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The Gut Microbiota and Inflammation
International Journal of Environmental Research and Public Health Review The Gut Microbiota and Inflammation: An Overview 1, 2 1, 1, , Zahraa Al Bander *, Marloes Dekker Nitert , Aya Mousa y and Negar Naderpoor * y 1 Monash Centre for Health Research and Implementation, School of Public Health and Preventive Medicine, Monash University, Melbourne 3168, Australia; [email protected] 2 School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane 4072, Australia; [email protected] * Correspondence: [email protected] (Z.A.B.); [email protected] (N.N.); Tel.: +61-38-572-2896 (N.N.) These authors contributed equally to this work. y Received: 10 September 2020; Accepted: 15 October 2020; Published: 19 October 2020 Abstract: The gut microbiota encompasses a diverse community of bacteria that carry out various functions influencing the overall health of the host. These comprise nutrient metabolism, immune system regulation and natural defence against infection. The presence of certain bacteria is associated with inflammatory molecules that may bring about inflammation in various body tissues. Inflammation underlies many chronic multisystem conditions including obesity, atherosclerosis, type 2 diabetes mellitus and inflammatory bowel disease. Inflammation may be triggered by structural components of the bacteria which can result in a cascade of inflammatory pathways involving interleukins and other cytokines. Similarly, by-products of metabolic processes in bacteria, including some short-chain fatty acids, can play a role in inhibiting inflammatory processes. In this review, we aimed to provide an overview of the relationship between the gut microbiota and inflammatory molecules and to highlight relevant knowledge gaps in this field. -
Pathological and Therapeutic Approach to Endotoxin-Secreting Bacteria Involved in Periodontal Disease
toxins Review Pathological and Therapeutic Approach to Endotoxin-Secreting Bacteria Involved in Periodontal Disease Rosalia Marcano 1, M. Ángeles Rojo 2 , Damián Cordoba-Diaz 3 and Manuel Garrosa 1,* 1 Department of Cell Biology, Histology and Pharmacology, Faculty of Medicine and INCYL, University of Valladolid, 47005 Valladolid, Spain; [email protected] 2 Area of Experimental Sciences, Miguel de Cervantes European University, 47012 Valladolid, Spain; [email protected] 3 Area of Pharmaceutics and Food Technology, Faculty of Pharmacy, and IUFI, Complutense University of Madrid, 28040 Madrid, Spain; [email protected] * Correspondence: [email protected] Abstract: It is widely recognized that periodontal disease is an inflammatory entity of infectious origin, in which the immune activation of the host leads to the destruction of the supporting tissues of the tooth. Periodontal pathogenic bacteria like Porphyromonas gingivalis, that belongs to the complex net of oral microflora, exhibits a toxicogenic potential by releasing endotoxins, which are the lipopolysaccharide component (LPS) available in the outer cell wall of Gram-negative bacteria. Endotoxins are released into the tissues causing damage after the cell is lysed. There are three well-defined regions in the LPS: one of them, the lipid A, has a lipidic nature, and the other two, the Core and the O-antigen, have a glycosidic nature, all of them with independent and synergistic functions. Lipid A is the “bioactive center” of LPS, responsible for its toxicity, and shows great variability along bacteria. In general, endotoxins have specific receptors at the cells, causing a wide immunoinflammatory response by inducing the release of pro-inflammatory cytokines and the production of matrix metalloproteinases. -
The Role of Porphyromonas Gingivalis Virulence Factors in Periodontitis Immunopathogenesis
The Role of Porphyromonas gingivalis Virulence Factors in Periodontitis Immunopathogenesis (Peran Faktor Virulensi Porphyromonas Gingivalis pada Imunopatogenesis Periodontitis) Tienneke Riana Septiwidyati, Endang Winiati Bachtiar Department of Oral Biology, Faculty of Dentistry, Universitas Indonesia, Jakarta, Indonesia, Email: [email protected] Abstract Porphyromonas gingivalis is an anaerobic Gram-negative bacteria, often associated with the pathogenesis of periodontitis. Periodontitis is a chronic inflammation characterized by damage to the supporting tissues of the tooth. Porphyromonas gingivalis locally can invade periodontal tissue and avoid host defence mechanisms. Porphyromonas gingivalis have virulence factors that can interfere with host immune response and cause inflammation at host tissue. The aim of this article is to provide an overview of the role of Porphyromonas gingivalis virulence factors such as capsules, fimbriae, lipopolysaccharides, and gingipain in the pathogenesis of periodontitis. The data sources were taken from PubMed and Google Scholar within 10 years. The role of Porphyromonas gingivalis capsule is to suppress the host's immune response to bacteria by reducing phagocytosis so the bacteria can survive. The roles of Porphyromonas gingivalis fimbriaeare to facilitate adhesion and invasion of bacteria to host cells so the damage will occur in the periodontal tissue. One of the roles of Porphyromoas gingivalis lipopolysaccharide is to disrupt the host immune system by disrupting the distribution of leukocytes around bacterial colonization so the bacteria can survive. The role of the Porphyromonas gingivalis gingipain is to suppress inflammatory cytokines thereby reducing the host's response by manipulating the complement system and disrupting the response of T cells. Porphyromonas gingivalis expresses several virulence factors involved in the colonization of subgingival plaque, modulates the immune response of host cells, and damages the host tissue directly so it can cause periodontitis. -
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Philips et al. BMC Genomics (2020) 21:402 https://doi.org/10.1186/s12864-020-06810-9 RESEARCH ARTICLE Open Access Analysis of oral microbiome from fossil human remains revealed the significant differences in virulence factors of modern and ancient Tannerella forsythia Anna Philips1, Ireneusz Stolarek1, Luiza Handschuh1, Katarzyna Nowis1, Anna Juras2, Dawid Trzciński2, Wioletta Nowaczewska3, Anna Wrzesińska4, Jan Potempa5,6 and Marek Figlerowicz1,7* Abstract Background: Recent advances in the next-generation sequencing (NGS) allowed the metagenomic analyses of DNA from many different environments and sources, including thousands of years old skeletal remains. It has been shown that most of the DNA extracted from ancient samples is microbial. There are several reports demonstrating that the considerable fraction of extracted DNA belonged to the bacteria accompanying the studied individuals before their death. Results: In this study we scanned 344 microbiomes from 1000- and 2000- year-old human teeth. The datasets originated from our previous studies on human ancient DNA (aDNA) and on microbial DNA accompanying human remains. We previously noticed that in many samples infection-related species have been identified, among them Tannerella forsythia, one of the most prevalent oral human pathogens. Samples containing sufficient amount of T. forsythia aDNA for a complete genome assembly were selected for thorough analyses. We confirmed that the T. forsythia-containing samples have higher amounts of the periodontitis-associated species than the control samples. Despites, other pathogens-derived aDNA was found in the tested samples it was too fragmented and damaged to allow any reasonable reconstruction of these bacteria genomes. The anthropological examination of ancient skulls from which the T. -
THE HUMAN MICROBIOTA: the ROLE of MICROBIAL COMMUNITIES in HEALTH and DISEASE La Microbiota Humana: Comunidades Microbianas En La Salud Y En La Enfermedad
ACTA BIOLÓGICA COLOMBIANA http://www.revistas.unal.edu.co/index.php/actabiol SEDE BOGOTÁ FACULTAD DE CIENCIAS ARTÍCULODEPARTAMENTO DE DE REVISIÓN BIOLOGÍA INVITADO / INVITED REVIEW THE HUMAN MICROBIOTA: THE ROLE OF MICROBIAL COMMUNITIES IN HEALTH AND DISEASE La microbiota humana: comunidades microbianas en la salud y en la enfermedad Luz Elena BOTERO1,2, Luisa DELGADO-SERRANO3,4, Martha Lucía CEPEDA HERNÁNDEZ3, Patricia DEL PORTILLO OBANDO3, María Mercedes ZAMBRANO EDER3. 1 Facultad de Medicina, Universidad Pontificia Bolivariana. Calle 78B no. 72A-109, Bloque B, Piso 5. Medellín, Colombia. 2 Unidad de Bacteriología y Micobacterias, Corporación para Investigaciones Biológicas, Unidad Pontificia Bolivariana. Carrera 72A no. 78B-141. Medellín, Colombia. 3 Corporación Corpogen. Carrera 5 no. 66A-34. Bogotá D.C., Colombia. 4 Centro de Bioinformática y Biología Computacional- BIOS. Carrera 15B no. 161. Manizales, Colombia. For correspondence. [email protected] Received: 22nd March 2015, Returned for revision: 14th April 2015, Accepted: 10th July 2015. Associate Editor: Nubia Estela Matta Camacho. Citation / Citar este artículo como: Botero LE, Delgado-Serrano L, Cepeda ML, Del Portillo P, Zambrano MM. The human microbiota: the role of microbial communities in health and disease. Acta biol. Colomb. 2016;21(1):5-15. doi: http://dx.doi.org/10.15446/abc.v21n1.49761 ABSTRACT During the last decade, there has been increasing awareness of the massive number of microorganisms, collectively known as the human microbiota, that are associated with humans. This microbiota outnumbers the host cells by approximately a factor of ten and contains a large repertoire of microbial genome-encoded metabolic processes. The diverse human microbiota and its associated metabolic potential can provide the host with novel functions that can influence host health and disease status in ways that still need to be analyzed. -
Cigarette Smoke Promotes Genomic Evolution in the Periodontal Pathogen Porphyromonas Gingivalis
University of Louisville ThinkIR: The University of Louisville's Institutional Repository Electronic Theses and Dissertations 5-2013 Cigarette smoke promotes genomic evolution in the periodontal pathogen Porphyromonas gingivalis. Josh George University of Louisville Follow this and additional works at: https://ir.library.louisville.edu/etd Recommended Citation George, Josh, "Cigarette smoke promotes genomic evolution in the periodontal pathogen Porphyromonas gingivalis." (2013). Electronic Theses and Dissertations. Paper 486. https://doi.org/10.18297/etd/486 This Master's Thesis is brought to you for free and open access by ThinkIR: The University of Louisville's Institutional Repository. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of ThinkIR: The University of Louisville's Institutional Repository. This title appears here courtesy of the author, who has retained all other copyrights. For more information, please contact [email protected]. CIGARETTE SMOKE PROMOTES GENOMIC EVOLUTION IN THE PERIODONTAL PATHOGEN PORPHYROMONAS GINGIVALIS by JOSH GEORGE B.S. Biology A Thesis Submitted to the Faculty of the School of Dentistry of the University of Louisville In Partial Fulfillment of the Requirements For the Degree of Master of Science Oral Biology University of Louisville Louisville, Kentucky May 2013 CIGARETTE SMOKE PROMOTES GENOMIC EVOLUTION IN THE PERIODONTAL PATHOGEN PORPHYROMONAS GINGIVALIS by JOSH GEORGE B.S. Biology A Thesis Approved on April 26, 2013 By the following Thesis Committee: ________________________________________________________ David Scott Ph.D. – Mentor/Director _______________________________________________________ Ted Kalbfleisch Ph.D. – Committee Member _______________________________________________________ Jan Potempa Ph.D. – Committee Member _______________________________________________________ Don Demuth Ph.D. – Committee Member ii ACKNOWLEDGMENTS I would like to thank Dr. -
From Donor to Patient: Collection, Preparation and Cryopreservation of Fecal Samples for Fecal Microbiota Transplantation
diseases Review From Donor to Patient: Collection, Preparation and Cryopreservation of Fecal Samples for Fecal Microbiota Transplantation Carole Nicco 1 , Armelle Paule 2, Peter Konturek 3 and Marvin Edeas 1,* 1 Cochin Institute, INSERM U1016, University Paris Descartes, Development, Reproduction and Cancer, Cochin Hospital, 75014 Paris, France; [email protected] 2 International Society of Microbiota, 75002 Paris, France; [email protected] 3 Teaching Hospital of the University of Jena, Thuringia-Clinic Saalfeld, 07318 Saalfeld, Germany; [email protected] * Correspondence: [email protected] Received: 6 March 2020; Accepted: 10 April 2020; Published: 15 April 2020 Abstract: Fecal Microbiota Transplantation (FMT) is suggested as an efficacious therapeutic strategy for restoring intestinal microbial balance, and thus for treating disease associated with alteration of gut microbiota. FMT consists of the administration of fresh or frozen fecal microorganisms from a healthy donor into the intestinal tract of diseased patients. At this time, in according to healthcare authorities, FMT is mainly used to treat recurrent Clostridium difficile. Despite the existence of a few existing stool banks worldwide and many studies of the FMT, there is no standard method for producing material for FMT, and there are a multitude of factors that can vary between the institutions. The main constraints for the therapeutic uses of FMT are safety concerns and acceptability. Technical and logistical issues arise when establishing such a non-standardized treatment into clinical practice with safety and proper governance. In this context, our manuscript describes a process of donor safety screening for FMT compiling clinical and biological examinations, questionnaires and interviews of donors. -
Human Microbiota Network: Unveiling Potential Crosstalk Between the Different Microbiota Ecosystems and Their Role in Health and Disease
nutrients Review Human Microbiota Network: Unveiling Potential Crosstalk between the Different Microbiota Ecosystems and Their Role in Health and Disease Jose E. Martínez †, Augusto Vargas † , Tania Pérez-Sánchez , Ignacio J. Encío , Miriam Cabello-Olmo * and Miguel Barajas * Biochemistry Area, Department of Health Science, Public University of Navarre, 31008 Pamplona, Spain; [email protected] (J.E.M.); [email protected] (A.V.); [email protected] (T.P.-S.); [email protected] (I.J.E.) * Correspondence: [email protected] (M.C.-O.); [email protected] (M.B.) † These authors contributed equally to this work. Abstract: The human body is host to a large number of microorganisms which conform the human microbiota, that is known to play an important role in health and disease. Although most of the microorganisms that coexist with us are located in the gut, microbial cells present in other locations (like skin, respiratory tract, genitourinary tract, and the vaginal zone in women) also play a significant role regulating host health. The fact that there are different kinds of microbiota in different body areas does not mean they are independent. It is plausible that connection exist, and different studies have shown that the microbiota present in different zones of the human body has the capability of communicating through secondary metabolites. In this sense, dysbiosis in one body compartment Citation: Martínez, J.E.; Vargas, A.; may negatively affect distal areas and contribute to the development of diseases. Accordingly, it Pérez-Sánchez, T.; Encío, I.J.; could be hypothesized that the whole set of microbial cells that inhabit the human body form a Cabello-Olmo, M.; Barajas, M. -
Prevotella Intermedia
The principles of identification of oral anaerobic pathogens Dr. Edit Urbán © by author Department of Clinical Microbiology, Faculty of Medicine ESCMID Online University of Lecture Szeged, Hungary Library Oral Microbiological Ecology Portrait of Antonie van Leeuwenhoek (1632–1723) by Jan Verkolje Leeuwenhook in 1683-realized, that the film accumulated on the surface of the teeth contained diverse structural elements: bacteria Several hundred of different© bacteria,by author fungi and protozoans can live in the oral cavity When these organisms adhere to some surface they form an organizedESCMID mass called Online dental plaque Lecture or biofilm Library © by author ESCMID Online Lecture Library Gram-negative anaerobes Non-motile rods: Motile rods: Bacteriodaceae Selenomonas Prevotella Wolinella/Campylobacter Porphyromonas Treponema Bacteroides Mitsuokella Cocci: Veillonella Fusobacterium Leptotrichia © byCapnophyles: author Haemophilus A. actinomycetemcomitans ESCMID Online C. hominis, Lecture Eikenella Library Capnocytophaga Gram-positive anaerobes Rods: Cocci: Actinomyces Stomatococcus Propionibacterium Gemella Lactobacillus Peptostreptococcus Bifidobacterium Eubacterium Clostridium © by author Facultative: Streptococcus Rothia dentocariosa Micrococcus ESCMIDCorynebacterium Online LectureStaphylococcus Library © by author ESCMID Online Lecture Library Microbiology of periodontal disease The periodontium consist of gingiva, periodontial ligament, root cementerum and alveolar bone Bacteria cause virtually all forms of inflammatory -
Oral Microbiota Identifies Patients in Early Onset Rheumatoid Arthritis
microorganisms Article Oral Microbiota Identifies Patients in Early Onset Rheumatoid Arthritis Anders Esberg 1,* , Linda Johansson 2, Ingegerd Johansson 1 and Solbritt Rantapää Dahlqvist 2,* 1 Department of Odontology, Umeå University, 901 87 Umeå, Sweden; [email protected] 2 Department of Public Health and Medicine, Rheumatology, Umeå University, 901 87 Umeå, Sweden; [email protected] * Correspondence: [email protected] (A.E.); [email protected] (S.R.D.) Abstract: Rheumatoid arthritis (RA) is the most common autoimmune inflammatory disease, and single periodontitis-associated bacteria have been suggested in disease manifestation. Here, the oral microbiota was characterized in relation to the early onset of RA (eRA) taking periodontal status into consideration. 16S rRNA gene amplicon sequencing of saliva bacterial DNA from 61 eRA patients without disease-modifying anti-rheumatic drugs and 59 matched controls was performed. Taxonomic classification at 98.5% was conducted against the Human Oral Microbiome Database, microbiota functions were predicted using PICRUSt, and periodontal status linked from the Swedish quality reg- ister for clinically assessed caries and periodontitis. The participants were classified into three distinct microbiota-based cluster groups with cluster allocation differences by eRA status. Independently of periodontal status, eRA patients had enriched levels of Prevotella pleuritidis, Treponema denticola, Porphyromonas endodontalis and Filifactor alocis species and in the Porphyromonas and Fusobacterium genera and functions linked to ornithine metabolism, glucosylceramidase, beta-lactamase resistance, biphenyl degradation, fatty acid metabolism and 17-beta-estradiol-17-dehydrogenase metabolism. Citation: Esberg, A.; Johansson, L.; The results support a deviating oral microbiota composition already in eRA patients compared with Johansson, I.; Dahlqvist, S.R. -
Porphyromonas Gingivalis Fimbrial Protein Mfa5 Contains a Von
ARTICLE https://doi.org/10.1038/s42003-020-01621-w OPEN Porphyromonas gingivalis fimbrial protein Mfa5 contains a von Willebrand factor domain and an intramolecular isopeptide ✉ Thomas V. Heidler 1, Karin Ernits1, Agnieszka Ziolkowska1, Rolf Claesson2 & Karina Persson 1 1234567890():,; The Gram-negative bacterium Porphyromonas gingivalis is a secondary colonizer of the oral biofilm and is involved in the onset and progression of periodontitis. Its fimbriae, of type-V, are important for attachment to other microorganisms in the biofilm and for adhesion to host cells. The fimbriae are assembled from five proteins encoded by the mfa1 operon, of which Mfa5 is one of the ancillary tip proteins. Here we report the X-ray structure of the N-terminal half of Mfa5, which reveals a von Willebrand factor domain and two IgG-like domains. One of the IgG-like domains is stabilized by an intramolecular isopeptide bond, which is the first such bond observed in a Gram-negative bacterium. These features make Mfa5 structurally more related to streptococcal adhesins than to the other P. gingivalis Mfa proteins. The structure reported here indicates that horizontal gene transfer has occurred among the bacteria within the oral biofilm. 1 Department of Chemistry, Umeå Centre for Microbial Research (UCMR), Umeå University, 90187 Umeå, Sweden. 2 Department of Odontology, Umeå ✉ University, 90187 Umeå, Sweden. email: [email protected] COMMUNICATIONS BIOLOGY | (2021) 4:106 | https://doi.org/10.1038/s42003-020-01621-w | www.nature.com/commsbio 1 ARTICLE COMMUNICATIONS BIOLOGY | https://doi.org/10.1038/s42003-020-01621-w imbriae (also called pili) are long filamentous protein poly- In this study, we present the crystal structure of the N-terminal mers that project from the bacterial surface and are crucial for half of Mfa5, residues 99–664, at 1.8 Å resolution. -
The Role of Tannerella Forsythia and Porphyromonas Gingivalis in Pathogenesis of Esophageal Cancer Bartosz Malinowski1, Anna Węsierska1, Klaudia Zalewska1, Maya M
Malinowski et al. Infectious Agents and Cancer (2019) 14:3 https://doi.org/10.1186/s13027-019-0220-2 REVIEW Open Access The role of Tannerella forsythia and Porphyromonas gingivalis in pathogenesis of esophageal cancer Bartosz Malinowski1, Anna Węsierska1, Klaudia Zalewska1, Maya M. Sokołowska1, Wiktor Bursiewicz1*, Maciej Socha3, Mateusz Ozorowski1, Katarzyna Pawlak-Osińska2 and Michał Wiciński1 Abstract Tannerella forsythia and Porphyromonas gingivalis are anaerobic, Gram-negative bacterial species which have been implicated in periodontal diseases as a part of red complex of periodontal pathogens. Esophageal cancer is the eight most common cause of cancer deaths worldwide. Higher rates of esophageal cancer cases may be attributed to lifestyle factors such as: diet, obesity, alcohol and tobacco use. Moreover, the presence of oral P. gingivalis and T. forsythia has been found to be associated with an increased risk of esophageal cancer. Our review describes theroleofP. gingivalis and T. forsythia in signaling pathways responsible for cancer development. It has been shown that T. forsythia may induce pro-inflammatory cytokines such as IL-1β and IL-6 by CD4 + T helper cells and TNF-α. Moreover, gingipain K produced by P. gingivalis, affects hosts immune system by degradation of immunoglobulins and complement system (C3 and C5 components). Discussed bacteria are responsible for overexpression of MMP-2, MMP-2 and GLUT transporters. Keywords: Esophageal cancer, Tannerella forsythia, Porphyromonas gingivalis Background of cases) and adenocarcinoma (10%). Currently, there is a Cancer is a significant problem in the modern world. It downward trend in the incidence of squamous cell carcin- concerns the entire population. In developed countries, oma and an increase in adenocarcinoma [1].