Presence of Potential Pathogenic Genotypes of Free-Living Amoebae Isolated from Sandboxes in Children’S Playgrounds
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Protistology Mitochondrial Genomes of Amoebozoa
Protistology 13 (4), 179–191 (2019) Protistology Mitochondrial genomes of Amoebozoa Natalya Bondarenko1, Alexey Smirnov1, Elena Nassonova1,2, Anna Glotova1,2 and Anna Maria Fiore-Donno3 1 Department of Invertebrate Zoology, Faculty of Biology, Saint Petersburg State University, 199034 Saint Petersburg, Russia 2 Laboratory of Cytology of Unicellular Organisms, Institute of Cytology RAS, 194064 Saint Petersburg, Russia 3 University of Cologne, Institute of Zoology, Terrestrial Ecology, 50674 Cologne, Germany | Submitted November 28, 2019 | Accepted December 10, 2019 | Summary In this mini-review, we summarize the current knowledge on mitochondrial genomes of Amoebozoa. Amoebozoa is a major, early-diverging lineage of eukaryotes, containing at least 2,400 species. At present, 32 mitochondrial genomes belonging to 18 amoebozoan species are publicly available. A dearth of information is particularly obvious for two major amoebozoan clades, Variosea and Tubulinea, with just one mitochondrial genome sequenced for each. The main focus of this review is to summarize features such as mitochondrial gene content, mitochondrial genome size variation, and presence or absence of RNA editing, showing if they are unique or shared among amoebozoan lineages. In addition, we underline the potential of mitochondrial genomes for multigene phylogenetic reconstruction in Amoebozoa, where the relationships among lineages are not fully resolved yet. With the increasing application of next-generation sequencing techniques and reliable protocols, we advocate mitochondrial -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
The Epidemiology and Clinical Features of Balamuthia Mandrillaris Disease in the United States, 1974 – 2016
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Clin Infect Manuscript Author Dis. Author manuscript; Manuscript Author available in PMC 2020 August 28. Published in final edited form as: Clin Infect Dis. 2019 May 17; 68(11): 1815–1822. doi:10.1093/cid/ciy813. The Epidemiology and Clinical Features of Balamuthia mandrillaris Disease in the United States, 1974 – 2016 Jennifer R. Cope1, Janet Landa1,2, Hannah Nethercut1,3, Sarah A. Collier1, Carol Glaser4, Melanie Moser5, Raghuveer Puttagunta1, Jonathan S. Yoder1, Ibne K. Ali1, Sharon L. Roy6 1Waterborne Disease Prevention Branch, Division of Foodborne, Waterborne, and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA 2James A. Ferguson Emerging Infectious Diseases Fellowship Program, Baltimore, MD, USA 3Oak Ridge Institute for Science and Education, Oak Ridge, TN, USA 4Kaiser Permanente, San Francisco, CA, USA 5Office of Financial Resources, Centers for Disease Control and Prevention Atlanta, GA, USA 6Parasitic Diseases Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, GA, USA Abstract Background—Balamuthia mandrillaris is a free-living ameba that causes rare, nearly always fatal disease in humans and animals worldwide. B. mandrillaris has been isolated from soil, dust, and water. Initial entry of Balamuthia into the body is likely via the skin or lungs. To date, only individual case reports and small case series have been published. Methods—The Centers for Disease Control and Prevention (CDC) maintains a free-living ameba (FLA) registry and laboratory. To be entered into the registry, a Balamuthia case must be laboratory-confirmed. -
Case Definitions for Non-Notifiable Infections Caused by Free-Living Amebae (Naegleria Fowleri, Balamuthia Mandrillaris, and Acanthamoeba Spp.)
11-ID-15 Committee: Infectious Disease Title: Case Definitions for Non-notifiable Infections Caused by Free-living Amebae (Naegleria fowleri, Balamuthia mandrillaris, and Acanthamoeba spp.) I. Statement of the Problem Free-living amebae infections can cause corneal keratitis, blindness or severe, neurologic illnesses that commonly result in death. Although these infections are rare and not currently nationally notifiable, creating standardized case definitions would facilitate more systematic collection of clinical, epidemiologic, and laboratory data to assist in understanding the risk factors for infection with free-living amebae and increase the potential for development of future prevention recommendations. II. Background and Justification Infections caused by free-living amebae (Naegleria fowleri, Balamuthia mandrillaris, and Acanthamoeba [keratitis and non-keratitis infections]) have been well documented worldwide. These amebae can cause fatal or severe skin, eye, and neurologic infections (e.g., N. fowleri causes primary amebic meningoencephalitis [PAM]; B. mandrillaris and several species of Acanthamoeba cause granulomatous amebic encephalitis [GAE]; and Acanthamoeba can also cause keratitis). Annually, during 2005–2008, 3–6 fatal N. fowleri infections occurred underscoring that although these infections are rare, the outcomes are often severe and can undermine the public’s confidence in certain public recreational activities (e.g., swimming in fresh water lakes). A recent case in a Northern tier state (with no history of recent travel) indicates these organisms might be more geographically widespread than previously thought. Clusters of cases associated with organ transplantation occurred in 2009 and 2010, indicating the potential for multiple persons being affected by one source case. Currently, no standardized case definitions exist to facilitate collection of uniform clinical, epidemiologic, and laboratory data, or to serve as a guide for state and local health agencies to use in characterizing such severe illnesses. -
Morphological and Molecular Investigation of Vexillifera Cf. Armata Page, 1979 (Amoebozoa: Dactylopodida) Isolated from the Pacific Ocean
Invertebrate Zoology, 2020, 17(4): 385–402 © INVERTEBRATE ZOOLOGY, 2020 Morphological and molecular investigation of Vexillifera cf. armata Page, 1979 (Amoebozoa: Dactylopodida) isolated from the Pacific Ocean A.A. Kudryavtsev1,2, E.N. Volkova1, F.P. Voytinsky1,3 1 Laboratory of Cellular and Molecular Protistology, Zoological Institute of the Russian Academy of Sciences, Universitetskaya nab. 1, 199034 St. Petersburg, Russia. E-mail: [email protected], [email protected] 2 Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia. 3 Department of Zoology, A.I. Herzen State Pedagogical University of Russia, Nab. Moyki 48, 191186 St. Petersburg, Russia. E-mail: [email protected] ABSTRACT: A strain of Vexillifera Schaeffer, 1926 was isolated from the bottom sediments of the Vostok Bay of the Sea of Japan and showed close similarity to V. armata Page, 1979. The new strain shares several morphological characters of this morphospecies, in particular, cell coat structure and the presence of unique “trichocyst-like bodies” in the cytoplasm. The studied strain branches in one of the clades of marine Vexillifera species, with the unnamed Mediterranean Vexillifera strain K9 as its closest relative. Unfortunately, the type strain of V. armata was lost before any molecular data were obtained. Therefore, no information is available on this species for molecular comparison. The studied strain was isolated from the habitat geographically very distant from the type one. The type strain of V. armata was estuarine, while the new strain was isolated from the lower sublittoral benthos and appears to be stenohaline based on the results of an experimental study. -
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Acta Protozool. (2012) 51: 305–318 http://www.eko.uj.edu.pl/ap ACTA doi:10.4467/16890027AP.12.024.0784 PROTOZOOLOGICA Morphological Description of Telaepolella tubasferens n. g. n. sp., Isolate ATCC© 50593™, a Filose Amoeba in the Gracilipodida, Amoebozoa Daniel J. G. LAHR1,2*, Gabriela M. KUBIK1*, Anastasia L. GANT1, Jessica GRANT1, O. Roger ANDERSON3 and Laura A. KATZ1,2 1Department of Biological Sciences, Smith College, Northampton, MA, USA; 2Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, MA, USA; 3Biology, Lamont-Doherty Earth Observatory of Columbia University, Palisades, New York; * D. J. G. Lahr and G. M. Kubik contributed equally to this work Abstract. We describe the amoeboid isolate ATCC© 50593™ as a new taxon, Telaepolella tubasferens n. g. n. sp. This multinucleated amoeba has filose pseudopods and is superficially similar to members of the vampyrellids (Rhizaria) such as Arachnula impatiens Cien- kowski, 1876, which was the original identification upon deposition. However, previous multigene analyses place this taxon within the Gracilipodida Lahr and Katz 2011 in the Amoebozoa. Here, we document the morphology of this organism at multiple life history stages and provide data underlying the description as a new taxon. We demonstrate that T. tubasferens is distinct from Arachnula and other rhizari- ans (Theratromyxa, Leptophrys) in a suite of morphological characters such as general body shape, relative size of pseudopods, distinction of ecto- and endoplasmic regions, and visibility of nuclei in non-stained cells (an important diagnostic character). Although Amoebozoa taxa generally have lobose pseudopods, genera in Gracilipodida such as Flamella and Filamoeba as well as several organisms previously classified as protosteloid amoebae (e.g. -
Entamoeba Histolytica Uninucleate Cyst Cyst
Genus: Entamoeba Species: E. histolytica E. dispar E. hartmanni E. coli E. gingivalis E. Polecki E. moshkovskii Genus: Endolimax Species: E. nana Genus: Iodamoeba Species: I. bütschlii (Peripheral Chromatin) (linin network) (Pseudopodia) Binary fission E. coli 15-50 µ 10-35 µ E. coli E. histolytica T:12-60 µ C:10-15 µ Minuta :12- 15 µ Trophozoites Cysts E. histolytica E. histolytica Hematophage Magnata E. dispar E. histolytica /E. dispar E. moshkovskii E. histolytica /E. dispar/E. moshkovskii E. hartmanni T:10-12 µ C:7-10 µ E. gingivalis T: 10 - 35 µ E. Polecki T:25-30 µ C:10-15 µ Endolimax nana T:5-15 µ T:6-8 µ C:6-8 µ Iodamoeba bütschlii T:12-16 µ C:9-10 µ Genus: Entamoeba Species: E. histolytica Amebiasis E. dispar E. hartmanni E. Polecki E. coli E. moshkovskii - – ( Anal sex ) ( Fecal-oral self-inoculation ) .I .II .I .II E. dispar E. moshkovskii (Immunodiagnosis) 1. Antibody Detection IHA , IFA , ELISA 2. Antigen Detection ELISA )Molecular diagnosis ( E. HISTOLYTICA II TECHLAB® A 2nd generation Monoclonal ELISA for detecting E. histolytica adhesin in fecal specimens Catalog No. T5017 (96 Tests) E. dispar E. moshkovskii (Immunodiagnosis) 1. Antibody Detection IHA , IFA , ELISA 2. Antigen Detection ELISA )Molecular diagnosis ( PCR Phase Contrast Microscopy X 400 Entamoeba coli Entamoeba histolytica uninucleate cyst cyst Phase Contrast Microscopy X 400 Entamoeba histolytica Macrophage trophozoite Phase Contrast Microscopy X 400 Entamoeba histolytica Epithelial cells trophozoites Phase Contrast Microscopy X 400 Entamoeba histolytica Entamoeba coli trophozoite Phase Contrast Microscopy X 400 Entamoeba histolytica Polymorphonuclear cyst leucocytes Trichrome Stain x 1000 Entamoeba histolytica Macrophage cyst PH PH ! ! ! ! ! ! Naegleria Acanthamoeba Balamuthia Naegleria fowleri Primary Amebic Meingoencephalitis (PAM) ( lobopodia ) 10-35 µm Amebostome (9 µm )8-12 µ Thermophilic Naegleria fowleri trophozoite Naegleria fowleri trophozoite in spinal fluid. -
A Review of Balamuthiasis
Int. J. Adv. Res. Biol. Sci. (2020). 7(8): 15-24 International Journal of Advanced Research in Biological Sciences ISSN: 2348-8069 www.ijarbs.com DOI: 10.22192/ijarbs Coden: IJARQG (USA) Volume 7, Issue 8 -2020 Review Article DOI: http://dx.doi.org/10.22192/ijarbs.2020.07.08.003 A Review of Balamuthiasis Pam Martin Zang Department of Animal Health, Federal College of Animal health and Production Technology (NVRI)Vom, Plateau state Nigeria Abstract Balamuthia mandrillaris was first discovered in 1986 from brain necropsy of a pregnant mandrill baboon (Papio sphinx) that died of a neurological disease at the San Diego Zoo Wild Animal Park, California, USA. Because of the rarity of Balamuthiasis, risk factors for the disease are not well defined. Though soil, stagnant water may serve as sources of infection for balamuthiasis. Right now, the predisposing factors for B. mandrillaris encephalitis remain incompletely understood. Though, BAE may occur in healthy individuals, immunocompromised or weakened patients due to HIV infection, malnutrition, diabetes, those on immunosuppressive therapy, patients with malignancies, and alcoholism are predominantly at risk. While the number of infections due to B. mandrillaris is fairly low, the difficulty in diagnosis, lack of awareness, problematic treatment of GAE or BAE, and the resulting fatal consequences highlights that this infection is of great concern, not just for humans but also for animals Current methods of treatment require increased awareness of physicians and pathologists of GAE or BAE and strong suspicion based on clinical findings. Early diagnosis followed by aggressive treatment using a mixture of drugs is crucial, and even then the prognosis remains extremely poor. -
Granulomatous Meningoencephalitis Balamuthia Mandrillaris in Peru: Infection of the Skin and Central Nervous System
SMGr up Granulomatous Meningoencephalitis Balamuthia mandrillaris in Peru: Infection of the Skin and Central Nervous System A. Martín Cabello-Vílchez MSc, PhD* Universidad Peruana Cayetano Heredia, Instituto de Medicina Tropical “Alexander von Humboldt” *Corresponding author: Instituto de Medicina Tropical “Alexander von Humboldt”, Av. Honorio Delgado Nº430, San A. Martín Cabello-Vílchez, Universidad Peruana Cayetano Heredia, MartínPublished de Porras, Date: Lima-Perú, Tel: +511 989767619, Email: [email protected] February 16, 2017 ABSTRACT Balamuthia mandrillaris is an emerging cause of sub acute granulomatous amebic encephalitis (GAE) or Balamuthia mandrillaris amoebic infection (BMAI). It is an emerging pathogen causing skin lesions as well as CNS involvement with a fatal outcome if untreated. The infection has been described more commonly in inmunocompetent individuals, mostly males, many children. All continents have reported the disease, although a majority of cases are seen in North and South America, especially Peru. Balamuthia mandrillaris is a free living amoeba that can be isolated from soil. In published reported cases from North America, most patients will debut with neurological symptoms, where as in countries like Peru, a skin lesion will precede neurological symptoms. The classical cutaneous lesionis a plaque, mostly located on face, knee or other body parts. Diagnosis requires a specialized laboratory and clinical experience. This Amoebic encephalitis may be erroneously interpreted as a cerebral neoplasm, causing delay in the management of the infection. Thediagnosis of this infection has proven to be difficult and is usually made post-mortem but in Peru many cases were pre-morten. Despite case fatality rates as high as > 98%, some experimental therapies have shown protozoal therapy with macrolides and phenothiazines. -
Neoparamoeba Sp. and Other Protozoans on the Gills of Atlantic Salmon Salmo Salar Smolts in Seawater
DISEASES OF AQUATIC ORGANISMS Vol. 76: 231–240, 2007 Published July 16 Dis Aquat Org Neoparamoeba sp. and other protozoans on the gills of Atlantic salmon Salmo salar smolts in seawater Mairéad L. Bermingham*, Máire F. Mulcahy Environmental Research Institute, Aquaculture and Fisheries Development Centre, Department of Zoology, Ecology and Plant Science, National University of Ireland, Cork, Ireland ABSTRACT: Protozoan isolates from the gills of marine-reared Atlantic salmon Salmo salar smolts were cultured, cloned and 8 dominant isolates were studied in detail. The light and electron-micro- scopical characters of these isolates were examined, and 7 were identified to the generic level. Struc- ture, ultrastructure, a species-specific immunofluorescent antibody test (IFAT), and PCR verified the identity of the Neoparamoeba sp. isolate. Five other genera of amoebae, comprising Platyamoeba, Mayorella, Vexillifera, Flabellula, and Nolandella, a scuticociliate of the genus Paranophrys, and a trypanosomatid (tranosomatid-bodonid incertae sedis) accompanied Neoparamoeba sp. in the gills. The pathogenic potential of the isolated organisms, occurring in conjunction with Neoparamoeba sp. in the gills of cultured Atlantic salmon smolts in Ireland, remains to be investigated KEY WORDS: Amoebic gill disease · Neoparamoeba sp. · Amoebae · Platyamoeba sp. · Scuticociliates · Trypanosomatids Resale or republication not permitted without written consent of the publisher INTRODUCTION 1990, Palmer et al. 1997). However, simultaneous iso- lation of amoebae other than Neoparamoeba sp. from Various protozoans have been associated with gill the gills of clinically diseased fish has raised the disease in fish. Those causing the most serious mor- question of the possible involvement of such amoe- talities in fish are generally free-living species of bae in the disease (Dyková et al.