its intracellular junctions. PECAM-1 is also CD Number of differentiation 31 (CD31), is a member of present on the surface of hematopoietic the immunoglobulin gene superfamily of cell cells and immune cells including platelets, CD31 adhesion molecules. It is highly expressed monocytes, neutrophils, natural killer cells, on the surface of the endothelium – the thin megakaryocytes and some types of T-cell. Catalog Number layer of endothelial cells lining the interior 11256-1-AP Type Rabbit Polyclonal Applications ELISA, FC, IF, IHC, IP, WB 16 Publications Immunohistochemical of paraffin-embedded Figure 1: Immunofluorescence staining human hepatocirrhosis using PECAM1, CD31 of PECAM1 (11256-1-AP), Alexa 488 goat antibody (11265-1-AP) at a dilution of 1:50 anti-rabbit (green), and smooth muscle KD/KO Validated (40x objective). alpha-actin (red), courtesy of Nicola Smart. PECAM1: Customer Testimonial Nicola Smart, a cardiovascular researcher “As you can see [the immunostaining] is and a group leader at the University of extremely clean and specific [and] displays Oxford, has said of the PECAM1 antibody strong intercellular junction expression, (11265-1-AP) that it “worked beautifully as expected for a cell adhesion molecule.” on every occasion I’ve tried it.” Proteintech thanks Dr. -
HOD1164 Biorad Mouse Poster A0 V2.Indd
Biomarker Expression Patterns in Mouse Immune Cells Non Non Non Cells Cells Cells T Cells T Cells T Cells T B Cells B Cells B Cells B NK Cells Cells NK Cells NK Cells NK Mast Cells Mast Cells Mast Cells Mast and Innate and Innate and Innate Stem Cells, Cells, Stem Cells, Stem Cells, Stem Progenitors Progenitors Progenitors Myeloid and Myeloid and Myeloid and Hematopoietic Hematopoietic Hematopoietic Hematopoietic Erythroid Cells Erythroid Cells Erythroid Cells Lymphoid Cells Lymphoid Cells Lymphoid Cells Lymphoid Precursors and and Precursors and Precursors and Precursors Megakaryocyte Megakaryocyte Megakaryocyte Presenting Cells Presenting Cells Presenting Cells Specialist Antigen Antigen Specialist Antigen Specialist Antigen Specialist Markers Markers Markers Langerhans cells Langerhans cells Langerhans cells Langerhans LT-HSC GMP CMP CLP MEP MPP cells B cells B Pro/Pre dendritic cells Myeloid dendriticPlasmacytoid cells Eosinophil Neutrophil Basophil Macrophage Monocyte Granulocyte cellsMast cells NK cells NK Precursor lymphoid progenitor Innate lymphoid cells Innate cells T Double negative thymocyte Double positive thymocyte Gamma/Delta cells T NKT cells Megakaryocyte Platelets Proerythroblast Erythrocyte Endothelial cells Epithelial cells LT-HSC GMP CMP CLP MEP MPP cells B cells B Pro/Pre dendritic cells Myeloid dendriticPlasmacytoid cells Eosinophil Neutrophil Basophil Macrophage Monocyte Granulocyte cellsMast cells NK cells NK Precursor lymphoid progenitor Innate lymphoid cells Innate cells T Double negative thymocyte Double positive -
Defining the Role of CD47 and Sirpα in Murine B Cell Homeostasis
Defining the role of CD47 and SIRPα in murine B cell homeostasis Shrikant Shantilal Kolan Department of Integrative Medical Biology Umeå 2015 Responsible publisher under swedish law: the Dean of the Medical Faculty This work is protected by the Swedish Copyright Legislation (Act 1960:729) ISBN: 978-91-7601-324-3 ISSN: 0346-6612 Elektronisk version tillgänglig på http://umu.diva-portal.org/ Tryck/Printed by: Print and Media Umeå, Sweden 2015 Dedicated to my Family Table of Contents TABLE OF CONTENTS .............................................................................................. I ABSTRACT ............................................................................................................. V ABBREVIATIONS .................................................................................................. VII LIST OF ORIGINAL PUBLICATIONS ......................................................................... IX BACKGROUND ....................................................................................................... 1 IMMUNITY, THE IMMUNE SYSTEM AND IMMUNE CELLS ....................................................... 1 LYMPHOID ORGANS ..................................................................................................... 2 Primary lymphoid organs ................................................................................... 2 Secondary lymphoid organs ............................................................................... 3 MATURE B CELL POPULATIONS ...................................................................................... -
The Small Gtpase Rab5c Is a Key Regulator of Trafficking of the CD93
Barbera et al. Cell Communication and Signaling (2019) 17:55 https://doi.org/10.1186/s12964-019-0375-x RESEARCH Open Access The small GTPase Rab5c is a key regulator of trafficking of the CD93/Multimerin-2/β1 integrin complex in endothelial cell adhesion and migration Stefano Barbera1, Federica Nardi1, Ines Elia1, Giulia Realini1, Roberta Lugano2, Annalisa Santucci1, Gian Marco Tosi3, Anna Dimberg2, Federico Galvagni1* and Maurizio Orlandini1* Abstract Background: In the endothelium, the single-pass membrane protein CD93, through its interaction with the extracellular matrix protein Multimerin-2, activates signaling pathways that are critical for vascular development and angiogenesis. Trafficking of adhesion molecules through endosomal compartments modulates their signaling output. However, the mechanistic basis coordinating CD93 recycling and its implications for endothelial cell (EC) function remain elusive. Methods: Human umbilical vein ECs (HUVECs) and human dermal blood ECs (HDBEC) were used in this study. Fluorescence confocal microscopy was employed to follow CD93 retrieval, recycling, and protein colocalization in spreading cells. To better define CD93 trafficking, drug treatments and transfected chimeric wild type and mutant CD93 proteins were used. The scratch assay was used to evaluate cell migration. Gene silencing strategies, flow citometry, and quantification of migratory capability were used to determine the role of Rab5c during CD93 recycling to the cell surface. Results: Here, we identify the recycling pathway of CD93 following EC adhesion and migration. We show that the cytoplasmic domain of CD93, by its interaction with Moesin and F-actin, is instrumental for CD93 retrieval in adhering and migrating cells and that aberrant endosomal trafficking of CD93 prevents its localization at the leading edge of migration. -
Platelets and the Complement Cascade in Atherosclerosis
REVIEW ARTICLE published: 02 March 2015 doi: 10.3389/fphys.2015.00049 Platelets and the complement cascade in atherosclerosis Johannes Patzelt 1, Admar Verschoor 2* and Harald F. Langer 1,3* 1 University Clinic for Cardiovascular Medicine, University of Tuebingen, Tuebingen, Germany 2 Institute for Medical Microbiology, Immunology and Hygiene, Technische Universität München, Munich, Germany 3 Section for Cardioimmunology, Department of Cardiovascular Medicine, University of Tuebingen, Tuebingen, Germany Edited by: Atherosclerosis and its late sequels are still the number one cause of death in western Christian A. Gleissner, University of societies. Platelets are a driving force not only during the genesis of atherosclerosis, Heidelberg, Germany but especially in its late stages, as evidenced by complications such as arterial Reviewed by: thrombosis, myocardial infarction, and ischemic stroke. Atherosclerosis is increasingly Klaus Ley, La Jolla Institute for Allergy and Immunology, USA recognized as an inflammatory disease, influenced by various immune mechanisms. Irena Levitan, University of Illinois at The complement system is part of our innate immune system, and its diverse roles Chicago, USA in atherosclerosis have become evident over the past years. In this review we identify *Correspondence: points of intersection between platelets and the complement system and discuss their Admar Verschoor, Institute for relevance for atherosclerosis. Specifically, we will focus on roles for platelets in the onset Medical Microbiology, Immunology and Hygiene, Technische Universität as well as progression of the disease, a possible dual role for complement in the genesis München, Trogerstr. 30, 81675 and development of atherosclerosis, and review emerging literature revealing previously Munich, Germany unrecognized cross-talk between platelets and the complement system and discuss its e-mail: [email protected]; possible impact for atherosclerosis.