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Population Biology of Switchgrass Rust
POPULATION BIOLOGY OF SWITCHGRASS RUST (Puccinia emaculata Schw.) By GABRIELA KARINA ORQUERA DELGADO Bachelor of Science in Biotechnology Escuela Politécnica del Ejército (ESPE) Quito, Ecuador 2011 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE July, 2014 POPULATION BIOLOGY OF SWITCHGRASS RUST (Puccinia emaculata Schw.) Thesis Approved: Dr. Stephen Marek Thesis Adviser Dr. Carla Garzon Dr. Robert M. Hunger ii ACKNOWLEDGEMENTS For their guidance and support, I express sincere gratitude to my supervisor, Dr. Marek, who has supported thought my thesis with his patience and knowledge whilst allowing me the room to work in my own way. One simply could not wish for a better or friendlier supervisor. I give special thanks to M.S. Maxwell Gilley (Mississippi State University), Dr. Bing Yang (Iowa State University), Arvid Boe (South Dakota State University) and Dr. Bingyu Zhao (Virginia State), for providing switchgrass rust samples used in this study and M.S. Andrea Payne, for her assistance during my writing process. I would like to recognize Patricia Garrido and Francisco Flores for their guidance, assistance, and friendship. To my family and friends for being always the support and energy I needed to follow my dreams. iii Acknowledgements reflect the views of the author and are not endorsed by committee members or Oklahoma State University. Name: GABRIELA KARINA ORQUERA DELGADO Date of Degree: JULY, 2014 Title of Study: POPULATION BIOLOGY OF SWITCHGRASS RUST (Puccinia emaculata Schw.) Major Field: ENTOMOLOGY AND PLANT PATHOLOGY Abstract: Switchgrass (Panicum virgatum L.) is a perennial warm season grass native to a large portion of North America. -
Fungi Determined in Ankara University Tandoğan Campus Area (Ankara-Turkey)
http://dergipark.gov.tr/trkjnat Trakya University Journal of Natural Sciences, 20(1): 47-55, 2019 ISSN 2147-0294, e-ISSN 2528-9691 Research Article DOI: 10.23902/trkjnat.521256 FUNGI DETERMINED IN ANKARA UNIVERSITY TANDOĞAN CAMPUS AREA (ANKARA-TURKEY) Ilgaz AKATA1*, Deniz ALTUNTAŞ1, Şanlı KABAKTEPE2 1Ankara University, Faculty of Science, Department of Biology, Ankara, TURKEY 2Turgut Ozal University, Battalgazi Vocational School, Battalgazi, Malatya, TURKEY *Corresponding author: ORCID ID: orcid.org/0000-0002-1731-1302, e-mail: [email protected] Cite this article as: Akata I., Altuntaş D., Kabaktepe Ş. 2019. Fungi Determined in Ankara University Tandoğan Campus Area (Ankara-Turkey). Trakya Univ J Nat Sci, 20(1): 47-55, DOI: 10.23902/trkjnat.521256 Received: 02 February 2019, Accepted: 14 March 2019, Online First: 15 March 2019, Published: 15 April 2019 Abstract: The current study is based on fungi and infected host plant samples collected from Ankara University Tandoğan Campus (Ankara) between 2017 and 2019. As a result of the field and laboratory studies, 148 fungal species were identified. With the addition of formerly recorded 14 species in the study area, a total of 162 species belonging to 87 genera, 49 families, and 17 orders were listed. Key words: Ascomycota, Basidiomycota, Ankara, Turkey. Özet: Bu çalışma, Ankara Üniversitesi Tandoğan Kampüsü'nden (Ankara) 2017 ve 2019 yılları arasında toplanan mantar ve enfekte olmuş konukçu bitki örneklerine dayanmaktadır. Arazi ve laboratuvar çalışmaları sonucunda 148 mantar türü tespit edilmiştir. Daha önce bildirilen 14 tür dahil olmak üzere 17 ordo, 49 familya, 87 cinse mensup 162 tür listelenmiştir. Introduction Ankara, the capital city of Turkey, is situated in the compiled literature data were published as checklists in center of Anatolia, surrounded by Çankırı in the north, different times (Bahçecioğlu & Kabaktepe 2012, Doğan Bolu in the northwest, Kırşehir, and Kırıkkale in the east, et al. -
Master Thesis
Swedish University of Agricultural Sciences Faculty of Natural Resources and Agricultural Sciences Department of Forest Mycology and Plant Pathology Uppsala 2011 Taxonomic and phylogenetic study of rust fungi forming aecia on Berberis spp. in Sweden Iuliia Kyiashchenko Master‟ thesis, 30 hec Ecology Master‟s programme SLU, Swedish University of Agricultural Sciences Faculty of Natural Resources and Agricultural Sciences Department of Forest Mycology and Plant Pathology Iuliia Kyiashchenko Taxonomic and phylogenetic study of rust fungi forming aecia on Berberis spp. in Sweden Uppsala 2011 Supervisors: Prof. Jonathan Yuen, Dept. of Forest Mycology and Plant Pathology Anna Berlin, Dept. of Forest Mycology and Plant Pathology Examiner: Anders Dahlberg, Dept. of Forest Mycology and Plant Pathology Credits: 30 hp Level: E Subject: Biology Course title: Independent project in Biology Course code: EX0565 Online publication: http://stud.epsilon.slu.se Key words: rust fungi, aecia, aeciospores, morphology, barberry, DNA sequence analysis, phylogenetic analysis Front-page picture: Barberry bush infected by Puccinia spp., outside Trosa, Sweden. Photo: Anna Berlin 2 3 Content 1 Introduction…………………………………………………………………………. 6 1.1 Life cycle…………………………………………………………………………….. 7 1.2 Hyphae and haustoria………………………………………………………………... 9 1.3 Rust taxonomy……………………………………………………………………….. 10 1.3.1 Formae specialis………………………………………………………………. 10 1.4 Economic importance………………………………………………………………... 10 2 Materials and methods……………………………………………………………... 13 2.1 Rust and barberry -
Species Richness, Taxonomy and Peculiarities of the Neotropical Rust Fungi Are They More Diverse in the Neotropics?
Research Collection Journal Article Species richness, taxonomy and peculiarities of the neotropical rust fungi Are they more diverse in the Neotropics? Author(s): Berndt, Reinhard Publication Date: 2012-08 Permanent Link: https://doi.org/10.3929/ethz-b-000055339 Originally published in: Biodiversity and Conservation 21(9), http://doi.org/10.1007/s10531-011-0220-z Rights / License: In Copyright - Non-Commercial Use Permitted This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library Biodivers Conserv (2012) 21:2299–2322 DOI 10.1007/s10531-011-0220-z ORIGINAL PAPER Species richness, taxonomy and peculiarities of the neotropical rust fungi: are they more diverse in the Neotropics? Reinhard Berndt Received: 27 July 2011 / Accepted: 21 December 2011 / Published online: 22 January 2012 Ó Springer Science+Business Media B.V. 2012 Abstract The species richness of rust fungi (Pucciniales or Uredinales) in the neotropics is reviewed. Species numbers are presented for all neotropical countries and rust-plant- ratios calculated. It is discussed whether the ratio for a given region can be explained by the species richness of vascular plants alone or whether it is caused by additional factors. In the first case, ratios should apply globally and vary only slightly; in the second case, more diverging ratios are expected. Observed ratios ranged between 1:16 and 1:124 in the neotropics. The large differences are certainly influenced by unequal levels of investiga- tion, rendering interpretation difficult. Differences seem also to be influenced by the tax- onomic composition of floras regarding the percentage of host families or genera bearing different numbers of rust species. -
Gljive Iz Reda Pucciniales – Morfologija, Sistematika, Ekologija I Patogenost
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Croatian Digital Thesis Repository SVEUČILIŠTE U ZAGREBU PRIRODOSLOVNO – MATEMATIČKI FAKULTET BIOLOŠKI ODSJEK Gljive iz reda Pucciniales – morfologija, sistematika, ekologija i patogenost Fungi from order Pucciniales – morphology, systematics, ecology and pathogenicity SEMINARSKI RAD Jelena Radman Preddiplomski studij biologije Mentor: Prof. dr. sc. Tihomir Miličević SADRŽAJ 1. UVOD............................................................................................................................................... 2 2. SISTEMATIKA ................................................................................................................................... 3 3. MORFOLOGIJA................................................................................................................................. 5 3.1. GRAĐA FRUKTIFIKACIJSKIH TIJELA I SPORE ............................................................................. 5 3.1.1. Spermatogoniji (piknidiji) sa spermacijama (piknidiosporama) ................................... 5 3.1.2. Ecidiosorusi (ecidiji) s ecidiosporama ............................................................................ 6 3.1.3. Uredosorusi (urediji) s uredosporama ........................................................................... 7 3.1.4. Teliosorusi (teliji) s teliosporama................................................................................... 7 3.1.5. Bazidiji i bazidiospore.................................................................................................... -
Rust (Puccinia Psidii) Recorded in Indonesia Poses a Threat to Forests and Forestry in South-East Asia
Rust (Puccinia psidii) recorded in Indonesia poses a threat to forests and forestry in South-East Asia Alistair R. McTaggart1, Jolanda Roux2, Ginna M. Granados2, Abdul Gafur3, Marthin Tarrigan3, Santhakumar P3, Michael J. Wingfield1 1Department of Microbiology and Plant Pathology, Tree Protection Co-operative Programme (TPCP), Forestry and Agricultural Biotechnology Institute (FABI), Private Bag X20, University of Pretoria, Pretoria, 0028, South Africa 2Department of Plant Sciences, Tree Protection Co-operative Programme (TPCP), Forestry and Agricultural Biotechnology Institute (FABI), Private Bag X20, University of Pretoria, Pretoria, 0028, South Africa 3PT. Riau Andalan Paper and Pulp, Pangkalan Kerinci, Propinsi Riau, Sumatra 28300 corresponding author e-mail: [email protected] Abstract Over the past decade, Puccinia psidii, which causes rust on species of Myrtaceae, has spread rapidly to new areas and is now widespread. Quarantine has done little to prevent its movement through America, the Pacific, Africa, and in this report, South- East Asia. Puccinia psidii is reported for the first time from Indonesia on two genera of Myrtaceae, namely Eucalyptus and Melaleuca. The identity was confirmed by morphology, a molecular barcode comparison to an epitype specimen, and with a molecular phylogenetic approach. Comparison of seven microsatellite markers revealed that the genotype of the rust in Indonesia is the same as that found in Australia. The potential impacts of P. psidii in South-East Asia to the natural environment and plantation forestry are discussed in light of this first report from the region. Keywords: Melaleuca, Myrtaceae, Myrtle rust, Pucciniales, quarantine, Sphaerophragmiaceae, Uredinales Introduction Puccinia psidii (Pucciniales, Pucciniomycotina) causes rust on plants in the Myrtaceae and is a serious threat to Eucalyptus plantations and native ecosystems with myrtaceous species (Glen et al. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
Species Composition and Distribution of Rust Fungi in Zailisky Alatau (Kazakhstan)
BIO Web of Conferences 24, 00069 (2020) https://doi.org/10.1051/bioconf/20202400069 International Conferences “Plant Diversity: Status, Trends, Conservation Concept” 2020 Species composition and distribution of rust fungi in Zailisky Alatau (Kazakhstan) Yelena Rakhimova1*, Gulnaz Sypabekkyzy1, 2, Lyazzat Kyzmetova1, and Assem Assylbek1 1Institute of Botany and Phytointroduction, 050040 Almaty, Kazakhstan 2al-Farabi Kazakh National University, 050040 Almaty, Kazakhstan Abstract. Mycobiota of the Zailisky Alatau includes 176 species of rust fungi, the Microbotryomycetes class has 5 species, the Pucciniomycetes class is represented with 171 species. The largest number of species is characteristic of the genera Puccinia (98 species) and Uromyces (24 species). Others genera are represented with 1–13 species. The greatest number of species of rust fungi is noted for altitudes of 1700-1900 and 1900-2100 m above sea level, what correlates with the vegetation zone of dark coniferous forests and meadows. Great aridity does not allow fungi to develop intensively in the lower foothills and steppe zone, and low temperatures and intense solar insolation inhibit the development of rust fungi in the alpine and subalpine zones. 337 plant species from 165 genera are registered as host plants. The largest number of rust fungi species is noted in the Small and Big Almaty gorges (73 and 57 species, respectively), in the Talgar and Turgen gorges (57 and 63 species, respectively). The gorges of Karakastek, Ush-Konyr, Uzyn-Kargaly, Chemolgan, Small Kemin and Oi-Karagai are characterized by an insignificant diversity of rust fungi (from 3 to 8 species), which is associated with lower humidity of these gorges. -
Tranzschelia Discolor (Fuckel) Tranzschel & Litv., 1939
-- CALIFORNIA D EPAUMENT OF cdfa FOOD & AGRICULTURE ~ California Pest Rating Proposal for Tranzschelia discolor (Fuckel) Tranzschel & Litv., 1939 Synonym Tranzschelia pruni-spinosae var. discolor (Fuckel) Dunegan, 1938 Stone fruit rust Domain: Eukaryota; Kingdom: Fungi; Phylum: Basidiomycota; Subphylum: Pucciniomycotina; Class: Pucciniomycetes; Order: Pucciniales Family: Uropyxidaceae Current Pest Rating: C Proposed Pest Rating: C Comment Period: 12/07/2020 through 01/21/2021 Initiating Event: A request for clarification on the rating for Tranzschelia discolor came from a County plant pathologist. The risk to California from T. discolor is described herein and a permanent rating is proposed. History & Status: Background: Tranzschelia discolor is a rust pathogen, mainly attacking plants in the genus Prunus. Almond, peach, and prune are the most susceptible hosts in California, but it also affects apricot, cherry, nectarine, and plum. It is a macrocyclic, heteroecious rust with multiple spore stages that develop on two different hosts. However, the alternate host is not necessary for epidemics to develop on Prunus. Prunus is the primary host and produces stage II (urediniospores), stage III (teliospores), and stage IV (basidiospores). The alternate host is Anemone coronaria which produces stage 0 (spermatia) and stage 1 (aeciospores). Urediniospores are the repeating, vegetative spores and can autoinfect their Prunus host. The pathogen can be separated into formae speciales (f. sp.), based on host specificity in the uredinial infection stage. Bolkan et al., 1985, showed that the uredinial stages are specific to the -- CALIFORNIA D EPAUMENT OF cdfa FOOD & AGRICULTURE ~ host where they are produced and do not cross-infect. These forms are T. discolor f. sp. -
GENERALIDADES DE LOS UREDINALES (Fungi: Basidiomycota) Y DE SUS RELACIONES FILOGENÉTICAS
Acta biol. Colomb., Vol. 14 No. 1, 2008 41 - 56 GENERALIDADES DE LOS UREDINALES (Fungi: Basidiomycota) Y DE SUS RELACIONES FILOGENÉTICAS Fundamentals Of Rust Fungi (Fungi: Basidiomycota) And Their Phylogentic Relationships CATALINA MARÍA ZULUAGA1, M.Sc.; PABLO BURITICÁ CÉSPEDES2, Ph. D.; MAURICIO MARÍN-MONTOYA3*, Ph. D. 1Laboratorio de Estudios Moleculares, Departamento de Ciencias Agronómicas, Facultad de Ciencias Agropecuarias, Universidad Nacional de Colombia Sede Medellín, Colombia. [email protected] 2Departamento de Ciencias Agronómicas, Facultad de Ciencias Agropecuarias, Universidad Nacional de Colombia Sede Medellín, Colombia. [email protected] 3Laboratorio de Biología Celular y Molecular, Facultad de Ciencias. Universidad Nacional de Colombia, Sede Medellín, Colombia. [email protected] *Correspondencia: Mauricio Marín Montoya, Departamento de Biociencias, Facultad de Ciencias, Universidad Nacional de Colombia Sede Medellín. A.A. 3840. Fax: (4) 4309332. [email protected] Presentado 31 de mayo de 2008, aceptado 15 de agosto de 2008, correcciones 15 de septiembre de 2008. RESUMEN Los hongos-roya (Uredinales, Basidiomycetes) representan uno de los grupos de microor- ganismos fitoparásitos más diversos y con mayor importancia económica mundial en la producción agrícola y forestal. Se caracterizan por ser patógenos obligados y por presentar una estrecha coevolución con sus hospedantes vegetales. Su taxonomía se ha basado fundamentalmente en el estudio de caracteres morfológicos, resultando en muchos casos en la formación de taxones polifiléticos. Sin embargo, en los últimos años se han tratado de incorporar herramientas moleculares que conduzcan a la generación de sistemas de clasificación basados en afinidades evolutivas. En esta revisión se ofrece una mirada general a las características de los uredinales, enfatizando en el surgimiento reciente de estudios filogenéticos que plantean la necesidad de establecer una profunda revisión de la taxonomía de este grupo. -
Phylogenetic Analyses of Eight Isolates of Phakopsora Meibomiae Collected in Puerto Rico1-2 Byron Vega? and Consuelo Estévez De Jensen4 J
Phylogenetic analyses of eight isolates of Phakopsora meibomiae collected in Puerto Rico1-2 Byron Vega? and Consuelo Estévez de Jensen4 J. Agrie. Univ. PR. 95(l-2):45-55 (2011) ABSTRACT American soybean rust (AmSR) caused by Phakopsora meibomiae (Arthur) Arthur is limited to certain areas of the Western Hemisphere. It is not known to cause severe losses to economically important crops. Phakopsora meibomiae naturally infects 42 species of legumes of the subfamily Papilionoidea. During 2008, eight isolates of AmSR infecting Lablab purpureus were collected in the central mountainous area of Puerto Rico. Molecular phylogenetic analyses of the internal transcribed spacer (ITS) region, including 5.8S ribosomal DNA (rDNA), were conducted. The topology of the trees generated by parsimony and by Neighbor-Joining methods was similar. Isolates were identified as Phakopsora meibomiae, with 98 and 100% identity. These isolates formed a monophyletic group. Asian Soybean Rust, Phakopsora pachyrhizi, the most closely related species, formed a second clade. Other rust species of the genera Uromyces, Puccinia, Tranzschelia, Hemileia, Ustilago smut, and the edible mushroom Boletus were included in the analyses as outgroups. Phakopsora species grouped in the Pucciniaceae family formed a sister clade to Phakopsoraceae and Uropyxidaceae families. Key words: American soybean rust, phylogenetic analyses RESUMEN Análisis filogenético de la roya americana de la soya, Phakopsora meibomiae La roya americana de la soya (AmSR), causada por Phakopsora meibomiae (Arthur) Arthur, se encuentra limitada a pocas áreas del Hemisferio Occidental. No se conocen pérdidas severas causadas por este patógeno en cultivos de importancia económica. Phakopsora meibomiae infecta naturalmente 42 especies de leguminosas de la subfamilia Papilionoidea. -
Indian Pucciniales: Taxonomic Outline with Important Descriptive Notes
Mycosphere 12(1): 89–162 (2021) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/12/1/12 Indian Pucciniales: taxonomic outline with important descriptive notes Gautam AK1, Avasthi S2, Verma RK3, Devadatha B4, Jayawardena RS5, Sushma6, Ranadive KR7, Kashyap PL8, Bhadauria R2, Prasher IB9, Sharma VK3, Niranjan M4,10, Jeewon R11 1School of Agriculture, Abhilashi University, Mandi, Himachal Pradesh, 175028, India 2School of Studies in Botany, Jiwaji University, Gwalior, Madhya Pradesh, 474011, India 3Department of Plant Pathology, Punjab Agricultural University, Ludhiana, Punjab, 141004, India 4Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry, 605014, India 5Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 6Department of Botany, Dolphin PG College of Science and Agriculture Chunni Kalan, Fatehgarh Sahib, Punjab, India 7Department of Botany, P.D.E.A.’s Annasaheb Magar Mahavidyalaya, Mahadevnagar, Hadapsar, Pune, Maharashtra, India 8ICAR-Indian Institute of Wheat and Barley Research (IIWBR), Karnal, Haryana, India 9Department of Botany, Mycology and Plant Pathology Laboratory, Panjab University Chandigarh, 160014, India 10 Department of Botany, Rajiv Gandhi University, Rono Hills, Doimukh, Itanagar, Arunachal Pradesh, 791112, India 11Department of Health Sciences, Faculty of Medicine and Health Sciences, University of Mauritius, Reduit, Mauritius Gautam AK, Avasthi S, Verma RK, Devadatha B, Jayawardena RS, Sushma, Ranadive KR, Kashyap PL, Bhadauria R, Prasher IB, Sharma VK, Niranjan M, Jeewon R 2021 – Indian Pucciniales: taxonomic outline with important descriptive notes. Mycosphere 12(1), 89–162, Doi 10.5943/mycosphere/12/1/2 Abstract Rusts constitute a major group of the Kingdom Fungi and they are distributed all over the world on a wide range of wild and cultivated plants.