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Relatives of Temperate Fruits) of the Book Series, "Wild Crop Relatives: Genetic, Genomic and Breeding Resources Ed C
Volume 6 (Relatives of Temperate Fruits) of the book series, "Wild Crop Relatives: Genetic, Genomic and Breeding Resources ed C. Kole 2011 p179-197 9 Rubus J. Graham* and M. Woodhead Scottish Crop Research Institute, Dundee, DD2 5DA, UK *Corresponding author: [email protected] Abstract The Rosaceae family consists of around 3, 000 species of which 500 belong to the genus Rubus. Ploidy levels range from diploid to dodecaploid with a genomic number of 7, and members can be difficult to classify into distinct species due to hybridization and apomixes. Species are distributed widely across Asia, Europe, North and South America with the center of diversity now considered to be in China, where there are 250-700 species of Rubus depending on the taxonomists. Rubus species are an important horticultural source of income and labor being produced for the fresh and processing markets for their health benefits. Blackberries and raspberries have a relatively short history of less than a century as cultivated crops that have been enhanced through plant breeding and they are only a few generations removed from their wild progenitor species. Rubus sp. are typically found as early colonizers of disturbed sites such as pastures, along forest edges, in forest clearings and along roadsides. Blackberries are typically much more tolerant of drought, flooding and high temperatures, while red raspberries are more tolerant of cold winters. Additionally, they exhibit vigorous vegetative reproduction by either tip layering or root suckering, permitting Rubus genotypes to cover large areas. The attractiveness of the fruits to frugivores, especially birds, means that seed dispersal can be widespread with the result that Rubus genotypes can very easily be spread to new sites and are very effective, high-speed invaders. -
"National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary."
Intro 1996 National List of Vascular Plant Species That Occur in Wetlands The Fish and Wildlife Service has prepared a National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary (1996 National List). The 1996 National List is a draft revision of the National List of Plant Species That Occur in Wetlands: 1988 National Summary (Reed 1988) (1988 National List). The 1996 National List is provided to encourage additional public review and comments on the draft regional wetland indicator assignments. The 1996 National List reflects a significant amount of new information that has become available since 1988 on the wetland affinity of vascular plants. This new information has resulted from the extensive use of the 1988 National List in the field by individuals involved in wetland and other resource inventories, wetland identification and delineation, and wetland research. Interim Regional Interagency Review Panel (Regional Panel) changes in indicator status as well as additions and deletions to the 1988 National List were documented in Regional supplements. The National List was originally developed as an appendix to the Classification of Wetlands and Deepwater Habitats of the United States (Cowardin et al.1979) to aid in the consistent application of this classification system for wetlands in the field.. The 1996 National List also was developed to aid in determining the presence of hydrophytic vegetation in the Clean Water Act Section 404 wetland regulatory program and in the implementation of the swampbuster provisions of the Food Security Act. While not required by law or regulation, the Fish and Wildlife Service is making the 1996 National List available for review and comment. -
Genetic Diversity in Wild and Cultivated Black Raspberry (Rubus Occidentalis L.) Evaluated by Simple Sequence Repeat Markers
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln U.S. Department of Agriculture: Agricultural Publications from USDA-ARS / UNL Faculty Research Service, Lincoln, Nebraska 2012 Genetic diversity in wild and cultivated black raspberry (Rubus occidentalis L.) evaluated by simple sequence repeat markers Michael Dossett Pacific Agri-Food Research Centre Nahla V. Bassil United States Department of Agriculture Kim S. Lewers United States Department of Agriculture Chad E. Finn United States Department of Agriculture, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usdaarsfacpub Dossett, Michael; Bassil, Nahla V.; Lewers, Kim S.; and Finn, Chad E., "Genetic diversity in wild and cultivated black raspberry (Rubus occidentalis L.) evaluated by simple sequence repeat markers" (2012). Publications from USDA-ARS / UNL Faculty. 1243. https://digitalcommons.unl.edu/usdaarsfacpub/1243 This Article is brought to you for free and open access by the U.S. Department of Agriculture: Agricultural Research Service, Lincoln, Nebraska at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications from USDA-ARS / UNL Faculty by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Genet Resour Crop Evol (2012) 59:1849–1865 DOI 10.1007/s10722-012-9808-8 RESEARCH ARTICLE Genetic diversity in wild and cultivated black raspberry (Rubus occidentalis L.) evaluated by simple sequence repeat markers Michael Dossett • Nahla V. Bassil • Kim S. Lewers • Chad E. Finn Received: 7 September 2011 / Accepted: 15 January 2012 / Published online: 26 February 2012 Ó Springer Science+Business Media Dordrecht (outside the USA) 2012 Abstract Breeding progress in black raspberry (Ru- (SSR), markers are highly polymorphic codominant bus occidentalis L.) has been limited by a lack of markers useful for studying genetic diversity, popula- genetic diversity in elite germplasm. -
Transcriptome Assembly and Expression Analysis in Colletotrichum Gloeosporioides-Tolerant Rubus 7 Glaucus Benth
RESEARCH Transcriptome assembly and expression analysis in Colletotrichum gloeosporioides-tolerant Rubus 7 glaucus Benth. Juliana Arias1, Juan C. Rincón1*, Ana M. López1, and Marta L. Marulanda1 1Universidad Tecnológica de Pereira, Grupo de Investigación en Biodiversidad y Biotecnología, Carrera 27 No. 10-02 Pereira, Risaralda, Colombia. *Corresponding author ([email protected]). Received: 9 April 2019; Accepted: 30 July 2019; doi:10.4067/S0718-58392019000400565 ABSTRACT Andean blackberry (Rubus glaucus Benth.) is an important crop of the Andean region affected by Colletotrichum gloeosporioides. In Colombia, tolerant plant material has been detected, but it has not been completely characterized. The objective of this research was oriented to analyze de novo transcriptome assembly of R. glaucus, and the comparison of the assembly with different reference genomes to further complete differential expression analysis of R. glaucus tolerant to C. gloespoiorides attack. To achieve this, three groups were used: infected tolerant material, infected susceptible material, and a susceptible group without inoculation. The RNA-seq sequencing was achieved through Illumina Hi-seq 2000. De novo assembly (Trinity, CD-HIT, TopHat) and functional annotation of sequences were carried out, additionally, mapping with reference genomes belonging to Rosaceae families was conducted (Bowtie2, TopHat). Subsequently, the differential expression was quantified (Cuffdiff) and analyzed through EdgeR. Variant analysis was made using MISA and SAMtools. After editing and assembly, 43579 consensus sequences were obtained (N50 = 489 bp; GC = 44.6%), annotation detected 35824 and 35602 sequences in Nt (partially non-redundant nucleotide sequences) and Nr (non-redundant protein sequences) databases, respectively. The 85% of Nr sequences was linked to members of Rosaceae family, mainly strawberry (67.6%). -
Appendix 2: Plant Lists
Appendix 2: Plant Lists Master List and Section Lists Mahlon Dickerson Reservation Botanical Survey and Stewardship Assessment Wild Ridge Plants, LLC 2015 2015 MASTER PLANT LIST MAHLON DICKERSON RESERVATION SCIENTIFIC NAME NATIVENESS S-RANK CC PLANT HABIT # OF SECTIONS Acalypha rhomboidea Native 1 Forb 9 Acer palmatum Invasive 0 Tree 1 Acer pensylvanicum Native 7 Tree 2 Acer platanoides Invasive 0 Tree 4 Acer rubrum Native 3 Tree 27 Acer saccharum Native 5 Tree 24 Achillea millefolium Native 0 Forb 18 Acorus calamus Alien 0 Forb 1 Actaea pachypoda Native 5 Forb 10 Adiantum pedatum Native 7 Fern 7 Ageratina altissima v. altissima Native 3 Forb 23 Agrimonia gryposepala Native 4 Forb 4 Agrostis canina Alien 0 Graminoid 2 Agrostis gigantea Alien 0 Graminoid 8 Agrostis hyemalis Native 2 Graminoid 3 Agrostis perennans Native 5 Graminoid 18 Agrostis stolonifera Invasive 0 Graminoid 3 Ailanthus altissima Invasive 0 Tree 8 Ajuga reptans Invasive 0 Forb 3 Alisma subcordatum Native 3 Forb 3 Alliaria petiolata Invasive 0 Forb 17 Allium tricoccum Native 8 Forb 3 Allium vineale Alien 0 Forb 2 Alnus incana ssp rugosa Native 6 Shrub 5 Alnus serrulata Native 4 Shrub 3 Ambrosia artemisiifolia Native 0 Forb 14 Amelanchier arborea Native 7 Tree 26 Amphicarpaea bracteata Native 4 Vine, herbaceous 18 2015 MASTER PLANT LIST MAHLON DICKERSON RESERVATION SCIENTIFIC NAME NATIVENESS S-RANK CC PLANT HABIT # OF SECTIONS Anagallis arvensis Alien 0 Forb 4 Anaphalis margaritacea Native 2 Forb 3 Andropogon gerardii Native 4 Graminoid 1 Andropogon virginicus Native 2 Graminoid 1 Anemone americana Native 9 Forb 6 Anemone quinquefolia Native 7 Forb 13 Anemone virginiana Native 4 Forb 5 Antennaria neglecta Native 2 Forb 2 Antennaria neodioica ssp. -
Rubus Pharmacology: Antiquity to the Present Kim E
Rubus Pharmacology: Antiquity to the Present Kim E. Hummer U.S. Department of Agriculture, Agricultural Research Service, National Clonal Germplasm Repository, 33447 Peoria Road, Corvallis, OR 97333 Additional index words. ancient and traditional, medicine, blackberries, raspberries, Rubus Abstract. The genus Rubus L., indigenous to six continents, includes blackberries, raspberries, and their hybrids and is commonly referred to as brambles or briers. Rubus species were a food and medicinal source for native peoples soon after the Ice Age. This short article presents only a sample of the wealth of historical reports of medicinal uses for Rubus. Brambles were documented in the writings of the ancient Greeks: Aeschylus, Hippocrates, Krataeus, Dioscorides, and Galen; Romans: Cato, Ovid, and Pliny the Elder; Asian medicinal traditions; traditional Chinese medicine; and the Ayurvedic tradition of India. Folk traditions of native peoples throughout the world have also applied Rubus for multiple medicinal uses. Although in modern times Rubus is grown for its delicious and vitamin-rich fruit for fresh and processed product consumption, the ancients used the whole plant and its parts. Stems, branches, roots, leaves, and flowers were used in decoctions, infusions, plasters, oil or wine extractions, and condensates. Decoctions of branches were applied to stop diarrhea, dye hair, prevent vaginal discharge, and as an antivenom for snakebites. Leaves were chewed to strengthen gums and plastered to constrain shingles, head scurf, prolapsed eyes, and hemorrhoids. Flowers triturated with oil reduced eye inflammations and cooled skin rashes; infusions with water or wine aided stomach ailments. Greeks and Romans recorded female applications, whereas the Chinese described uses in male disorders. -
We Hope You Find This Field Guide a Useful Tool in Identifying Native Shrubs in Southwestern Oregon
We hope you find this field guide a useful tool in identifying native shrubs in southwestern Oregon. 2 This guide was conceived by the “Shrub Club:” Jan Walker, Jack Walker, Kathie Miller, Howard Wagner and Don Billings, Josephine County Small Woodlands Association, Max Bennett, OSU Extension Service, and Brad Carlson, Middle Rogue Watershed Council. Photos: Text: Jan Walker Max Bennett Max Bennett Jan Walker Financial support for this guide was contributed by: • Josephine County Small • Silver Springs Nursery Woodlands Association • Illinois Valley Soil & Water • Middle Rogue Watershed Council Conservation District • Althouse Nursery • OSU Extension Service • Plant Oregon • Forest Farm Nursery Acknowledgements Helpful technical reviews were provided by Chris Pearce and Molly Sullivan, The Nature Conservancy; Bev Moore, Middle Rogue Watershed Council; Kristi Mergenthaler and Rachel Showalter, Bureau of Land Management. The format of the guide was inspired by the OSU Extension Service publication Trees to Know in Oregon by E.C. Jensen and C.R. Ross. Illustrations of plant parts on pages 6-7 are from Trees to Know in Oregon (used by permission). All errors and omissions are the responsibility of the authors. Book formatted & designed by: Flying Toad Graphics, Grants Pass, Oregon, 2007 3 Table of Contents Introduction ................................................................................ 4 Plant parts ................................................................................... 6 How to use the dichotomous keys ........................................... -
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Rubus strigosus Michx. Common Names: American red raspberry (1), wild red raspberry (6), grayleaf red raspberry (2). Etymology: “Rubus” is the latin word for blackberry/raspberry and “strigosus” is the latin word for thin (5). Botanical synonyms: Rubus idaeus L. ssp. strigosus (Michx.) Focke, Rubus melanolasius Dieck, Rubus neglectus Peck, Rubus carolinianus Rydb (2). FAMILY: Rosaceae, the Rose family (1) Quick Notable Features: ¬ Glandular-bristly stems ¬ Pinnately compound leaves with 3- 5 serrated leaflets, abaxially glaucous ¬ Perfect, white flowers with the sepals longer than the petals ¬ Red aggregate of drupelets that separates from the receptacle Plant Height: Rubus strigosus can reach up to 2m (7). Subspecies/varieties recognized (source 1,13): R. strigosus var. aberratus, R. strigosus var. acalyphaceus, R. strigosus var. albus, R. strigosus var. arizonicus, R. strigosus var. caudatus, R. strigosus var. eucyclus, R. strigosus var. heterolasius, R. strigosus var. strigosus, R. strigosus var. tonsus. Most Likely Confused with: Other members of the genus Rubus, such as Rubus occidentalis, Rubus idaeus, and Rubus neglectus. Rosa englanteria and Rosa setigera may also be similar in appearance (8,9). Habitat PreFerence: Rubus strigosus grows in open or disturbed areas with well drained soil (7,8). Geographic Distribution in Michigan: Rubus strigosus is found in most counties of the Upper and Lower Peninsulas (2). Known Elevational Distribution: R. strigosus was found at Mount Mitchell State Park (NC), at an elevation of 2,037m (12). Complete Geographic Distribution: R. strigosus is native to North America and widely distributed on the United States (AK, AZ, CA, CO, CT, DE, IA, ID, IL, IN, MA, MD, ME, MI, MN, MO, MT, NC, ND, NE, NH, NJ, NM, NV, NY, OH, OK, OR, PA, RI, SD, TN, UT, VA, VT, WA, WI, WV, WY), Canada (AB, BC, LB, MB, NB, NF, NS, NT, NU, ON, PE, QC, SK, YT), and France (St. -
2002 Black Raspberry (Rubus Occidentalis) Cultivar Study
Black Raspberry Cultivar Study Page 1 of 3 Black Raspberry ( Rubus occidentalis ) Cultivar Study (Shawn R. Wright, Christie Welch, Lynn Miller and Richard C. Funt) Introduction Two varieties of black raspberry are commonly grown in Southern Ohio. Bristol {1934, NYFTA, Geneva, NY. (Watson Prolific x Honeysweet)}produces a fruit that is medium-large, firm, with good flavor and glossy skin. It is a good yielder and mildew tolerant, but susceptible to anthracnose. Jewel {1973, NYFTA, Geneva, NY. [(Bristol x Dundee) x Dundee]} produces fruit that are also large, firm, with good flavor and glossy skin. The plant is vigorous, erect, resistant to anthracnose, and widely adapted. The fruit ripens after Bristol, though both varieties are considered early season ripening in mid-June in Southern Ohio. Mac Black is another variety that growers have expressed an interest in because it will allow them to extend their picking season for approximately 10 days beyond what is possible with the early varieties. This study was planted to determine the relative yield and harvest season of Mac Black relative to Bristol and Jewel. Growers often wonder if it is advantageous to harvest the “baby crop” the second year from planting or if the it is better to allow the plants to establish themselves and begin harvesting the third year. We can’t say what the effect will be on the long-term health of the planting, but the following information on production should be useful. Methods Experimental design: Randomized Complete Block on raised beds NORTH Guard Row Guard Row 6 plants/plot Jewel Mac Black Mac Black Bristol Mac Black Bristol 30 inch spacing 15 foot plots Jewel Jewel Bristol Mac Black Jewel Bristol 12 foot centers 3 feet between plots Jewel Bristol Jewel Jewel Bristol Bristol Tissue cultured Bristol, Jewel, and Mac Black raspberries ( Rubus occidentalis L.) obtained from Nourse Farm ⊗ were planted at the Ohio State University South Centers (Piketon, OH) on June 15, 2001. -
Helianthus Hirsutus Raf
Helianthus hirsutus Raf. whiskeredwhiskered sunflower sunflower, Page State Distribution Merel Black- Univ. Wisc. Stevens Point Best Survey Period Jan Feb Mar Apr May Jun Jul Aug Sept Oct Nov Dec Status: State special concern State distribution: Currently, the Michigan distribution as shown via the heritage database is problematical, Global and state rank: G5/S3 owing to the fact that this easily overlooked species has not been verified in many localities via the Other common names: hairy sunflower, stiff-hair collection of voucher specimens. Several reported sunflower records include field surveys by subsequent surveyors that suspect misidentification of the more commonH. Family: Asteraceae (aster family); also known as the divaricatus (woodland sunflower), thus these localities Composite are suspicious and require further investigation, including the acquisition of vouchers. It also appears Synonyms: Helianthus hirsutus var. stenophyllus that some sites based on putative specimens have now Torrey & A. Gray; H. hirsutus var. trachyphyllus Torrey been determined to be invalid. Voss (996) indicates & A. Gray; H. stenophyllus (Torrey & A. Gray) E. the distribution as consisting of Wayne, Washtenaw, Watson; H. leptocaulis (S. Watson) S. F. Blake (Flora of Lenawee, and Menominee counties, which is the North America 2006). distribution depicted here. Taxonomy: A detailed infrageneric classification Recognition: Helianthus hirsutus is a perennial, of Helianthus was proposed by Schilling and leafy-stemmed forb arising from long rhizomes, Heiser (98); however, the reader is referred to the ranging up to 2 m in height. The finely hairy stems contemporary treatment of the Asteraceae in the Flora of bear opposite, ascending, lanceolate (lance-shaped) North America (2006). -
Forest Service Research Natural Areas
1.Adorni 1.Adorni (Cheng 1997a, Sawyer 1981a) Location This established RNA is on the Six Rivers National Forest. It lies about 3 miles (5 km) N. of Weitchpec, Humboldt County, covering portions of sects. 25 and 26 T10N, R4E HBM (41°14'N., 123°41'W.), USGS Weitchpec quad (fig. 3). Ecological subsections – Gasquet Mountain Ultramafics (M261Ab) and Eastern Franciscan (M261Ba). Target Element Port Orford-Cedar (Chamaecyparis lawsoniana) Distinctive Features Port Orford-Cedar (POC): This species is restricted to the Klamath Mountains and the adjacent S. Oregon Coast Figure 3—Adorni RNA Ranges. Throughout much of its range it is threatened by root rot disease (Phytophthora lateralis), and suitable areas for protection are needed. The area is representative of the low-elevation, mesic portion of the W. Klamath Mountains. In comparison with Upper Goose Creek (#91), however, it is less mesic, and such species as Rhododendron macrophyllum, western hemlock (Tsuga heterophylla), and giant chinquapin (Chrysolepis chrysophylla) are rare or absent. POC is more widespread in the forest away from drainage bottoms than at Upper Goose Creek. In comparison to Cedar Basin (#15), L.E. Horton (#50), and Rock Creek Butte (#70) candidate RNAs, Adorni is a warmer, less montane environment largely without ultramafic substrate. POC in Adorni is less restricted to stream courses than those in Cedar Basin, L.E. Horton, and Rock Creek Butte. Rare Plants: Erythronium citrinum and Lilium rubescens are members of CNPS List 4 species. Large Tanoak (Lithocarpus densiflorus): A small area in the SW. part of the site has several exceptionally large specimens of tanoak. -
Native Crop Wild Relatives of the United States Related to Food Crops Crop Taxon Comments Sugar Maple Acer Saccharum Subsp
1/12/2015 Native Crop Wild Relatives of the United States Related to Food Crops Crop Taxon Comments Sugar Maple Acer saccharum subsp. floridanum (Chapm.) Desmarais Sugar Maple Acer saccharum subsp. leucoderme (Small) Desmarais Sugar Maple Acer saccharum subsp. nigrum (F. Michx.) Desmarais Sugar Maple Acer saccharum subsp. ozarkense A. E. Murray Sugar Maple Acer saccharum subsp. saccharum Onion Allium schoenoprasum subsp. schoenoprasum Onion Allium tricoccum Aiton Amaranth Amaranthus ×tucsonensis Henrickson Amaranth Amaranthus acanthochiton J. D. Sauer Amaranth Amaranthus arenicola I. M. Johnst. Amaranth Amaranthus australis (A. Gray) J. D. Sauer Amaranth Amaranthus brownii Christoph. & Caum Amaranth Amaranthus californicus (Moq.) S. Watson Amaranth Amaranthus cannabinus (L.) J. D. Sauer Amaranth Amaranthus crassipes Schltdl. Amaranth Amaranthus fimbriatus (Torr.) Benth. ex S. Watson Amaranth Amaranthus floridanus (S. Watson) J. D. Sauer Amaranth Amaranthus greggii S. Watson Amaranth Amaranthus polygonoides L. Amaranth Amaranthus powellii subsp. powellii Amaranth Amaranthus pumilus Raf. Amaranth Amaranthus tamaulipensis Henrickson Amaranth Amaranthus torreyi (A. Gray) Benth. ex S. Watson Amaranth Amaranthus tuberculatus (Moq.) J. D. Sauer Amaranth Amaranthus watsonii Standl. Amaranth Amaranthus wrightii S. Watson Potato bean Apios americana Medik. Potato bean Apios priceana B. L. Rob. Pawpaw Asimina ×nashii Kral Pawpaw Asimina incana (W. Bartram) Exell Pawpaw Asimina longifolia Kral Pawpaw Asimina obovata (Willd.) Nash Pawpaw Asimina parviflora (Michx.) Dunal Pawpaw Asimina pygmaea (W. Bartram) Dunal Pawpaw Asimina reticulata Shuttlew. ex Chapm. Pawpaw Asimina tetramera Small Pawpaw Asimina triloba (L.) Dunal Pepper Capsicum annuum var. glabriusculum (Dunal) Heiser & Pickersgill Pecan/Hickory Carya ×brownii Sarg. Pecan/Hickory Carya ×lecontei Little Pecan/Hickory Carya ×ludoviciana (Ashe) Little Page | 1 1/12/2015 Crop Taxon Comments Pecan/Hickory Carya aquatica (F.