Redalyc.SUPPRESSION of DROSOPHILA ANANASSAE FLIES
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Advances in Genetics, Development, and Evolution of Drosophila
springer.com Seppo Lakovaara (Hrsg.) Advances in Genetics, Development, and Evolution of Drosophila In 1906 Castle, Carpenter, Clarke, Mast, and Barrows published a paper entitled "The effects of inbreeding, cross-breeding, and selection upon the fertility and variability of Drosophila." This article, 55 pages long and published in the Proceedings of the Amer• ican Academy, described experiments performed with Drosophila ampe• lophila Lov, "a small dipterous insect known under various popular names such as the little fruit fly, pomace fly, vinegar fly, wine fly, and pickled fruit fly." This study, which was begun in 1901 and published in 1906, was the first published experimental study using Drosophila, subsequently known as Drosophila melanogaster Meigen. Of course, Drosophila was known before the experiments of Cas• tles's group. The small flies swarming around grapes and wine pots have surely been known as long Softcover reprint of the original 1st ed. as wine has been produced. The honor of what was the first known misclassification of the 1982, X, 474 p. fruit flies goes to Fabricius who named them Musca funebris in 1787. It was the Swedish dipterist, C.F. Fallen, who in 1823 changed the name of ~ funebris to Drosophila funebris Gedrucktes Buch which was heralding the beginning of the genus Drosophila. Present-day Drosophila research Softcover was started just 80 years ago and first published only 75 years ago. Even though the history 119,99 € | £109.99 | $149.99 of Drosophila research is short, the impact and volume of study on Drosophila has been [1]128,39 € (D) | 131,99 € (A) | CHF tremendous during the last decades. -
Assessment of Drosophila Diversity During Monsoon Season
Journal of Entomology and Nematology Vol.3(4), pp. 54-57, April 2011 Available online at http://www.academicjournals.org/jen ISSN 2006- 9855 ©2011 Academic Journals Full Length Research Paper Assessment of Drosophila diversity during monsoon season Guruprasad B. R.*, Pankaj Patak and Hegde S. N. Kannada Bharthi College, Kushalnagar, Madikari. Atreya Ayruvedic Medical College, Bangalore Department of Zoology and Genetics, University of Mysore, Mysore, India. Accepted 19 April 2011 Two months survey was conducted to analyze the altitudinal variation in diversity of Drosophila in Chamundi hill of Mysore, Karnataka state, India. Drosophila flies belonging to 15 species were collected from 680, 780, 880 and 980 m altitudes. The species diversity according to the biodiversity indices was very high in 680 m compare to other higher altitudes. Key words : Drosophila, Simpson, Berger-Parker indices. INTRODUCTION Drosophila is being extensively used in biological the collection was done in the Chamundi hill during 2008-2009. research, particularly for genetical, cellular, molecular, Chamundi hill is a famous tourist spot with altitude 1100 m, 6 km developmental and population studies. It has been used from the Mysore city. Karnataka, India, The altitude of the hill from the foot (base) is 580 m, the temperature ranges from 17 to 35°C as model organism for research for almost a century. It and relative humidity varies from 19 to 75%. The collections of flies has richly contributed to our understanding of pattern of were made during monsoon season (June and July once in 15 days inheritance, variation, mutation and speciation. Studies of the months). For this method, flies were collected by using have also been made on the population genetics of sweeping and bottle trapping method from the all altitude, such as different species of this genus. -
OPTIMIZATION of FRUIT FLY (Drosophila Melanogaster) CULTURE MEDIA for HIGHER YIELD of OFFSPRING
OPTIMIZATION OF FRUIT FLY (Drosophila melanogaster) CULTURE MEDIA FOR HIGHER YIELD OF OFFSPRING By TEE SUI YEE A project report submitted to the Department of Biological Science Faculty of Science Universiti Tunku Abdul Rahman in partial fulfillment of the requirements for the degree of Bachelor of Science (Hons) Biotechnology May 2010 ABSTRACT OPTIMIZATION OF FRUIT FLY (Drosophila melanogaster) CULTURE MEDIA FOR HIGHER YIELD OF OFFSPRING Tee Sui Yee Drosophila melanogaster is one of the most widely used model organism in research on genetics and genome evolution. Mass culture of D. melanogaster is important to produce enough amounts of flies for research purposes. Various culture media have been formulated using simple and economic methods to produce large amounts of Drosophila. In this study, ten different culture media were formulated to culture inbred D. melanogaster and used as attractant to collect Kampar wild-type Drosophila species. Banana medium was used as the positive control medium and plain agar was used as the negative control medium. For inbred D. melanogaster, the number of pupal cases and hatched flies were calculated for two generations while only the number of pupal cases was calculated for wild-caught Drosophila species. The results were analyzed by using one-way ANOVA, Tukey’s HSD multiple range test and paired sample t- test. One-way ANOVA showed that there were significant differences (p≤ 0.05) in the numbers of inbred offspring and also the numbers of wild-caught Drosophila species among different culture media. For inbred D. melanogaster, the banana and egg medium managed to breed the highest number of offspring for both generations. -
Transcriptome Analysis Reveals Candidate Genes for Cold Tolerance in Drosophila Ananassae
G C A T T A C G G C A T genes Article Transcriptome Analysis Reveals Candidate Genes for Cold Tolerance in Drosophila ananassae Annabella Königer and Sonja Grath * Division of Evolutionary Biology, Faculty of Biology, LMU Munich, Grosshaderner Str. 2, 82152 Planegg-Martinsried, Germany; [email protected] * Correspondence: [email protected]; Tel.: +49-(0)89/2180-74110 Received: 27 September 2018; Accepted: 3 December 2018; Published: 12 December 2018 Abstract: Coping with daily and seasonal temperature fluctuations is a key adaptive process for species to colonize temperate regions all over the globe. Over the past 18,000 years, the tropical species Drosophila ananassae expanded its home range from tropical regions in Southeast Asia to more temperate regions. Phenotypic assays of chill coma recovery time (CCRT) together with previously published population genetic data suggest that only a small number of genes underlie improved cold hardiness in the cold-adapted populations. We used high-throughput RNA sequencing to analyze differential gene expression before and after exposure to a cold shock in cold-tolerant lines (those with fast chill coma recovery, CCR) and cold-sensitive lines (slow CCR) from a population originating from Bangkok, Thailand (the ancestral species range). We identified two candidate genes with a significant interaction between cold tolerance and cold shock treatment: GF14647 and GF15058. Further, our data suggest that selection for increased cold tolerance did not operate through the increased activity of heat shock proteins, but more likely through the stabilization of the actin cytoskeleton and a delayed onset of apoptosis. Keywords: chill coma recovery time; cold tolerance; adaptation; Drosophila ananassae; RNA sequencing; heat shock proteins; actin polymerization; apoptosis 1. -
Extensive Morphological Divergence and Rapid Evolution of the Larval Neuromuscular Junction in Drosophila
Extensive morphological divergence and rapid evolution of the larval neuromuscular junction in Drosophila Megan Campbella and Barry Ganetzkyb,1 aNeuroscience Training Program and bLaboratory of Genetics, University of Wisconsin, Madison, WI 53706 Contributed by Barry Ganetzky, January 20, 2012 (sent for review November 17, 2011) Although the complexity and circuitry of nervous systems undergo the evolution of synaptic morphology by analyzing NMJ pheno- evolutionary change, we lack understanding of the general types in different species of Drosophila. The overall body plan, principles and specific mechanisms through which it occurs. The musculature, and motor innervation pattern are precisely con- Drosophila larval neuromuscular junction (NMJ), which has been served among all species of Drosophila and are even shared with widely used for studies of synaptic development and function, is more distantly related groups of Diptera (3), despite enormous also an excellent system for studies of synaptic evolution because differences in size, habitat, food source, predation, and other the genus spans >40 Myr of evolution and the same identified aspects of their natural history and concomitant differences in synapse can be examined across the entire phylogeny. We have behavior. Moreover, the subgenus Drosophila by itself encom- now characterized morphology of the NMJ on muscle 4 (NMJ4) in passes at least 40 Myr of evolutionary history (4). The conserva- > Drosophila 20 species of . Although there is little variation within tion of body plan and muscle innervation over the evolutionary a species, NMJ morphology and complexity vary extensively be- history of Drosophila immediately raises the question of whether tween species. We find no significant correlation between NMJ NMJ morphology is also conserved or has undergone modifica- phenotypes and phylogeny for the species examined, suggesting tion in different species. -
Names Are Key to the Big New Biology Patterson, D. J.1, Cooper, J.2, Kirk
Names are key to the big new biology Patterson, D. J.1, Cooper, J.2, Kirk, P. M.3 , Pyle, R. L.4, Remsen, D. P.5 1. Biodiversity Informatics, Marine Biological Laboratory, Woods Hole, Massachusetts 02543, USA. [email protected] 2. Landcare Research, PO Box 40, Lincoln 7640, New Zealand. [email protected] 3. CABI UK, Bakeham Lane, Egham, Surrey, TW20 9TY, United Kingdom. [email protected] 4. Department of Natural Sciences, Bishop Museum, 1525 Bernice St., Honolulu, Hawaii 96817, USA. [email protected] 5. GBIF, Universitetsparken 15, Copenhagen Ø, DK 2100, Denmark. [email protected]. Abstract Those who seek answers to big, broad questions about biology, especially questions emphasizing the organism (taxonomy, evolution, ecology), will soon benefit from an emerging names-based infrastructure. It will draw on the almost universal association of organism names with biological information to index and interconnect information distributed across the Internet. The result will be a virtual data commons, expanding as further data are shared, allowing biology to become more of a “big science”. Informatics devices will exploit this ‘big new biology’, revitalizing comparative biology with a broad perspective to reveal previously inaccessible trends and discontinuities, so helping us to reveal unfamiliar biological truths. Here, we review the first components of this freely available, participatory, and semantic Global Names Architecture. Patterson Cooper Kirk Pyle Remsen: Names are key to the big new biology 1 The value of taxonomy to a biology that is changing “New Biology” is a vision [1] of a discipline evolving to become considerably more data- intensive as it accommodates increasing amounts of under-analysed data from high-throughput molecular and environmental technologies, and from large-scale digitization programs such as the Biodiversity Heritage Library (BHL, http://www.biodiversitylibrary.org/). -
Efficient Subtraction of Insect Rrna Prior to Transcriptome Analysis Of
Kumar et al. BMC Research Notes 2012, 5:230 http://www.biomedcentral.com/1756-0500/5/230 TECHNICAL NOTE Open Access Efficient subtraction of insect rRNA prior to transcriptome analysis of Wolbachia-Drosophila lateral gene transfer Nikhil Kumar1, Todd Creasy1, Yezhou Sun1, Melissa Flowers1, Luke J Tallon1 and Julie C Dunning Hotopp1,2* Abstract Background: Numerous methods exist for enriching bacterial or mammalian mRNA prior to transcriptome experiments. Yet there persists a need for methods to enrich for mRNA in non-mammalian animal systems. For example, insects contain many important and interesting obligate intracellular bacteria, including endosymbionts and vector-borne pathogens. Such obligate intracellular bacteria are difficult to study by traditional methods. Therefore, genomics has greatly increased our understanding of these bacteria. Efficient subtraction methods are needed for removing both bacteria and insect rRNA in these systems to enable transcriptome-based studies. Findings: A method is described that efficiently removes >95% of insect rRNA from total RNA samples, as determined by microfluidics and transcriptome sequencing. This subtraction yielded a 6.2-fold increase in mRNA abundance. Such a host rRNA-depletion strategy, in combination with bacterial rRNA depletion, is necessary to analyze transcription of obligate intracellular bacteria. Here, transcripts were identified that arise from a lateral gene transfer of an entire Wolbachia bacterial genome into a Drosophila ananassae chromosome. In this case, an rRNA depletion strategy is preferred over polyA-based enrichment since transcripts arising from bacteria-to-animal lateral gene transfer may not be poly-adenylated. Conclusions: This enrichment method yields a significant increase in mRNA abundance when poly-A selection is not suitable. -
Kosuda, K. Viability of Drosophila Melanogaster Female Flies Carrying
Dros. Inf. Serv. 97 (2014) Research Notes 67 Figure 1e. Acknowledgment: We are thankful to UGC (University Grants Commission), New Delhi, for providing financial support in the form of major research project to AKS and research fellowship to SK. References: Arthur, A.L., A.R. Weeks, and C.M. Sgro 2008, J. Evol. Biol. 21: 1470–1479; Ayala, F.J., J.R. Powell, M.L. Tracey, C.A. Mourao, and S. Perez-Salas 1972, Genetics 70: 113-139; Bock, I.R., and M.R. Wheeler 1972, In: The Drosophila melanogaster species group. Univ. Texas Pub. 7213: 1-102; Bubliy, O.A., A.G. Imasheva, and O.E. Lazebnyi 1994, Genetika 30: 467-477; Bubliy, O.A., B.A. Kalabushkin, and A.G. Imasheva 1999, Hereditas 130: 25–32; Cavener, D.R., and M.T. Clegg 1981, Genetics 98: 613–623; Hoffmann, A.A., and A. Weeks 2007, Genetica 129: 133–147; Krishnamoorti, K., and A.K. Singh 2013, Dros. Inf. Serv. 96: 54-55; Kumar, S., and A.K. Singh 2012, Dros. Inf. Serv. 95: 18-20; Kumar, S., and A.K. Singh 2013, Dros. Inf. Serv. 96: 52-54; Kumar, S., and A.K. Singh 2014, Genetika 46: 227-234; Lakovaara, S., and A. Saura 1971, Genetics 69: 377-384; Land, V.T., J. Van Putten, W.F.H. Villarroel, A. Kamping, and W.V. Delden 2000, Evolution 54: 201–209; Moraes, E.M., and F.M. Sene 2002, J. Zool. Syst. Evol. Res. 40: 123–128; Mulley, J.C., J.W. James, and J.S.F. Barker 1979, Biochemical Genetics 17: 105–126; Oakeshott, J.G., J.B. -
Protection of Biodiversity in the Risk Management
TEXTE 76 /2015 Protection of Biodiversity in the Risk Assessment and Risk Management of Pesticides (Plant Protection Products & Biocides) with a Focus on Arthropods, Soil Organisms and Amphibians TEXTE 76/2015 Environmental Research of the Federal Ministry for the Environment, Nature Conservation, Building and Nuclear Safety Project No. (FKZ) 3709 65 421 Report No. (UBA-FB) 002175/E Protection of Biodiversity in the Risk Assessment and Risk Management of Pesticides (Plant Protection Products & Biocides) with a Focus on Arthropods, Soil Organisms and Amphibians by Carsten A. Brühl, Annika Alscher, Melanie Hahn Institut für Umweltwissenschaften , Universität Koblenz-Landau, Landau, Germany Gert Berger, Claudia Bethwell, Frieder Graef Leibniz-Zentrum für Agrarlandschaftsforschung (ZALF) e.V., Müncheberg, Germany Thomas Schmidt, Brigitte Weber Harlan Laboratories, Ittingen, Switzerland On behalf of the Federal Environment Agency (Germany) Imprint Publisher: Umweltbundesamt Wörlitzer Platz 1 06844 Dessau-Roßlau Tel: +49 340-2103-0 Fax: +49 340-2103-2285 [email protected] Internet: www.umweltbundesamt.de /umweltbundesamt.de /umweltbundesamt Study performed by: Institut für Umweltwissenschaften, Universität Koblenz-Landau Fortstr. 7 76829 Landau, Germany Study completed in: August 2013 Edited by: Section IV 1.3 Plant Protection Products Dr. Silvia Pieper Publication as pdf: http://www.umweltbundesamt.de/publikationen/protection-of-biodiversity-in-the-risk-assessment ISSN 1862-4804 Dessau-Roßlau, September 2015 The Project underlying this report was supported with funding from the Federal Ministry for the Environment, Nature Conservation, Building and Nuclear safety under project number FKZ 3709 65 421. The responsibility for the content of this publication lies with the author(s). Table of Contents Table of Contents 1. -
Advances in Genetics, Development, and Evolution of Drosophila
springer.com Biomedicine : Human Genetics Lakovaara, Seppo (Ed.) Advances in Genetics, Development, and Evolution of Drosophila In 1906 Castle, Carpenter, Clarke, Mast, and Barrows published a paper entitled "The effects of inbreeding, cross-breeding, and selection upon the fertility and variability of Drosophila." This article, 55 pages long and published in the Proceedings of the Amer• ican Academy, described experiments performed with Drosophila ampe• lophila Lov, "a small dipterous insect known under various popular names such as the little fruit fly, pomace fly, vinegar fly, wine fly, and pickled fruit fly." This study, which was begun in 1901 and published in 1906, was the first published experimental study using Drosophila, subsequently known as Drosophila Springer melanogaster Meigen. Of course, Drosophila was known before the experiments of Cas• tles's Softcover reprint of the group. The small flies swarming around grapes and wine pots have surely been known as long 1st original 1st ed. 1982, X, 474 edition as wine has been produced. The honor of what was the first known misclassification of the p. fruit flies goes to Fabricius who named them Musca funebris in 1787. It was the Swedish dipterist, C.F. Fallen, who in 1823 changed the name of ~ funebris to Drosophila funebris which was heralding the beginning of the genus Drosophila. Present-day Drosophila research Printed book was started just 80 years ago and first published only 75 years ago. Even though the history Softcover of Drosophila research is short, the impact and volume of study on Drosophila has been Printed book tremendous during the last decades. -
New Species in the Drosophila Ananassae Subgroup from Northern Australia, New Guinea and the South Pacific (Diptera: Drosophilidae), with Historical Overview
© The Authors, 2015. Journal compilation © Australian Museum, Sydney, 2015 Records of the Australian Museum (2015) Vol. 67, issue number 5, pp. 129–161. ISSN 0067-1975 (print), ISSN 2201-4349 (online) http://dx.doi.org/10.3853/j.2201-4349.67.2015.1651 New Species in the Drosophila ananassae Subgroup from Northern Australia, New Guinea and the South Pacific (Diptera: Drosophilidae), with Historical Overview SHANE F. MCEVEY* AND MICHELE SCHIffER1 Australian Museum Research Institute, 6 College Street, Sydney NSW 2000, Australia 1 School of Biosciences, University of Melbourne, Parkville Victoria 3010, Australia [email protected] ABSTRACT. Three new Drosophila species are described in the ananassae subgroup from Australia, New Guinea and Samoa. Drosophila pandora sp.nov. and D. anomalata sp.nov. are morphologically very similar to the circumtropical species D. ananassae and are classified together in theananassae complex. For 40 years D. pandora has been incorrectly identified as D. ananassae in the Australian tropics. The results of a detailed examination of the morphology of 1649 wild-caught ananassae-like male specimens, sampled from 60 islands from Southeast Asia to French Polynesia and 94 localities of northern Australia and western, central and eastern New Guinea, are reported. Comparisons are made with Afrotropical and Oriental samples to confirm the identity ofD. ananassae s.str. Photomicrographs of the male terminalia and sex combs of D. ananassae and D. pandora from geographically distant localities demonstrate the stability of the important diagnostic characters. Males of D. anomalata, known only from three localities in Queensland, Australia, have a unique bobbing behaviour when courting, and they have the lowest total number of teeth in the sex combs. -
The Molecular Basis of Cold Tolerance in Drosophila Ananassae
The molecular basis of cold tolerance in Drosophila ananassae Annabella Koniger¨ Munchen¨ 2019 The molecular basis of cold tolerance in Drosophila ananassae Annabella Koniger¨ Dissertation an der Fakultat¨ fur¨ Biologie der Ludwig–Maximilians–Universitat¨ Munchen¨ vorgelegt von Annabella Koniger¨ aus Augsburg Munchen,¨ den 28.03.2019 Erkl¨arung Diese Dissertation wurde im Sinne von §12 der Promotionsordnung von Dr. Sonja Grath betreut. Ich erklare¨ hiermit, dass die Dissertation nicht einer anderen Prufungskommis-¨ sion vorgelegt worden ist und dass ich mich nicht anderweitig einer Doktorprufung¨ unterzogen habe. Ich versichere hiermit an Eides statt, dass die vorgelegte Dissertation von mir selbst- standig¨ und ohne unerlaubte Hilfe angefertigt worden ist. Im Abschnitt Note“ ist mein ” Anteil an der Arbeit im Einzelnen dargelegt. Munchen,¨ den 16.03.2019 Annabella Koniger¨ Datum, Ort Unterschrift Erstgutachter: Dr. Sonja Grath Zweitgutachter: Prof. Dr. Dirk Metzler Tag der Abgabe: 28.03.2019 Tag der mundlichen¨ Prufung:¨ 03.09.2019 Contents Note x Abstract xii Zusammenfassung xiv List of Abbreviations xvi List of Figures xviii List of Tables xx 1 Introduction 1 1.1 Drosophila ananassae: genetic features and demographic history . .2 1.2 Quantifying cold tolerance with chill coma recovery time . .4 1.3 Local adaptation to cold in Drosophila ananassae: previous work and ra- tionale . .6 1.4 From phenotype to genotype . .7 1.5 From genotype to phenotype . 11 1.6 Aims and objectives . 14 2 Material and Methods 16 2.1 Fly strains and fly maintenance . 16 2.2 Tests for chill coma recovery time . 16 2.3 Transcriptome analysis . 18 2.3.1 RNA-extraction and sequencing .