Stabilisation of Aragonite: the Role of Mg2+ and Other Impurity Ions
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Database of Global Glendonite and Ikaite Records Throughout The
Discussions https://doi.org/10.5194/essd-2020-222 Earth System Preprint. Discussion started: 9 September 2020 Science c Author(s) 2020. CC BY 4.0 License. Open Access Open Data Database of global glendonite and ikaite records throughout the Phanerozoic Mikhail Rogov1, Victoria Ershova1,2, Oleg Vereshchagin2, Kseniia Vasileva2, Kseniia Mikhailova2, Aleksei Krylov2,3 5 1 Geological Institute of RAS, Moscow 119017, Russia 2 Institute of Earth Sciences, St. Petersburg State University, 199034 St. Petersburg, Russia 3 VNIIOkeangeologia, 190121, St. Petersburg, Russia Correspondence to: Mikhail Rogov ([email protected]) 10 Abstract. This database of Phanerozoic occurrences and isotopic characteristics of metastable cold-water calcium carbonate hexahydrate (ikaite; CaCO3·6H2O) and their associated carbonate pseudomorphs (glendonites) has been compiled from academic publications and open-access reports. Our database including 690 occurrences reveals that glendonites characterize cold-water environments, although their distribution is highly irregular in space and time. A significant body of evidence 15 suggests that glendonite occurrences are restricted mainly to cold-water settings, however they do not occur during every glaciation or cooling event of the Phanerozoic. While Quaternary glendonites and ikaites have been described from all major ocean basins, older occurrences have a patchy distribution, which may suggest poor preservation potential of both carbonate concretions and older sediments. The data file described in this paper is available on Zenodo at https://doi.org/10.5281/zenodo.3991964 (Rogov et al., 2020). 20 1 Introduction Metastable cold-water calcium carbonate hexahydrate (ikaite; CaCO3·6H2O) and their associated carbonate pseudomorphs (glendonites) have attracted considerable attention during the past few decades, mainly due to their utility for palaeoenvironmental (especially palaeoclimatic) reconstructions (Kemper and Schmitz, 1975, 1981; Kaplan, 1978, 1979, 1980; Suess et al., 1982, among others). -
Aragonite Formation in Confinements: a Step Toward Understanding Polymorph Control COMMENTARY Yifei Xua,B,C and Nico A
COMMENTARY Aragonite formation in confinements: A step toward understanding polymorph control COMMENTARY Yifei Xua,b,c and Nico A. J. M. Sommerdijka,b,c,1 Calcium carbonate (CaCO3) is one of the most com- unclear but were generally attributed to the interac- mon minerals on Earth; it not only forms rocks like tion between the acidic functional groups of the limestone or marble but is also a main component of biomacromolecules and the mineral components. Ad- biominerals such as pearls, the nacre of seashells, and ditionally, it was reported that a macromolecular sea-urchin skeletons (1). Despite many years of re- hydrogel-like 3D network is formed before the miner- search, the polymorphism of CaCO3 is still far from alization of nacre (11), which may play a role in the being understood. CaCO3 has three anhydrous crys- crystallization process by confining the crystallization talline forms: calcite, aragonite, and vaterite, with a to defined small volumes. Nonetheless, confinement decreasing thermodynamic stability under aqueous has never been directly correlated with aragonite for- ambient conditions (calcite > aragonite > vaterite) mation in biominerals, although its capability of con- (2). While vaterite is rare in nature, calcite and arago- trolling crystal orientation and polymorphism has nite are both frequently found in rocks or biominerals been shown in many recent reports (12–15). (1). A well-known example is the aragonite structure of Now, Zeng et al. (5) explore for the first time the nacre (3), where the organization of the crystals leads impact of confinement on aragonite formation. By to extraordinary mechanical performance. However, precipitating CaCO3 within the cylindrical pores of in synthetic systems, crystallization experiments only track-etched membranes (Fig. -
Ikaite Is One Mineral We Will Likely Never Have in Our Collections, Unless We Have Some Well-Connected Friends and a Super-Cooled Environment to Store It In
Rdosdladq1//2Lhmdq`knesgdLnmsg9Hj`hsd Ikaite is one mineral we will likely never have in our collections, unless we have some well-connected friends and a super-cooled environment to store it in. Although this month’s mineral falls apart at temperatures above freezing, still we can see its crystal forms and habits, as they have been painstakingly and accurately preserved by the calcite crystals that replaced them. OGXRHB@K OQNODQSHDR (Because ikaite is unstable at ambient temperatures, some of the mineral’s physical properties have not been accurately determined.) Chemistry: CaCO3A6H20 Hydrous Calcium Carbonate or Calcium Carbonate Hexahydrate Class: Hydrous Carbonates Subclass: Hydrous Carbonates without foreign cations Crystal System: Monoclinic Crystal Habits: Usually tabular, thin in one dimension; stalactitic in pendant growths; stalagmitic as columns; also encrustations Color: Chalky white Luster: Earthy, dull Transparency: Translucent to opaque Streak: White Refractive Index: 1.45-1.54 Cleavage: None Figure 1 Monoclinic crystal. Fracture: Uncertain Hardness: Uncertain, believed to be softer than calcite (Mohs 3.0) Specific Gravity: 1.8 Luminescence: Uncertain Distinctive Features and Tests: Unstable at room temperature, quickly decomposes to water and calcite Dana Classification Number: 15.1.4.1 M @L D The name “ikaite” (correct pronunciation IKE-a-ite) derives from the mineral’s type locality at Ikka (formerly spelled “Ika”) Fjord, Invigtut, Greenland. Ikaite pseudomorphs in nodule or rosette forms are also known as “glendonite,” a name derived from their discovery locality off the southern coast of New South Wales, Australia. Other names for pseudomorphs of calcite after ikaite are derived from locality names and include “fundylite,” “jarrowite,” “gennoishi,” “gersternkörner,” and “White Sea hornlets.” BNL ONRHSHNM Before delving into ikaite’s composition, you may enjoy reading the information on pseudomorphs in the box on the next page. -
Unleashing the Potential of Glendonite: a Mineral Archive for Biogeochemical Processes and Paleoenvironmental Conditions
RESEARCH FOCUS: RESEARCH FOCUS Unleashing the potential of glendonite: A mineral archive for biogeochemical processes and paleoenvironmental conditions Jörn Peckmann Institut für Geologie, Universität Hamburg, 20146 Hamburg, Germany Ikaite (CaCO3 × 6H2O) is a calcium carbonate mineral that forms at low Temperature may not be the only trigger for the disintegration of temperatures close to the freezing point of water and is metastable under ikaite. Disintegration has been suggested to be favored by (1) a decrease surface conditions in natural environments. It occurs as an early diagenetic in alkalinity and concentration of dissolved phosphate (Bischoff et al., mineral in marine sediments, where it grows close to the sediment-water 1993), or (2) changing pore-water chemistries reflecting the transition interface, typically forming centimeter-sized single euhedral crystals to from an environment shaped by organoclastic sulfate reduction to an stellate crystal aggregates (Zabel and Schulz, 2001). Its precipitation is environment shaped by anaerobic oxidation of methane (Greinert and favored by elevated carbonate alkalinity, high pH, and high concentrations Derkachev, 2004). Upon destabilization, ikaite transforms into a mush of dissolved phosphate (Bischoff et al., 1993; Hu et al., 2015; Zhou et al., of water and small crystals of calcite and sometimes vaterite, another 2015). Ikaite readily transforms into calcite upon an increase of temperature polymorph of calcium carbonate (Suess et al., 1982; Selleck et al., 2007). or a change of pore-water chemistry (Pauly, 1963; Swainson and Ham- The secondary phase formed first is represented by carbonate bundles mond, 2001); the external shape of crystals and crystal aggregates is com- referred to as ‘replacive calcite’ (Teichert and Luppold, 2013). -
Characteristics and Crystal Structure of Calcareous Deposit Films Formed by Electrodeposition Process in Artificial and Natural Seawater
coatings Article Characteristics and Crystal Structure of Calcareous Deposit Films Formed by Electrodeposition Process in Artificial and Natural Seawater Jun-Mu Park 1, Myeong-Hoon Lee 1 and Seung-Hyo Lee 2,* 1 Division of Marine Engineering, Korea Maritime and Ocean University, Busan 49112, Korea; [email protected] (J.-M.P.); [email protected] (M.-H.L.) 2 Department of Ocean Advanced Materials Convergence Engineering, Korea Maritime and Ocean University, Busan 49112, Korea * Correspondence: [email protected] Abstract: In this study, we tried to form the calcareous deposit films by the electrodeposition process. The uniform and compact calcareous deposit films were formed by electrodeposition process and their crystal structure and characteristics were analyzed and evaluated using various surface analytical techniques. The mechanism of formation for the calcareous deposit films could be confirmed and the role of magnesium was verified by experiments in artificial and natural seawater solutions. The highest amount of the calcareous deposit film was obtained at 5 A/m2 while current densities between 1–3 A/m2 facilitated the formation of the most uniform and dense layers. In addition, the adhesion characteristics were found to be the best at 3 A/m2. The excellent characteristics of the calcareous deposit films were obtained when the dense film of brucite-Mg(OH)2 and metastable aragonite-CaCO3 was formed in the appropriate ratio. Citation: Park, J.-M.; Lee, M.-H.; Lee, Keywords: electrodeposition process; calcareous deposit films; aragonite crystal structure; seawater S.-H. Characteristics and Crystal Structure of Calcareous Deposit Films Formed by Electrodeposition Process in Artificial and Natural Seawater. -
Alphabetical List
LIST L - MINERALS - ALPHABETICAL LIST Specific mineral Group name Specific mineral Group name acanthite sulfides asbolite oxides accessory minerals astrophyllite chain silicates actinolite clinoamphibole atacamite chlorides adamite arsenates augite clinopyroxene adularia alkali feldspar austinite arsenates aegirine clinopyroxene autunite phosphates aegirine-augite clinopyroxene awaruite alloys aenigmatite aenigmatite group axinite group sorosilicates aeschynite niobates azurite carbonates agate silica minerals babingtonite rhodonite group aikinite sulfides baddeleyite oxides akaganeite oxides barbosalite phosphates akermanite melilite group barite sulfates alabandite sulfides barium feldspar feldspar group alabaster barium silicates silicates albite plagioclase barylite sorosilicates alexandrite oxides bassanite sulfates allanite epidote group bastnaesite carbonates and fluorides alloclasite sulfides bavenite chain silicates allophane clay minerals bayerite oxides almandine garnet group beidellite clay minerals alpha quartz silica minerals beraunite phosphates alstonite carbonates berndtite sulfides altaite tellurides berryite sulfosalts alum sulfates berthierine serpentine group aluminum hydroxides oxides bertrandite sorosilicates aluminum oxides oxides beryl ring silicates alumohydrocalcite carbonates betafite niobates and tantalates alunite sulfates betekhtinite sulfides amazonite alkali feldspar beudantite arsenates and sulfates amber organic minerals bideauxite chlorides and fluorides amblygonite phosphates biotite mica group amethyst -
The Crystallization Process of Vaterite Microdisc Mesocrystals Via Proto-Vaterite Amorphous Calcium Carbonate Characterized by Cryo-X-Ray Absorption Spectroscopy
crystals Communication The Crystallization Process of Vaterite Microdisc Mesocrystals via Proto-Vaterite Amorphous Calcium Carbonate Characterized by Cryo-X-ray Absorption Spectroscopy Li Qiao 1, Ivo Zizak 2, Paul Zaslansky 3 and Yurong Ma 1,* 1 School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China; [email protected] 2 Department Structure and Dynamics of Energy Materials, Helmholtz-Zentrum-Berlin, 14109 Berlin, Germany; [email protected] 3 Department for Operative and Preventive Dentistry, Charité-Universitätsmedizin Berlin, 10117 Berlin, Germany; [email protected] * Correspondence: [email protected] Received: 27 July 2020; Accepted: 23 August 2020; Published: 26 August 2020 Abstract: Investigation on the formation mechanism of crystals via amorphous precursors has attracted a lot of interests in the last years. The formation mechanism of thermodynamically meta-stable vaterite in pure alcohols in the absence of any additive is less known. Herein, the crystallization process of vaterite microdisc mesocrystals via proto-vaterite amorphous calcium carbonate (ACC) in isopropanol was tracked by using Ca K-edge X-ray absorption spectroscopy (XAS) characterization under cryo-condition. Ca K-edge X-ray absorption near edge structure (XANES) spectra show that the absorption edges of the Ca ions of the vaterite samples with different crystallization times shift to lower photoelectron energy while increasing the crystallization times from 0.5 to 20 d, indicating the increase of crystallinity degree of calcium carbonate. Ca K-edge extended X-ray absorption fine structure (EXAFS) spectra exhibit that the coordination number of the nearest neighbor atom O around Ca increases slowly with the increase of crystallization time and tends to be stable as 4.3 ( 1.4). -
(1014) Calcite Twins Mimicking Crystallographic Ordering
minerals Article Diffraction Features from (1014) Calcite Twins Mimicking Crystallographic Ordering Péter Németh 1,2 1 Research Centre for Astronomy and Earth Sciences, Institute for Geological and Geochemical Research, Eötvös Loránd Research Network, Budaörsi Street 45, 1112 Budapest, Hungary; [email protected] 2 Department of Earth and Environmental Sciences, University of Pannonia, Egyetem út 10, 8200 Veszprém, Hungary Abstract: During phase transitions the ordering of cations and/or anions along specific crystallo- graphic directions can take place. As a result, extra reflections may occur in diffraction patterns, which can indicate cell doubling and the reduction of the crystallographic symmetry. However, similar features may also arise from twinning. Here the nanostructures of a glendonite, a calcite (CaCO3) pseudomorph after ikaite (CaCO3·6H2O), from Victoria Cave (Russia) were studied using transmission electron microscopy (TEM). This paper demonstrates the occurrence of extra reflections at positions halfway between the Bragg reflections of calcite in 0kl electron diffraction patterns and the doubling of d104 spacings (corresponding to 2·3.03 Å) in high-resolution TEM images. Interestingly, these diffraction features match with the so-called carbonate c-type reflections, which are associated with Mg and Ca ordering, a phenomenon that cannot occur in pure calcite. TEM and crystallographic analysis suggests that, in fact, (1014) calcite twins and the orientation change of CO3 groups across the twin interface are responsible for the extra reflections. Citation: Németh, P. Diffraction Keywords: electron diffraction; c-type reflections; ordering; twinning; calcite; glendonite; TEM Features from (1014) Calcite Twins Mimicking Crystallographic Ordering. Minerals 2021, 11, 720. https://doi.org/10.3390/ 1. -
New Aragonite 87Sr/86Sr Records of Mesozoic Ammonoids and Approach to the Problem of N, O, C and Sr Isotope Cycles in the Evolution of the Earth” by Yuri D
VOLUMINA JURASSICA, 2018, XVI (1): – Comments on “New aragonite 87Sr/86Sr records of Mesozoic ammonoids and approach to the problem of N, O, C and Sr isotope cycles in the evolution of the Earth” by Yuri D. Zakharov, Sergei I. Dril, Yasunari Shigeta, Alexander M. Popov, Eugenij Y. Baraboshkin, Irina A. Michailova and Peter P. Safronov [Sedimentary Geology, 364 (2018): 1–13] Mikhail A. ROGOV1 Keywords: ammonoids, Sr isotopes, erroneous determination. Abstract. Comments are provided on a published paper on 87Sr/86Sr records of Mesozoic ammonoids [Yuri D. Zakharov, Sergei I. Dril, Yasunari Shigeta, Alexander M. Popov, Eugenij Y. Baraboshkin, Irina A. Michailova, and Peter P. Safronov, New aragonite 87Sr/86Sr re- cords of Mesozoic ammonoids and approach to the problem of N, O, C and Sr isotope cycles in the evolution of the Earth, Sedimentary Geology, 364 (2018): 1–13], where insufficiently or erroneously dated materials have been used. The names of the Jurassic ammonites used in the discussed article are erroneous, and these names are sometimes allocated wrong stratigraphic and geographic information. For example, “Procerites funatus” from the Callovian of the Ryazan region following its features and mode of preservation should be re-as- signed to the Volgian Kachpurites cheremkhensis from the Yaroslavl area. These problems partly result from the study of specimens deliv- ered from fossil dealers. Therefore, the interpretation of the differences in Lower Albian ammonite Sr isotope values as function of their habitat depths given by these authors should rather be explained by their different geologic age. Due to the significant oscillation of Sr isotope values in marine carbonates through time and the uniformity of the stron- tium isotope compositions of different basins, Sr-isotope chemostratigraphy provides a powerful tool for correlation. -
Refinement of the Crystal Structure of the Aragonite Phase of Caco3
JOURNAL OF RESEAR CH of the N a tional Bureau of Standards - A. Physics and Chemistry Vol. 75A No. 1, January - February 197 1 Refinement of the Crystal Structure of the Aragonite Phase of CaC0 3 B. Dickens and J. S. Bowen* Institute for Materials Research National Bureau of Standards Washington, D.C . 20234 (July 31, 1970) Arago nit e (C aCO ,,) c ry stalli zes in th e unit cell a = 4.9598(5) /\ . 6 = 7.9641(9) A, and c= 5.7379(6) A at 25 °C with four form ula we ights in space-group Pm cn. The structure has been re fin ed to N".= 0.024. N= 0.040 using 765 x- ray reAections from a sin gJe crystal. The Ca ion is coordinat ed to nin e oxygens with Ca .. ° distances III the range 2.414(2) A to 2.653(1) A. The two un ique C- O di s ta nces in th e CO" group are 1.288(2) ;\ (o n the mirror plan e) and 1. 283(1) A. T he two un ique O- C-o a ngles are 119.6(2 )" (acro ss the mirror plane) and 120.1 3(8)". The dis tances a nd angles in th e CO" "roup are not signifi cantl y d iffe rent at the 95 pe rcent confidence level. " Key word s; Calcium carbonates; carbonates; crystal s tructure; s in gle c rys t.al x- ray diffracti on. 1. Introduction density, 2.944 g ' cm- 3 ; Crystal: material available was heavily twinned; a s ma lJ wedge was th e largest crystal Aragonite (CaCO:d is found in nature as a mineral fragment found whi ch showed no evidence of twinning and is an important biomineral because of its presence under optical and x·ray examination; this wedge was in coral, clam shells, gall stones, and otoliths. -
Tunicates with Composite Calcareous Skeletons
Journal of Paleontology, 94(4), 2020, p. 748–757 Copyright © 2020, The Paleontological Society. This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/ licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited. 0022-3360/20/1937-2337 doi: 10.1017/jpa.2019.109 A rare case of an evolutionary late and ephemeral biomineralization: tunicates with composite calcareous skeletons Jobst Wendt Fachbereich Geowissenschaften der Universität Tübingen, Germany <[email protected]> Abstract.—In contrast to almost all other invertebrate phyla that constructed biomineralized skeletons during the “Cambrian explosion” and maintained them during the entire fossil record, ascidian tunicates evolved this protective and stabilizing advantage only during the Permian, although soft-bodied representatives of this subphylum made their first appearance already in the early Cambrian. It remains enigmatic why these compound calcareous skeletons persisted only until the Late Triassic, subsequently followed by less-rigid internal skeletons from the Lower Jurassic onwards, which consist of scattered isolated spicules only. In addition to recently described aragonitic ascidian exoskeletons from the Permian and Triassic, new discoveries of similar, but colonial ascidian compound endoskeletons in the lower Carnian exhibit a short-living branch of this group, which moreover contain the first indubitable calcareous spi- cules. The latter are embedded in the solid endoskeleton, which is composed of polygonal aragonitic plates with smooth outer and zigzag lined inner boundaries. They consist of irregular, parallel (orthogonal), or fan-shaped (clinogonal) arrangements of acicular aragonite crystals. -
Rapid Progression of Ocean Acidification in the California
Reports With atmospheric CO2 likely to in- crease further, it is important to assess Rapid Progression of Ocean how the California CS will evolve in the future and what levels of ocean Acidification in the California Current acidification it might experience in the coming decades. This is especially relevant since the California CS consti- System tutes one of the most productive eco- systems in the world with a high Nicolas Gruber,1* Claudine Hauri,1 Zouhair Lachkar,1 Damian Loher,1 Thomas L. Frölicher,2 3 biodiversity (14, 15) and important Gian‐Kasper Plattner commercial fisheries (16), yet may be 1Environmental Physics, Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, Zurich, particularly prone to reaching wide- Switzerland. spread undersaturation soon due to its 2AOS Program, Princeton University, Princeton, NJ, USA. low initial pH and Ωarag. Global ocean 3 models have failed so far to recognize Climate and Environmental Physics, University of Bern, Bern, Switzerland. ocean acidification in Eastern Bounda- *To whom correspondence should be addressed. E-mail: [email protected] ry Upwelling Systems (17), since their coarse resolution is insufficient to re- Nearshore waters of the California Current System (California CS) already today solve the local dynamics responsible have a low carbonate saturation state, making them particularly susceptible to for bringing the waters with low pH ocean acidification. Here, we use eddy-resolving model simulations to study the and Ωarag to the surface (9, 18, 19). We potential development of ocean acidification in this system up to 2050 under the overcome this limitation here by using SRES A2 and B1 scenarios.