The Rat Pancreatic Microsome Enzyme Release Phenomenon
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The Secretory Proprotein Convertase Neural Apoptosis-Regulated Convertase 1 (NARC-1): Liver Regeneration and Neuronal Differentiation
The secretory proprotein convertase neural apoptosis-regulated convertase 1 (NARC-1): Liver regeneration and neuronal differentiation Nabil G. Seidah*†, Suzanne Benjannet*, Louise Wickham*, Jadwiga Marcinkiewicz*, Ste´phanie Be´langer Jasmin‡, Stefano Stifani‡, Ajoy Basak§, Annik Prat*, and Michel Chre´ tien§ *Laboratory of Biochemical Neuroendocrinology, Clinical Research Institute of Montreal, 110 Pine Avenue West, Montreal, QC, H2W 1R7 Canada; ‡Montreal Neurological Institute, McGill University, Montreal, QC, H3A 2B4 Canada; and §Regional Protein Chemistry Center and Diseases of Aging Unit, Ottawa Health Research Institute, Ottawa Hospital, Civic Campus, 725 Parkdale Avenue, Ottawa, ON, K1Y 4E9 Canada Edited by Donald F. Steiner, University of Chicago, Chicago, IL, and approved December 5, 2002 (received for review September 10, 2002) Seven secretory mammalian kexin-like subtilases have been iden- LP251 (Eli Lilly, patent no. WO 02͞14358 A2) recently cloned tified that cleave a variety of precursor proteins at monobasic and by two pharmaceutical companies. NARC-1 was identified via dibasic residues. The recently characterized pyrolysin-like subtilase the cloning of cDNAs up-regulated after apoptosis induced by SKI-1 cleaves proproteins at nonbasic residues. In this work we serum deprivation in primary cerebellar neurons, whereas LP251 describe the properties of a proteinase K-like subtilase, neural was discovered via global cloning of secretory proteins. Aside apoptosis-regulated convertase 1 (NARC-1), representing the ninth from the fact that NARC-1 mRNA is expressed in liver ϾϾ member of the secretory subtilase family. Biosynthetic and micro- testis Ͼ kidney and that the gene localizes to human chromo- sequencing analyses of WT and mutant enzyme revealed that some 1p33-p34.3, no information is available on NARC-1 ac- human and mouse pro-NARC-1 are autocatalytically and intramo- tivity, cleavage specificity, cellular and tissue expression, and lecularly processed into NARC-1 at the (Y,I)VV(V,L)(L,M)2 motif, a biological function. -
Chymotrypsin-Like Peptidases in Insects
Chymotrypsin-like peptidases in insects Dissertation zur Erlangung des akademischen Grades Doctor rerum naturalium (Dr. rer. nat.) Fachbereich Biologie/Chemie der Universität Osnabrück vorgelegt von Gunnar Bröhan Osnabrück, Mai 2010 TABLE OF CONTENTS I Table of contents 1. Introduction 1 1.1. Serine endopeptidases 1 1.2. The structure of S1A chymotrypsin-like peptidases 2 1.3. Catalytic mechanism of chymotrypsin-like peptidases 6 1.4. Insect chymotrypsin-like peptidases 9 1.4.1. Chymotrypsin-like peptidases in insect immunity 9 1.4.2. Role of chymotrypsin-like peptidases in digestion 14 1.4.3. Involvement of chymotrypsin-like peptidases in molt 16 1.5. Objective of the work 18 2. Material and Methods 20 2.1. Material 20 2.1.1. Culture Media 20 2.1.2. Insects 20 2.2. Molecular biological methods 20 2.2.1. Tissue preparations for total RNA isolation 20 2.2.2. Total RNA isolation 21 2.2.3. Reverse transcription 21 2.2.4. Quantification of nucleic acids 21 2.2.5. Chemical competent Escherichia coli 21 2.2.6. Ligation and transformation in E. coli 21 2.2.7. Preparation of plasmid DNA 22 2.2.8. Restriction enzyme digestion of DNA 22 2.2.9. DNA gel-electrophoresis and DNA isolation 22 2.2.10. Polymerase-chain-reaction based methods 23 2.2.10.1. RACE-PCR 23 2.2.10.2. Quantitative Realtime PCR 23 2.2.10.3. Megaprimer PCR 24 2.2.11. Cloning of insect CTLPs 25 2.2.12. Syntheses of Digoxigenin-labeled DNA and RNA probes 26 2.2.13. -
Microsomal and Cytosolic Scaling Factors in Dog and Human Kidney Cortex and Application for in Vitro-In Vivo Extrapolation of Renal Metabolic Clearance S
Supplemental material to this article can be found at: http://dmd.aspetjournals.org/content/suppl/2017/03/07/dmd.117.075242.DC1 1521-009X/45/5/556–568$25.00 https://doi.org/10.1124/dmd.117.075242 DRUG METABOLISM AND DISPOSITION Drug Metab Dispos 45:556–568, May 2017 Copyright ª 2017 by The Author(s) This is an open access article distributed under the CC BY Attribution 4.0 International license. Microsomal and Cytosolic Scaling Factors in Dog and Human Kidney Cortex and Application for In Vitro-In Vivo Extrapolation of Renal Metabolic Clearance s Daniel Scotcher, Sarah Billington, Jay Brown, Christopher R. Jones, Colin D. A. Brown, Amin Rostami-Hodjegan, and Aleksandra Galetin Centre for Applied Pharmacokinetic Research, University of Manchester, Manchester (D.S., A.R.-H., A.G.); Newcastle University, Newcastle (S.B., C.D.A.B.); Biobank, Central Manchester University Hospitals NHS Foundation Trust, Manchester (J.B.); DMPK, Oncology iMed, AstraZeneca R&D, Alderley Park, Macclesfield (C.R.J.); and Simcyp Limited (a Certara Company), Blades Enterprise Centre, Sheffield (A.R.-H.), United Kingdom Received January 26, 2017; accepted February 27, 2017 Downloaded from ABSTRACT In vitro-in vivo extrapolation of drug metabolism data obtained in in dog liver (n = 17), using P450 content and G6Pase activity, enriched preparations of subcellular fractions rely on robust esti- respectively. No trends were noted between kidney, liver, and mates of physiologically relevant scaling factors for the prediction of intestinal scalars from the same animals. Species differences were clearance in vivo. The purpose of the current study was to measure evident, as human MPPGK and CPPGK were 26.2 and 53.3 mg/g in the microsomal and cytosolic protein per gram of kidney (MPPGK kidney cortex (n = 38), respectively. -
Microsome Isolation Kit 3/15 (Catalog # K249-50; 50 Isolations; Store at -20°C) I
FOR RESEARCH USE ONLY! Microsome Isolation Kit 3/15 (Catalog # K249-50; 50 isolations; Store at -20°C) I. Introduction: Microsomes are spherical vesicle-like structures formed from membrane fragments following homogenization and fractionation of eukaryotic cells. The microsomal subcellular fraction is prepared by differential centrifugation and consists primarily of membranes derived from the endoplasmic reticulum (ER) and Golgi apparatus. Microsomes isolated from liver tissue are used extensively in pharmaceutical development, toxicology and environmental science to study the metabolism of drugs, organic pollutants and other xenobiotic compounds by the cytochrome P450 monooxidase (CYP) enzyme superfamily. Microsomal preparations are an affordable and convenient in vitro system for assessing Phase I biotransformation reactions, as they contain all of the xenobiotic-metabolizing CYP isozymes and the membrane-bound flavoenzymes (such as NADPH P450-Reductase and cytochrome b5) required for function of the multicomponent P450 enzyme system. BioVision’s Microsome Isolation Kit enables preparation of active microsomes in about one hour, without the need for ultracentrifugation or sucrose gradient fractionation. The kit contains sufficient reagents for 50 isolation procedures, yielding microsomes from roughly 25 grams of tissue or cultured cells. II. Applications: Convenient and fast isolation of microsomal fraction from animal tissues Assessment of CYP-mediated drug metabolism and xenobiotic biotransformation Protein profiling of microsomal membrane proteins by SDS-PAGE and Western blot III. Sample Type: Mammalian glands and soft tissues such as liver, spleen, lungs etc. Cultured eukaryotic cell lines such as HepG2 human hepatic carcinoma cells IV. Kit Contents: Components K249-50 Cap Code Part Number Homogenization Buffer 80 ml NM K249-50-1 Storage Buffer 20 ml WM K249-50-2 Protease Inhibitor Cocktail 1 vial Red K249-50-3 V. -
Structure of the Human Signal Peptidase Complex Reveals the Determinants for Signal Peptide Cleavage
bioRxiv preprint doi: https://doi.org/10.1101/2020.11.11.378711; this version posted November 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Structure of the Human Signal Peptidase Complex Reveals the Determinants for Signal Peptide Cleavage A. Manuel Liaci1, Barbara Steigenberger2,3, Sem Tamara2,3, Paulo Cesar Telles de Souza4, Mariska Gröllers-Mulderij1, Patrick Ogrissek1,5, Siewert J. Marrink4, Richard A. Scheltema2,3, Friedrich Förster1* Abstract The signal peptidase complex (SPC) is an essential membrane complex in the endoplasmic reticulum (ER), where it removes signal peptides (SPs) from a large variety of secretory pre-proteins with exquisite specificity. Although the determinants of this process have been established empirically, the molecular details of SP recognition and removal remain elusive. Here, we show that the human SPC exists in two functional paralogs with distinct proteolytic subunits. We determined the atomic structures of both paralogs using electron cryo- microscopy and structural proteomics. The active site is formed by a catalytic triad and abuts the ER membrane, where a transmembrane window collectively formed by all subunits locally thins the bilayer. This unique architecture generates specificity for thousands of SPs based on the length of their hydrophobic segments. Keywords Signal Peptidase Complex, Signal Peptide, Protein Maturation, Membrane Thinning, cryo-EM, Crosslinking Mass Spectrometry, Molecular Dynamics Simulations, Protein Secretion, ER Translocon 1Cryo-Electron Microscopy, Bijvoet Centre for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. -
The Extraction of Intracisternal A-Particles from a Mouse Plasma-Cell Tumor1
(CANCER RESEARCH 28, 2137-2148,October1968] The Extraction of Intracisternal A-Particles from a Mouse Plasma-Cell Tumor1 Edward 1.Kuff, Nelson A. Wivel, and Kira K. Lueders Laboratory of Biochemistry and Viral Leukemia and Lymphoma Branch, National Cancer lnstitute, NIH, Department of Health, Education, and Welfare, USPHS, Bethesda, Maryland ?A%114 SUMMARY 29, A. J. Dalton, M. Potter, and H. B. Andervont, personal communication). Plasma-cell tumors in BALB/c mice contain numerous in The other type, with which the present study deals, has been tracistemnal A-particles which remain localized within micro found in myeloma lines arising both in C3H mice (carrying somal vesicles when the tumor cells are disrupted by homoge the mammary tumor agent) and in mice of the agent-free nization. Liberation of the particles has been achieved by sub BALB/c strain. Measuring between 70 and 100 m@iin diameter, jecting microsome suspensions to mechanical shear in the pres these particles consist of two concentric shells surrounding a ence of an optimal concentration of Triton X-100. The particles relatively electron-lucent core and are characterized by an cx were concentrated by two cycles of sedimentation in sucrose clusive localization within the cistemnae of the endoplasmic potassium citrate solutions, pH 72, and finally banded iso reticulum of the tumor cells. They appear to form by budding pycnically in a sucrose density gradient containing dilute at the reticulum membranes and may be very numerous in th,@ potassium citrate. Most of the particles were recovered in a neoplastic plasma cells. Particles of similar morphology and density range of 1.20.-i .24 gm/cu cm. -
Trypsinogen Isoforms in the Ferret Pancreas Eszter Hegyi & Miklós Sahin-Tóth
www.nature.com/scientificreports OPEN Trypsinogen isoforms in the ferret pancreas Eszter Hegyi & Miklós Sahin-Tóth The domestic ferret (Mustela putorius furo) recently emerged as a novel model for human pancreatic Received: 29 June 2018 diseases. To investigate whether the ferret would be appropriate to study hereditary pancreatitis Accepted: 25 September 2018 associated with increased trypsinogen autoactivation, we purifed and cloned the trypsinogen isoforms Published: xx xx xxxx from the ferret pancreas and studied their functional properties. We found two highly expressed isoforms, anionic and cationic trypsinogen. When compared to human cationic trypsinogen (PRSS1), ferret anionic trypsinogen autoactivated only in the presence of high calcium concentrations but not in millimolar calcium, which prevails in the secretory pathway. Ferret cationic trypsinogen was completely defective in autoactivation under all conditions tested. However, both isoforms were readily activated by enteropeptidase and cathepsin B. We conclude that ferret trypsinogens do not autoactivate as their human paralogs and cannot be used to model the efects of trypsinogen mutations associated with human hereditary pancreatitis. Intra-pancreatic trypsinogen activation by cathepsin B can occur in ferrets, which might trigger pancreatitis even in the absence of trypsinogen autoactivation. Te digestive protease precursor trypsinogen is synthesized and secreted by the pancreas to the duodenum where it becomes activated to trypsin1. Te activation process involves limited proteolysis of the trypsinogen activation peptide by enteropeptidase, a brush-border serine protease specialized for this sole purpose. Te activation peptide is typically an eight amino-acid long N-terminal sequence, which contains a characteristic tetra-aspartate motif preceding the activation site peptide bond, which corresponds to Lys23-Ile24 in human trypsinogens. -
Role of the Amino Terminus in Intracellular Protein Targeting to Secretory Granules Teresa L
In Vitro Mutagenesis of Trypsinogen: Role of the Amino Terminus in Intracellular Protein Targeting to Secretory Granules Teresa L. Burgess,* Charles S. Craik,** Linda Matsuuchi,* and Regis B. Kelly* * Department of Biochemistry and Biophysics, and *Department of Pharmaceutical Chemistry, University of California, San Francisco, California 94143 Abstract. The mouse anterior pituitary tumor cell expressed in AtT-20 cells to determine whether intra- line, AtT-20, targets secretory proteins into two distinct cellular targeting could be altered. Replacing the tryp- intracellular pathways. When the DNA that encodes sinogen signal peptide with that of the kappa-immu- trypsinogen is introduced into AtT-20 cells, the protein noglobulin light chain, a constitutively secreted is sorted into the regulated secretory pathway as protein, does not alter targeting to the regulated secre- efficiently as the endogenous peptide hormone ACq'H. tory pathway. In addition, deletion of the NH2-terminal In this study we have used double-label immunoelec- "pro" sequence of trypsinogen has virtually no effect tron microscopy to demonstrate that trypsinogen on protein targeting. However, this deletion does affect colocalizes in the same secretory granules as ACTH. the signal peptidase cleavage site, and as a result the In vitro mutagenesis was used to test whether the in- enzymatic activity of the truncated trypsin protein is formation for targeting trypsinogen m the secretory abolished. We conclude that neither the signal peptide granules resides at the amino (NH2) terminus of the nor the 12 NH2-terminal amino acids of trypsinogen protein. Mutations were made in the DNA that en- are essential for sorting to the regulated secretory codes trypsinogen, and the mutant proteins were pathway of AtT-20 cells. -
Association of Newly Synthesized Islet Prohormones with Intracellular Membranes
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Association of Newly Synthesized Islet Prohormones with Intracellular Membranes BRYAN D. NOE and MICHAEL N. MORAN Department ofAnatomy, Emory University of School of Medicine, Atlanta, Georgia 30322; The Marine Biological Laboratory, Woods Hole, Massachusetts 02543 ABSTRACT Results from recent studies have indicated that pancreatic islet prohormone converting enzymes are membrane-associated in islet microsomes and secretory granules. This observation, along with the demonstration that proglucagon is topologically segregated to the periphery within alpha cell secretory granules in several species, led us to investigate the possibility that newly synthesized islet prohormones might be associated with intracellular membranes. Anglerfish islets were incubated with [3 H]tryptophan and [ 14C]isoleucine for 3 h, then fractionated by differential and density gradient centrifugation. Microsome (M) and secretory granule (SG) fractions were halved, sedimented, and resuspended in the presence or absence of dissociative reagents. After membrane lysis by repeated freezing and thawing, the membranous and soluble components were separated by centrifugation . Extracts of supernatants and pellets were chromatographed by gel filtration ; fractions were collected and counted . A high proportion (77-79%) of the newly synthesized proinsulin and insulin was associated with both M and SG membranes. Most of the newly synthesized proglucagons and prosomatostatins (12,000-mol-wt precursors) were also membrane-associated (86-88%) in M and SG . In contrast, glucagon- and somatostatin-related peptides exhibited much less mem- brane-association in SG (24-31%) . Bacitracin, bovine serum albumin EDTA, RNAse, a-meth- ylmannoside, N-acetylglucosamine, and dithiodipyridine had no effect on prohormone asso- ciation with membranes. -
Method for Linking Nucleic Acids in a Microsome from Endoplasmatic
(19) TZZ ¥¥_T (11) EP 2 626 433 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C12Q 1/68 (2006.01) C12N 15/62 (2006.01) 12.04.2017 Bulletin 2017/15 C12N 15/13 (2006.01) C07K 16/00 (2006.01) (21) Application number: 12154726.9 (22) Date of filing: 09.02.2012 (54) Method for linking nucleic acids in a microsome from endoplasmatic reticuli Verfahren zum Koppeln von Nukleinsäuren in einem Mikrosom aus den endoplasmatischen Retikuli. Procédé pour lier les acides nucléiques dans un microsome provenant du réticulum endoplasmique (84) Designated Contracting States: • ANGENENDT P ET AL: "CELL-FREE PROTEIN AL AT BE BG CH CY CZ DE DK EE ES FI FR GB EXPRESSION AND FUNCTIONAL ASSAY IN GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO NANOWELL CHIP FORMAT", ANALYTICAL PL PT RO RS SE SI SK SM TR CHEMISTRY, AMERICAN CHEMICAL SOCIETY, US, vol. 76, no. 7, 1 April 2004 (2004-04-01), pages (43) Date of publication of application: 1844-1849, XP001196723, ISSN: 0003-2700, DOI: 14.08.2013 Bulletin 2013/33 10.1021/AC035114I • DATABASE MEDLINE [Online] US NATIONAL (73) Proprietors: LIBRARY OF MEDICINE (NLM), BETHESDA, MD, • Max-Planck-Gesellschaft zur Förderung US; December 2001 (2001-12), WANG M ET AL: der Wissenschaften e.V. "[Sequence analysis of the late region of human 80539 München (DE) papillomavirus type 6 genome].", XP002678283, • Alacris Theranostics GmbH Database accession no. NLM12901100 & 14195 Berlin (DE) ZHONGGUO YI XUE KE XUE YUAN XUE BAO. -
Subproteomic Analysis of Soluble Proteins of the Microsomal Fraction from Two Leishmania Species
Comparative Biochemistry and Physiology, Part D 1 (2006) 300–308 www.elsevier.com/locate/cbpd Subproteomic analysis of soluble proteins of the microsomal fraction from two Leishmania species Arthur H.C. de Oliveira a, Jerônimo C. Ruiz b, Angela K. Cruz b, ⁎ Lewis J. Greene b,c, José César Rosa b,c, Richard J. Ward a, a Departamento de Química, FFCLRP-USP, Universidade de São Paulo, Ribeirão Preto-SP, Brazil b Departamento de Biologia Celular e Molecular e Celular e Bioagentes Patogênicos, FMRP-USP, Ribeirão Preto-SP, Brazil c Centro de Química de Proteínas, FMRP-USP, Ribeirão Preto-SP, Brazil Received 17 November 2005; received in revised form 26 May 2006; accepted 27 May 2006 Available online 3 June 2006 Abstract Parasites of the genus Leishmania are the causative agents of a range of clinical manifestations collectively known as Leishmaniasis, a disease that affects 12 million people worldwide. With the aim of identifying potential secreted protein targets for further characterization, we have applied two-dimensional gel electrophoresis and mass spectrometry methods to study the soluble protein content of the microsomal fraction from two Leishmania species, Leishmania L. major and L. L. amazonensis. MALDI-TOF peptide mass fingerprint analysis of 33 protein spots from L. L. amazonensis and 41 protein spots from L. L. major identified 14 proteins from each sample could be unambiguously assigned. These proteins include the nucleotide diphosphate kinase (NDKb), a calpain-like protease, a tryparedoxin peroxidase (TXNPx) and a small GTP-binding Rab1-protein, all of which have a potential functional involvement with secretion pathways and/or environmental responses of the parasite. -
Chem331 Tansey Chpt4
3/10/20 Adhesion Covalent Cats - Proteases Roles Secretion P. gingivalis protease signal peptidases Immune Development Response T-cell protease matriptase 4 classes of proteases: Serine, Thiol (Cys), Acid Blood pressure Digestion regulation (Aspartyl), & Metal (Zn) trypsin renin Function Protease ex. Serine Cysteine trypsin, subtilisin, a-lytic Complement protease protease Nutrition Cell fusion protease Fixation hemaglutinase Invasion matrixmetalloproteases CI protease Evasion IgA protease Reproduction Tumor ADAM (a disintegrain and Invasion Adhesion collagenase and metalloproteinase) Fertilization signal peptidase, viral Processing acronase proteases, proteasome Signaling caspases, granzymes Fibrinolysis Pain Sensing tissue plasminogen kallikrein Acid Metallo- actvator protease protease Animal Virus Hormone Replication Processing HIV protease Kex 2 Substrate Specificity Serine Proteases Binding pocket is responsible for affinity Ser, His and Asp in active site Ser Proteases Multiple Mechanism Chymotrypsin Mechanism •Serine not generally an active amino acid for acid/base catalysis Nucleophilic attack •Catalytic triad of serine, histadine and aspartate responsible for the reactivity of serine in this active site •Covalent catalysis, Acid/base Catalysis, transition state bindingand Proximity mechanisms are used •Two phase reaction when an ester is used – burst phase - E +S initial reactions – steady state phase - EP -> E + P (deacylation) – The first step is the covalent catalysis - where the substrate actually is bound to the enzyme itself