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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
On a Hitherto Unknown Phyllosoma Larval Species of the Slipper Lobster Scyllarus (Decapoda, Scyllaridae) in the Hawaiian Archipelago L
Pacific Science (1977), vol. 31, no. 2 © 1977 by The University Press of Hawaii. All rights reserved On a Hitherto Unknown Phyllosoma Larval Species of the Slipper Lobster Scyllarus (Decapoda, Scyllaridae) in the Hawaiian Archipelago l MARTIN W. JOHNSON 2 IN A PREVIOUS ANALYSIS of plankton from thorax has a short spine situated at the 140 scattered oceanographic stations in the base of each of legs 1-4 (Figure 1-2). Coxal Hawaiian area, mainly around Oahu Island, and subexopodal spines (Figure I-I, sp.) are six scyllarid larval species were found (John present and the exopods of legs I, 2, and 3 son 1971). Five ofthese species were assigned are provided with 21, 21, and 19 pairs of respectively to Parribacus antarcticus (Lund); swimming setae, respectively; pleopods and Scyllarides squamosus (H. Milne Edwards); uropods are bilobed buds (Figure 1-3). The Arctides regalis Holthuis; Scyllarus timidus eyestalks are 2.4 mm long and the first Holthuis; and Scyllarus modestus Holthuis. antennae are about equal in length to the These five species comprise all of the then slender second antennae (Figure 1-4). Only known adult slipper lobsters of the Hawaiian very rudimentary second maxillae and first area. The sixth larval species, a Scyllarus, maxillipeds are present and the second maxi1 could not be identified specifically and lipeds bear no exopod buds (Figure 1-5). appears to represent an unknown adult species of that genus inhabiting the area. It is of interest to report here yet another unknown larva ofScyllarus that was probably Scyllarus sp. phyllosoma. Length 30.1 mm, produced in this relatively isolated oceanic final fully gilled stage (Figure 2-6). -
Transcriptome Analysis and Discovery of Genes Involved in Immune Pathways in Solen Strictus (Gould, 1861) Under Vibrio Anguillarum T
Fish and Shellfish Immunology 88 (2019) 237–243 Contents lists available at ScienceDirect Fish and Shellfish Immunology journal homepage: www.elsevier.com/locate/fsi Full length article Transcriptome analysis and discovery of genes involved in immune pathways in Solen strictus (Gould, 1861) under Vibrio anguillarum T ∗ Qiang Wanga, Jing Lib, Hongmei Guoa, a Department of Animal Nutrition and Aquaculture, Shandong Vocational Animal Science and Veterinary College, 88 Shengli East Street, Weifang 261061, China b College of Economics and Management in Shanghai Ocean University, Shanghai 201306, China ARTICLE INFO ABSTRACT Keywords: The Solen strictus (Gould, 1861) has been recognized as an important marine economic bivalve in Eastern and Solen strictus Southeast Asia. To gain a better understanding of the S. strictus immune system and its related genes in response Vibrio anguillarum to bacterial infections, we performed a comparative gene transcription analysis from S. strictus with Vibrio an- Transcriptome guillarum through RNA-Seq technology, meanwhile the differentially expressed genes (DEGs) were investigated. Immune response After assembly, a total of 195,774 transcripts with an average length of 996 bp were obtained. Total 153,038 unigenes were annotated in the nr, Swiss-Prot, KEGG, COG, KOG, GO and Pfam databases, and 56,597 unigenes (36.98%) were annotated in at least one database. After bacterial challenge, there were 1588 significant dif- ferentially expressed genes (DEGs) between the challenged and control groups, including 999 up-regulated and 589 down-regulated genes. All the DEGs were classified into three gene ontology categories, and allocated to 225 KEGG pathways. Immune-related genes were detected from immune system pathways among the top 20 en- riched pathways, such as Toll-like receptor signaling, RIG-I-like receptor signaling and NOD-like receptor sig- naling pathway. -
Marine Invertebrate Diversity in Aristotle's Zoology
Contributions to Zoology, 76 (2) 103-120 (2007) Marine invertebrate diversity in Aristotle’s zoology Eleni Voultsiadou1, Dimitris Vafi dis2 1 Department of Zoology, School of Biology, Aristotle University of Thessaloniki, GR - 54124 Thessaloniki, Greece, [email protected]; 2 Department of Ichthyology and Aquatic Environment, School of Agricultural Sciences, Uni- versity of Thessaly, 38446 Nea Ionia, Magnesia, Greece, dvafi [email protected] Key words: Animals in antiquity, Greece, Aegean Sea Abstract Introduction The aim of this paper is to bring to light Aristotle’s knowledge Aristotle was the one who created the idea of a general of marine invertebrate diversity as this has been recorded in his scientifi c investigation of living things. Moreover he works 25 centuries ago, and set it against current knowledge. The created the science of biology and the philosophy of analysis of information derived from a thorough study of his biology, while his animal studies profoundly infl uenced zoological writings revealed 866 records related to animals cur- rently classifi ed as marine invertebrates. These records corre- the origins of modern biology (Lennox, 2001a). His sponded to 94 different animal names or descriptive phrases which biological writings, constituting over 25% of the surviv- were assigned to 85 current marine invertebrate taxa, mostly ing Aristotelian corpus, have happily been the subject (58%) at the species level. A detailed, annotated catalogue of all of an increasing amount of attention lately, since both marine anhaima (a = without, haima = blood) appearing in Ar- philosophers and biologists believe that they might help istotle’s zoological works was constructed and several older in the understanding of other important issues of his confusions were clarifi ed. -
Shell Morphology and Sperm Ultrastructure of Solen Tehuelchus Hanley, 1842 (Bivalvia: Solenidae): New Taxonomic Characters Author(S): Amanda Bonini, Gisele O
CORE Metadata, citation and similar papers at core.ac.uk Provided by Repositorio da Producao Cientifica e Intelectual da Unicamp Shell Morphology and Sperm Ultrastructure of Solen tehuelchus Hanley, 1842 (Bivalvia: Solenidae): New Taxonomic Characters Author(s): Amanda Bonini, Gisele O. Introíni Lenita F. Tallarico, Fabrizio M. Machado and Shirlei M. Recco-Pimentel Source: American Malacological Bulletin, 34(2):73-78. Published By: American Malacological Society https://doi.org/10.4003/006.034.0202 URL: http://www.bioone.org/doi/full/10.4003/006.034.0202 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Amer. Malac. Bull. 34(2): 73–78 (2016) RESEARCH NOTE Shell morphology and sperm ultrastructure of Solen tehuelchus Hanley, 1842 (Bivalvia: Solenidae): New taxonomic characters Amanda Bonini1, Gisele O. Introíni1, 3, Lenita F. Tallarico1, Fabrizio M. Machado2 and Shirlei M. Recco-Pimentel1 1Departamento de Biologia Estrutural e Funcional, Instituto de Biologia, Universidade Estadual de Campinas, Rua Charles Darwin, s/n. -
Seasonal Reproductive Anatomy and Sperm Storage in Pleurocerid Gastropods (Cerithioidea: Pleuroceridae) Nathan V
989 ARTICLE Seasonal reproductive anatomy and sperm storage in pleurocerid gastropods (Cerithioidea: Pleuroceridae) Nathan V. Whelan and Ellen E. Strong Abstract: Life histories, including anatomy and behavior, are a critically understudied component of gastropod biology, especially for imperiled freshwater species of Pleuroceridae. This aspect of their biology provides important insights into understanding how evolution has shaped optimal reproductive success and is critical for informing management and conser- vation strategies. One particularly understudied facet is seasonal variation in reproductive form and function. For example, some have hypothesized that females store sperm over winter or longer, but no study has explored seasonal variation in accessory reproductive anatomy. We examined the gross anatomy and fine structure of female accessory reproductive structures (pallial oviduct, ovipositor) of four species in two genera (round rocksnail, Leptoxis ampla (Anthony, 1855); smooth hornsnail, Pleurocera prasinata (Conrad, 1834); skirted hornsnail, Pleurocera pyrenella (Conrad, 1834); silty hornsnail, Pleurocera canaliculata (Say, 1821)). Histological analyses show that despite lacking a seminal receptacle, females of these species are capable of storing orientated sperm in their spermatophore bursa. Additionally, we found that they undergo conspicuous seasonal atrophy of the pallial oviduct outside the reproductive season, and there is no evidence that they overwinter sperm. The reallocation of resources primarily to somatic functions outside of the egg-laying season is likely an adaptation that increases survival chances during winter months. Key words: Pleuroceridae, Leptoxis, Pleurocera, freshwater gastropods, reproduction, sperm storage, anatomy. Résumé : Les cycles biologiques, y compris de l’anatomie et du comportement, constituent un élément gravement sous-étudié de la biologie des gastéropodes, particulièrement en ce qui concerne les espèces d’eau douce menacées de pleurocéridés. -
Molecular Phylogeny of the Bivalve Superfamily Galeommatoidea
Goto et al. BMC Evolutionary Biology 2012, 12:172 http://www.biomedcentral.com/1471-2148/12/172 RESEARCH ARTICLE Open Access Molecular phylogeny of the bivalve superfamily Galeommatoidea (Heterodonta, Veneroida) reveals dynamic evolution of symbiotic lifestyle and interphylum host switching Ryutaro Goto1,2*, Atsushi Kawakita3, Hiroshi Ishikawa4, Yoichi Hamamura5 and Makoto Kato1 Abstract Background: Galeommatoidea is a superfamily of bivalves that exhibits remarkably diverse lifestyles. Many members of this group live attached to the body surface or inside the burrows of other marine invertebrates, including crustaceans, holothurians, echinoids, cnidarians, sipunculans and echiurans. These symbiotic species exhibit high host specificity, commensal interactions with hosts, and extreme morphological and behavioral adaptations to symbiotic life. Host specialization to various animal groups has likely played an important role in the evolution and diversification of this bivalve group. However, the evolutionary pathway that led to their ecological diversity is not well understood, in part because of their reduced and/or highly modified morphologies that have confounded traditional taxonomy. This study elucidates the taxonomy of the Galeommatoidea and their evolutionary history of symbiotic lifestyle based on a molecular phylogenic analysis of 33 galeommatoidean and five putative galeommatoidean species belonging to 27 genera and three families using two nuclear ribosomal genes (18S and 28S ribosomal DNA) and a nuclear (histone H3) and mitochondrial (cytochrome oxidase subunit I) protein-coding genes. Results: Molecular phylogeny recovered six well-supported major clades within Galeommatoidea. Symbiotic species were found in all major clades, whereas free-living species were grouped into two major clades. Species symbiotic with crustaceans, holothurians, sipunculans, and echiurans were each found in multiple major clades, suggesting that host specialization to these animal groups occurred repeatedly in Galeommatoidea. -
A Zooarchaeological Perspective on Late Bronze and Early Iron Age Animal Utilization at Kinet Höyük (Turkey)
Life on the Periphery, Life at the Crossroads: A Zooarchaeological Perspective on Late Bronze and Early Iron Age Animal Utilization at Kinet Höyük (Turkey). by Radovan Kabatiar A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Department of Near and Middle Eastern Civilizations University of Toronto © Copyright by Radovan Kabatiar 2017 Life on the Periphery, Life at the Crossroads: A Zooarchaeological Perspective on Late Bronze and Early Iron Age Animal Utilization at Kinet Höyük (Turkey). Radovan Kabatiar Doctor of Philosophy Department of Near and Middle Eastern Civilizations University of Toronto 2017 Abstract This study examines faunal skeletal remains from Kinet Höyük, a small harbour site in the Plain of Issos in the northeast corner of the Mediterranean. The faunal material in this study covers the period of approximately six and a half centuries in the long history of the site, spanning from the Late Bronze Age I through Late Bronze Age II, when the site was under Hittite control, and ends with the Early Iron Age. It aims to contribute to the growing body of environmental studies helping to understand and reconstruct events that mark the collapse of Late Bronze Age polities, and the following era of transformation and formation of new political and geographical entities. Based on the analysis of nearly 35,000 animal bones, I argue that the local population continued occupation of the site and adjusted their subsistence strategies to the changing geopolitical, economic and climatic conditions, despite a decline observed toward the end of the Late Bronze Age, and that the modifications seen in animal husbandry and exploitation of wild fauna reflect a period of hardship, rather than influx of new settlers. -
Living Resources Report Texas A&M University-Corpus Christi Results - Open Bay Habitat
Center for Coastal Studies CCBNEP Living Resources Report Texas A&M University-Corpus Christi Results - Open Bay Habitat B. Living Resources - Habitats Detailed community profiles of estuarine habitats within the CCBNEP study area are not available. Therefore, in the following sections, the organisms, community structure, and ecosystem processes and functions of the major estuarine habitats (Open Bay, Oyster Reef, Hard Substrate, Seagrass Meadow, Coastal Marsh, Tidal Flat, Barrier Island, and Gulf Beach) within the CCBNEP study area are presented. The following major subjects will be addressed for each habitat: (1) Physical setting and processes; (2) Producers and Decomposers; (3) Consumers; (4) Community structure and zonation; and (5) Ecosystem processes. HABITAT 1: OPEN BAY Table Of Contents Page 1.1. Physical Setting & Processes ............................................................................ 45 1.1.1 Distribution within Project Area ......................................................... 45 1.1.2 Historical Development ....................................................................... 45 1.1.3 Physiography ...................................................................................... 45 1.1.4 Geology and Soils ................................................................................ 46 1.1.5 Hydrology and Chemistry ................................................................... 47 1.1.5.1 Tides .................................................................................... 47 1.1.5.2 Freshwater -
STATE of BIODIVERSITY in the MEDITERRANEAN (2-3 P
UNEP(DEC)/MED WG.231/18 17 April 2003 ENGLISH MEDITERRANEAN ACTION PLAN Meeting of the MED POL National Coordinators Sangemini, Italy, 27 - 30 May 2003 STRATEGIC ACTION PROGRAMME GUIDELINES DEVELOPMENT OF ECOLOGICAL STATUS AND STRESS REDUCTION INDICATORS FOR THE MEDITERRANEAN REGION In cooperation with UNEP Athens, 2003 TABLE OF CONTENTS Pages 1. INTRODUCTION ......................................................................................................... 1 2. AIMS OF THE REPORT .............................................................................................. 2 3. STATE OF BIODIVERSITY IN THE MEDITERRANEAN............................................. 2 Species Diversity................................................................................................................. 2 Ecosystems/Communities .................................................................................................. 3 Pelagic ............................................................................................................................... 3 Benthic ............................................................................................................................... 4 4. ECOSYSTEM CHANGES DUE TO ANTHROPOGENIC IMPACT............................... 6 Microbial contamination...................................................................................................... 6 Industrial pollution .............................................................................................................. 6 Oil -
Geology and Paleontology of the Late Miocene Wilson Grove Formation at Bloomfield Quarry, Sonoma County, California
Geology and Paleontology of the Late Miocene Wilson Grove Formation at Bloomfield Quarry, Sonoma County, California 2 cm 2 cm Scientific Investigations Report 2019–5021 U.S. Department of the Interior U.S. Geological Survey COVER. Photographs of fragments of a walrus (Gomphotaria pugnax Barnes and Raschke, 1991) mandible from the basal Wilson Grove Formation exposed in Bloomfield Quarry, just north of the town of Bloomfield in Sonoma County, California (see plate 8 for more details). The walrus fauna at Bloomfield Quarry is the most diverse assemblage of walrus yet reported worldwide from a single locality. cm, centimeter. (Photographs by Robert Boessenecker, College of Charleston.) Geology and Paleontology of the Late Miocene Wilson Grove Formation at Bloomfield Quarry, Sonoma County, California By Charles L. Powell II, Robert W. Boessenecker, N. Adam Smith, Robert J. Fleck, Sandra J. Carlson, James R. Allen, Douglas J. Long, Andrei M. Sarna-Wojcicki, and Raj B. Guruswami-Naidu Scientific Investigations Report 2019–5021 U.S. Department of the Interior U.S. Geological Survey U.S. Department of the Interior DAVID BERNHARDT, Secretary U.S. Geological Survey James F. Reilly II, Director U.S. Geological Survey, Reston, Virginia: 2019 For more information on the USGS—the Federal source for science about the Earth, its natural and living resources, natural hazards, and the environment—visit https://www.usgs.gov/ or call 1–888–ASK–USGS (1–888–275–8747). For an overview of USGS information products, including maps, imagery, and publications, visit https://store.usgs.gov/. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S.