Sesquiterpene Α-Farnesene Synthase: Partial Purification, Characterization, and Activity in Relation to Superficial Scald Development in Apples
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Functional Characterisation of New Sesquiterpene Synthase from the Malaysian Herbal Plant, Polygonum Minus
molecules Article Functional Characterisation of New Sesquiterpene Synthase from the Malaysian Herbal Plant, Polygonum Minus Nor Azizun Rusdi 1,2, Hoe-Han Goh 1 ID , Suriana Sabri 3,4 ID , Ahmad Bazli Ramzi 1, Normah Mohd Noor 1 and Syarul Nataqain Baharum 1,* ID 1 Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, Bangi 43600 UKM, Selangor, Malaysia; [email protected] (N.A.R.); [email protected] (H-H.G.); [email protected] (A.B.R.); [email protected] (N.M.N.) 2 Institutes for Tropical Biology and Conservation, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia 3 Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia; [email protected] 4 Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, UPM Serdang 43400, Malaysia * Correspondence: [email protected]; Tel.: +603-892-145-50; Fax: +603-892-133-98 Received: 23 March 2018; Accepted: 31 May 2018; Published: 4 June 2018 Abstract: Polygonum minus (syn. Persicaria minor) is a herbal plant that is well known for producing sesquiterpenes, which contribute to its flavour and fragrance. This study describes the cloning and functional characterisation of PmSTPS1 and PmSTPS2, two sesquiterpene synthase genes that were identified from P. minus transcriptome data mining. The full-length sequences of the PmSTPS1 and PmSTPS2 genes were expressed in the E. coli pQE-2 expression vector. The sizes of PmSTPS1 and PmSTPS2 were 1098 bp and 1967 bp, respectively,with open reading frames (ORF) of 1047 and 1695 bp and encoding polypeptides of 348 and 564 amino acids, respectively. -
Fermentation Strategies for Production of Pharmaceutical Terpenoids in Engineered Yeast
pharmaceuticals Review Fermentation Strategies for Production of Pharmaceutical Terpenoids in Engineered Yeast Erdem Carsanba 1,2, Manuela Pintado 2 and Carla Oliveira 2,* 1 Amyris BioProducts Portugal, Unipessoal, Lda. Rua Diogo Botelho 1327, 4169-005 Porto, Portugal; [email protected] 2 CBQF—Centro de Biotecnologia e Química Fina—Laboratório Associado, Universidade Católica Portuguesa, Escola Superior de Biotecnologia, Rua Diogo Botelho 1327, 4169-005 Porto, Portugal; [email protected] * Correspondence: [email protected] Abstract: Terpenoids, also known as isoprenoids, are a broad and diverse class of plant natural prod- ucts with significant industrial and pharmaceutical importance. Many of these natural products have antitumor, anti-inflammatory, antibacterial, antiviral, and antimalarial effects, support transdermal absorption, prevent and treat cardiovascular diseases, and have hypoglycemic activities. Produc- tion of these compounds are generally carried out through extraction from their natural sources or chemical synthesis. However, these processes are generally unsustainable, produce low yield, and result in wasting of substantial resources, most of them limited. Microbial production of terpenoids provides a sustainable and environment-friendly alternative. In recent years, the yeast Saccharomyces cerevisiae has become a suitable cell factory for industrial terpenoid biosynthesis due to developments in omics studies (genomics, transcriptomics, metabolomics, proteomics), and mathematical modeling. Besides that, fermentation -
BIOCHEMICAL and MOLECULAFL CHARACTEIUZATION of A-FARNESENE BIOSYNTHESIS in RELATION to SUPERFICIAL SCALD
BIOCHEMICAL AND MOLECULAFL CHARACTEIUZATION OF a-FARNESENE BIOSYNTHESIS IN RELATION TO SUPERFICIAL SCALD DEVELOPMENT IN APPLE (Malus x domestka Borkh.) A Thesis Presented to The Faculty of Graduate Studies of The University of Guelph by H. P. VASANTHA RUPASINGHE In partial fulfilment of requirements for the degree of Doctor of Philosophy January, 200 1 " H.P.V. Rupasinghe, 200 1 National Library Bibliothèque nationale IM of canada du Canada Acquisitions and Acquisitions et 8ibliographic Services services bibliographiques 395 Wellington Street 345. nie Wellington Ottawa ON K1A ON4 Ottawa ON K1A ON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence allowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distribute or sen reproduire, prêter, distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/nlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fiom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. ABSTRACT BIOCHEMICAL AND MOLECULAR CHGIRACTERIZATION OF a-FARNESENEBIOSYNTHESIS IN RELATION TO SUPERFICLAL SCALD DEVELOPMENT IN APPLE (Malus x domestica Borkh.) H.P. Vasantha Rupasinghe Advisors: University of Guelph, 200 1 Dr. Demis P. Murr Dr. -
[Alpha] Farnesene
Copyright is owned by the Author of the thesis. Permission is given for a copy to be downloaded by an individual for the purpose of research and private study only. The thesis may not be reproduced elsewhere without the permission of the Author. i THE OXIDATION OF a-FARNESENE A thesis presentedin partial fulfilmentof therequirements for thedegree of DOCTOR OFPHILOS OPHY IN CHEMISTRY at Massey University JulieAnn Spicer December 1994 n ACKNOWLEDGEMENTS First and foremost, I would like to thank my supervisors; MargaretBrimble, for her Dr. expertise and enthusiasm, Daryl Rowan, for his wealth of ideas and encouragement, Dr� and Professor Andrew Brodie, both for taking me on at what was a difficult stage and his help in subsequent months. Thanks to Dr. John Shaw and Peter Reay of the Horticulture and Food Research Dr. Institute, for providing the funding.which enabled this work to be carried out and to the staffof the institute who carried out the apple work; also to Mr. Simon Fielder who has always been extremely helpful, both with ideas and material, especially when I was just gettingstarted. 3 Thanks must also go to Mr. John Hastie for the lH and 1 C nmr work, Dr. Ken Jolley for help with some of the 2-D and HerbertWong of Industrial Research Limited nmr Dr. for the 19F nmr. Mass spectral analysis was carried out by Mr. John Alien and Mr. MartinHunt of HortResearch. I would also like to thank my good friend Michael Edmonds for his support and encouragement when things got difficult; life would have been much tougher without him.Lastly, I would like to thank my parents for helping me to believe that if I tried hard enough, I could achieve anything that I set my mind to. -
Supplementary Table 1. Chemical Compounds Isolated from Cnidium Monnieri (L.) Cusson
Supplementary Table 1. Chemical compounds isolated from Cnidium monnieri (L.) Cusson Pubchem ID or chemspider ID Extraction methods, refere Name nces, voucher number s or specimens Coumarins 2’-Acetylangelicin PubChem SID: 52466591 Extraction method: CEC R eference: [1] Bergapten PubChem CID: 2355 Imperatorin PubChem CID: 10212 Osthole PubChem CID: 10228 Isoimperatorin PubChem CID: 68081 Extraction method: HPLC Reference: [2] Isopimpinellin PubChem CID: 68079 Xanthotoxin PubChem CID: 4114 Columbianetin PubChem CID: 92201 Extraction method: GC-MS Reference: [3] Isoporalen PubChem CID: 10658 (with voucher specimen) Synonyms: Angelicin Fraxetin PubChem CID: 5273569 Extraction method: UHPLC -ESI-Q-TOF-MS 6,7,8-Trimethoxycoumarin PubChem CID: 3083928 Reference: [4] Murrayacarpin A ChemSpider ID: 901688 Limettin PubChem CID: 2775 Scoparone PubChem CID: 8417 Isofraxidin PubChem CID: 5318565 7-Methoxy-8-formylcoumarin PubChem SID: 272958589 2’-Deoxymeranzin hydrate PubChem CID: 10659145 Oxypeucedanin hydrate PubChem CID: 17536 Peroxymurraol No results on PubChem but chem ical structure presented in pr evious review Peroxyauraptenol No results on PubChem but chem ical structure presented in pr evious review Auraptenol PubChem CID: 13343541 Micromarin-F PubChem CID: 10730037 Demethyl-auraptenol No results on PubChem but chem ical structure presented in pr evious review Albiflorin-3 PubChem SID: 274183832 Osthenol PubChem CID: 5320318 7-Demethylsuberosin PubChem CID: 5316525 Cnidilin PubChem CID: 821449 Angenomalin PubChem CID: 51520704 Meranzin -
Engineering Yeast Metabolism for Production of Sesquiterpenes
THESIS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY Engineering Yeast Metabolism for Production of Sesquiterpenes STEFAN TIPPMANN Department of Biology and Biological Engineering CHALMERS UNIVERSITY OF TECHNOLOGY Gothenburg, Sweden 2016 Engineering Yeast Metabolism for Production of Sesquiterpenes Stefan Tippmann ISBN 978-91-7597-459-0 © STEFAN TIPPMANN, 2016. Doktorsavhandlingarnar vid Chalmers Tekniska Högskola Ny serie nr 4140 ISSN 0346-718X Department of Biology and Biological Engineering Chalmers University of Technology SE-412 96 Gothenburg, Sweden Telephone +46 (0)31 772 1000 The cover illustrates production of sesquiterpenes by fermentation of the yeast Saccharomyces cerevisiae. Printed by Chalmers Reproservice Gothenburg, Sweden 2016 Engineering Yeast Metabolism for Production of Sesquiterpenes Stefan Tippmann Department of Biology and Biological Engineering Chalmers University of Technology Abstract Sesquiterpenes belong to the large and diverse group of isoprenoids, which are ubiq- uitous in the plant kingdom and have various applications in the chemical indus- try as fragrances, pharmaceuticals and as substitutes for petroleum-based gasoline, diesel and jet fuels. In this project, production of sesquiterpenes was studied in Sac- charomyces cerevisiae using farnesene as an example with the objective to gain new insights into the synthesis of these compounds and to evaluate different metabolic engineering strategies. Farnesyl diphosphate (FPP) represents the universal precursor for all sesquiter- penes and different strategies were addressed to increase production of this interme- diate and to allow for its efficient conversion to farnesene. As FPP is provided by the mevalonate pathway, we aimed at increasing the flux through the pathway by incor- poration of malonyl-CoA using a recently identified acetoacetyl-CoA synthase from Streptomyces sp.