Recent Advances in the Catalytic Asymmetric Reactions of Oxaziridines
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– with Novozymes Enzymes for Biocatalysis
Biocatalysis Pregabalin case study Smarter chemical synthesis – with Novozymes enzymes for biocatalysis The new biocatalytic route results in process improvements, reduced organic solvent usage and substantial reduction of waste streams in Pregabalin production. Introduction Biocatalysis is the application of enzymes to replace chemical Using Lipolase®, a commercially available lipase, rac-2- catalysts in synthetic processes. In recent past, the use of carboxyethyl-3-cyano-5-methylhexanoic acid ethyl ester biocatalysis has gained momentum in the chemical and (1) can be resolved to form (S)-2-carboxyethyl-3-cyano-5- pharmaceutical industries. Today, it’s an important tool for methylhexanoic acid (2). Compared to the first-generation medicinal, process and polymer chemists to develop efficient process, this new route substantially improves process and highly attractive organic synthetic processes on an efficiency by setting the stereocenter early in the synthesis and industrial scale. enabling the facile racemization and reuse of (R)-1. The biocatalytic process for Pregabalin has been developed It outperforms the first-generation manufacturing process also by Pfizer to boost efficiency in Pregabalin production using by delivering higher yields of Pregabalin and by resulting in Novozymes Lipolase®. substantial reductions of waste streams, corresponding to a 5-fold decrease in the E-Factor from 86 to 17. Development of the biocatalytic process for Pregabalin involves four stages: • Screening to identify a suitable enzyme • Performing optimization of the enzymatic reaction to optimize throughput and reduce enzyme loading • Exploring a chemical pathway to preserve the enantiopurity of the material already obtained and lead to Pregabalin, and • Developing a procedure for the racemization of (R)-1 Process improvements thanks to the biocatalytic route Pregabalin chemical synthesis H Knovenagel CN condensation cyanation KOH 0 Et02C CO2Et Et02C CO2Et Et02C CO2Et CNDE (1) CN NH2 1. -
A Reminder… Chirality: a Type of Stereoisomerism
A Reminder… Same molecular formula, isomers but not identical. constitutional isomers stereoisomers Different in the way their Same connectivity, but different atoms are connected. spatial arrangement. and trans-2-butene cis-2-butene are stereoisomers. Chirality: A Type of Stereoisomerism Any object that cannot be superimposed on its mirror image is chiral. Any object that can be superimposed on its mirror image is achiral. Chirality: A Type of Stereoisomerism Molecules can also be chiral or achiral. How do we know which? Example #1: Is this molecule chiral? 1. If a molecule can be superimposed on its mirror image, it is achiral. achiral. Mirror Plane of Symmetry = Achiral Example #1: Is this molecule chiral? 2. If you can find a mirror plane of symmetry in the molecule, in any achiral. conformation, it is achiral. Can subject unstable conformations to this test. ≡ achiral. Finding Chirality in Molecules Example #2: Is this molecule chiral? 1. If a molecule cannot be superimposed on its mirror image, it is chiral. chiral. The mirror image of a chiral molecule is called its enantiomer. Finding Chirality in Molecules Example #2: Is this molecule chiral? 2. If you cannot find a mirror plane of symmetry in the molecule, in any conformation, it is chiral. chiral. (Or maybe you haven’t looked hard enough.) Pharmacology of Enantiomers (+)-esomeprazole (-)-esomeprazole proton pump inhibitor inactive Prilosec: Mixture of both enantiomers. Patent to AstraZeneca expired 2002. Nexium: (+) enantiomer only. Process patent coverage to 2007. More examples at http://z.umn.edu/2301drugs. (+)-ibuprofen (-)-ibuprofen (+)-carvone (-)-carvone analgesic inactive (but is converted to spearmint oil caraway oil + enantiomer by an enzyme) Each enantiomer is recognized Advil (Wyeth) is a mixture of both enantiomers. -
Chapter 4: Stereochemistry Introduction to Stereochemistry
Chapter 4: Stereochemistry Introduction To Stereochemistry Consider two of the compounds we produced while finding all the isomers of C7H16: CH3 CH3 2-methylhexane 3-methylhexane Me Me Me C Me H Bu Bu Me Me 2-methylhexane H H mirror Me rotate Bu Me H 2-methylhexame is superimposable with its mirror image Introduction To Stereochemistry Consider two of the compounds we produced while finding all the isomers of C7H16: CH3 CH3 2-methylhexane 3-methylhexane H C Et Et Me Pr Pr 3-methylhexane Me Me H H mirror Et rotate H Me Pr 2-methylhexame is superimposable with its mirror image Introduction To Stereochemistry Consider two of the compounds we produced while finding all the isomers of C7H16: CH3 CH3 2-methylhexane 3-methylhexane .Compounds that are not superimposable with their mirror image are called chiral (in Greek, chiral means "handed") 3-methylhexane is a chiral molecule. .Compounds that are superimposable with their mirror image are called achiral. 2-methylhexane is an achiral molecule. .An atom (usually carbon) with 4 different substituents is called a stereogenic center or stereocenter. Enantiomers Et Et Pr Pr Me CH3 Me H H 3-methylhexane mirror enantiomers Et Et Pr Pr Me Me Me H H Me H H Two compounds that are non-superimposable mirror images (the two "hands") are called enantiomers. Introduction To Stereochemistry Structural (constitutional) Isomers - Compounds of the same molecular formula with different connectivity (structure, constitution) 2-methylpentane 3-methylpentane Conformational Isomers - Compounds of the same structure that differ in rotation around one or more single bonds Me Me H H H Me H H H H Me H Configurational Isomers or Stereoisomers - Compounds of the same structure that differ in one or more aspects of stereochemistry (how groups are oriented in space - enantiomers or diastereomers) We need a a way to describe the stereochemistry! Me H H Me 3-methylhexane 3-methylhexane The CIP System Revisited 1. -
Highly Efficient Camphor-Derived Oxaziridines for the Asymmetric
Highly Efficient Camphor-Derived Oxaziridines for the Asymmetric Oxidation of Sulfides to Chiral Sulfoxides Vassilios Meladinis, Uwe Verfürth, and Rudolf Herrmann* Organisch-Chemisches Institut der Technischen Universität München, Lichtenbergstraße 4, D-8046 Garching, Bundesrepublik Deutschland Dedicated to Prof. Dr. Ivar Ugi on the occasion o f his 60th birthday Z. Naturforsch. 45b, 1689- 1694 (1990); received May 18, 1990 Asymmetric Oxidation, N-Sulfonyl-oxaziridines, Chiral Sulfoxides, Camphorsulfonic Acid Chiral N-sulfonyl-oxaziridines derived from 8 -camphorsulfonic acid and fenchone have been evaluated as asymmetric oxidizing agents for the conversion of sulfides to chiral sulf oxides. There is no correlation between the redox potentials nor the lvO NMR chemical shifts of the oxaziridines and their relative oxidation rates, nor with the enantiomeric excesses achieved, indicating that steric effects are responsible for their behaviour. The results are con sistent with an attack of one sulfur lone pair at the oxaziridine oxygen in such a way that both sulfur lone pairs lie in the plane of the oxaziridine ring. The most efficient oxaziridines, the camphorlactone-sulfonyloxaziridine [(4aS,9aR)-10,10-dimethyl-6,7-dihydro-4H-4a,7-meth- ano-oxazirino[3,2-j]oxepino[3,4-c]isothiazol-9(5 H)-one 3,3-dioxide] and the 3-endo-bromo- camphorsulfonyloxaziridine [(4aS,8 S ,8 aR)-8-bromo-9,9-dimethyl-5,6,7,8-tetrahydro-4 H- 4a,7-methano-oxazirino-2,l-benzisothiazole 3,3-dioxide] allow the preparation of chiral sul foxides with up to 85% enantiomeric excess. Introduction crowded oxaziridines activated by an electron- Chiral sulfoxides play a prominent role among withdrawing sulfonyl group at nitrogen give the the chiral auxiliaries used for the synthesis of enan- best results. -
Synthesis of New Camphor-Based Auxiliaries
UNIVERSITY OF HAWAllllB~ PART 1: SYNTHESIS OF NEW CAMPHOR-BASED AUXILIARIES PART 2: ISOMERIZATION / CYCLIZATION OF ACETYLENIC KETONES TO CYCLOPENTENONES A THESIS SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAI'I IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN CHEMISTRY MAY 2003 By Jeremy S. Forest Thesis Committee: Marcus A. Tius, Chairperson Thomas K. Hemscheidt Craig M. Jensen ACKNOWLEDGEMENTS I would first like to give my sincere thanks to my advisor, Dr. Marcus A. Tius. His endless guidance and support inside the laboratory are lessons that I will carry along forever in my journey through life. I would also like to thank the members of my dissertation committee for their time and effort. I would like to extend a special thanks to Dr. Thomas Hemscheidt for his tireless efforts in the review of this thesis. Many thanks go to Wesley Yoshida and Mike Burger for their help in obtaining NMR and mass spectra. I would also like to thank the members of the Tius group, especially Brad Tokeshi, Cisco Bee, Frank Cordaro, and Eric LeClerc, for their endless help and companionship during my time here. Once again, I would like to thank Dr. Marcus A. Tius for his generous financial support in the form of a research assistantship. I cannot take full credit for this work without recognizing my parents, Bill and Felicia. Their unconditional love and support has kept me going in everything that I do. Finally, I have to thank the fellas: Dave, Scott, Nick, Mitch, and brother Josh. They always believed in me and encouraged me to work through the good and the bad. -
Amino Acid Catalyzed Direct Asymmetric Mannich Type Reactions Employing Unmodified Donors: Structure Based Catalyst Screening for Anti/Syn Selectivity
Asian Journal of Chemistry Vol. 20, No. 7 (2008), 5203-5208 Amino Acid Catalyzed Direct Asymmetric Mannich Type Reactions Employing Unmodified Donors: Structure Based Catalyst Screening for Anti/syn Selectivity SUBHENDU DAS and RAJESH K. SINGH* Department of Chemistry, North Orissa University, Takatpur, Baripada-757 003, India E-mail: [email protected] Amino acid catalyzed direct Mannich-type additions to N-Tos protected α-imino ethyl glyoxylate employing unmodi- fied carbonyl donors is described. The reaction was performed in DMSO using a catalytic amount (30 mol %) of L-proline and its derivatives providing a facile route to functionalized β-keto substituted α-amino acid derivatives with excellent diastereo- and enantioselectivities. Unmodified 3-pentanone and cyclohexanone were used as donors for the one pot gener- ation of two quaternary stereocenter. Organocatalysis using L-proline and 5,5-dimethyl thiazolidinium-4-carboxylate were typically syn-diastereoselective. Anti-diastereoselectivity was achieved using (S)-2-methoxymethyl-pyrrolidine and L-proline benzyl ester. Stereochemical outcomes are explained on the basis of previously proposed transition state and the reasons governing syn- and anti-selectivity are described. Poor selectivity of (S)-2-methoxy-methylpyrrolidine compared to L-proline benzyl ester in contrast to earlier reports are expla- ined in terms of a fast cis-trans event and possible sterics. Key Words: Amino acids, Mannich reaction, Anti/syn Selectivity. INTRODUCTION Stereoselective transformation employing asymmetric organocatalysis is a rapidly growing field1-3. Reactions utilizing proline as chiral enantio- selective organocatalyst in catalytic amount has been the focus of great interest recently4,5. Organocatalytic reactions of proline and its derivatives has been well demonstrated for its versatility and potential to create both functional and structural diversity6. -
Progress Toward the Total Synthesis of Terpenoid Natural Products: the Neomangicols and the Yohimbine Alkaloids
Progress Toward the Total Synthesis of Terpenoid Natural Products: the Neomangicols and the Yohimbine Alkaloids By Jessica Louise Wood A dissertation in submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Chemistry in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Richmond Sarpong, Chair Professor F. Dean Toste Professor Leonard Bjeldanes Fall 2011 Abstract Progress Toward the Total Synthesis of Terpenoid Natural Products: the Neomangicols and the Yohimbine Alkaloids by Jessica Louise Wood Doctor of Philosophy in Chemistry University of California, Berkeley Professor Richmond Sarpong, Chair Progress has been made toward the total synthesis of a diverse array of natural products. Chapter 1 begins by introducing the isolation, bioactivity, and biosynthesis of the neomangicol and mangicol sesterterpenoids. Subsequent to that introduction, a summary of previous synthetic approaches to these natural products is presented. In the third section, our synthetic approaches are detailed, beginning with a first generation synthesis of the ABD tricycle, followed by a description of our revised route to the neomangicol tetracyclic core and our work toward the rearrangement of that core to the mangicol spirocyclic core. This chapter concludes with a summary of our accomplishments in this natural product area and outlines several strategies to achieve the desired rearrangement. The last section also includes our initial studies into the formation of the mangicol core. Preliminary work toward the synthesis of the ABD tricycle was performed by Dr. Brian Pujanauski. Chapter 2 details our work in the area of the yohimbine alkaloids. It begins with an introduction to these pentacyclic indole-containing natural products, discussing their isolation, proposed biosynthesis and giving a brief overview of the rich bioactivity that has been ascertained for these molecules. -
A Publication of Reliable Methods for the Preparation of Organic Compounds
A Publication of Reliable Methods for the Preparation of Organic Compounds Working with Hazardous Chemicals The procedures in Organic Syntheses are intended for use only by persons with proper training in experimental organic chemistry. All hazardous materials should be handled using the standard procedures for work with chemicals described in references such as "Prudent Practices in the Laboratory" (The National Academies Press, Washington, D.C., 2011; the full text can be accessed free of charge at http://www.nap.edu/catalog.php?record_id=12654). All chemical waste should be disposed of in accordance with local regulations. For general guidelines for the management of chemical waste, see Chapter 8 of Prudent Practices. In some articles in Organic Syntheses, chemical-specific hazards are highlighted in red “Caution Notes” within a procedure. It is important to recognize that the absence of a caution note does not imply that no significant hazards are associated with the chemicals involved in that procedure. Prior to performing a reaction, a thorough risk assessment should be carried out that includes a review of the potential hazards associated with each chemical and experimental operation on the scale that is planned for the procedure. Guidelines for carrying out a risk assessment and for analyzing the hazards associated with chemicals can be found in Chapter 4 of Prudent Practices. The procedures described in Organic Syntheses are provided as published and are conducted at one's own risk. Organic Syntheses, Inc., its Editors, and its Board of Directors do not warrant or guarantee the safety of individuals using these procedures and hereby disclaim any liability for any injuries or damages claimed to have resulted from or related in any way to the procedures herein. -
Dioxiranes: Synthesis and Reactions of Methyldioxiranes
J. Org. Chem. 1985,50, 2847-2853 2847 30 min at -15 "C, about 60% of the SO2 was removed. The liquid that at 5.54 to collapse to a 4.5 Hz d. Anal. Calcd for was stirred into diethyl ether, the ether was decanted, and acetone C14H17N3011S2:C, 35.97; H, 3.67; N, 8.99. Found: C, 36.24; H, was added to yield upon filtration 29 g (85%) of 15. 3.54; N, 8.96. Preparation of 15 in CH2C12. To 70 g of CH2C12and 20 g 1-(2-Thienyl)tetrahydrothiopheniumPicrate (17). To 75 (0.23 mol) of THT at -30 "C was added 14 g (0.40 mol) of chlorine g of SO2 and 16 g (0.18 mol) of THT at -30 "C was added 21.7 followed by addition of 18.1 g (0.17 mol) of styrene. After 30 min, g (0.16 mol) of S02C12followed by 13.96 g (0.16 mol) of thiophene. the solution was stirred into ether, the ether was decanted, and After 30 min at -5 "C 30 mL of H20 was added and the SO2 was acetone was added to give 4.2 g (9.2%) of 15: 60-MHz 'H NMR removed. After extraction twice with both chloroform and hex- (D20)6 7.5 (5 H, b, phenyl), 5.48 [l H, t, J = 7 Hz, C(2) HI, 3.96 anol, the material was converted to the picrate by the usual [2 H, AB of ABX, J(AB) = 13 Hz, C(1) H2], 3.4 (4 H, m, width manner to give 9.3 g (14.6%) of 17: 100-MHz 'H NMR 20 Hz, THT+ a H), 2.14 (4 H, m, width 14 Hz, THT' /3 H); (Me2SO-d6)6 8.61 (2 H, s, picrate), 8.22 [lH, dd, J = 5.1 Hz, J' 60-MHz 'H NMR (CF,COOH) 6 7.5 (5 H, b, phenyl), 5.45 (1 H, = 1.4 Hz, C(5) HI, 8.00, [l H, dd, J = 3.8 Hz, J'= 1.4 Hz, C(3) t, J = 7 Hz), 3.85 (2 H, t, J = 7 Hz), 3.55 (4 H, m, width 25 Hz), HI, 7.34 [l H, dd, J = 5.1 Hz, J'= 3.8 Hz, C(4) HI, 3.88 (4 H, 2.36 (4 H, m, width 15 Hz). -
Recent Advances in Biocatalyst Development in the Pharmaceutical Industry
Pharmaceutical Review Pharm. Bioprocess. (2013) 1(2), 179–196 Recent advances in biocatalyst development in the pharmaceutical industry Biocatalysts are increasingly employed as more efficient and environmentally safer Mingzi M Zhang†1, Xiaoyun alternatives to traditional chemical catalysts in the manufacturing of fine chemicals. Su†1, Ee Lui Ang1 & This is driven by advances in recombinant DNA technology, protein engineering and Huimin Zhao*1,2 bioinformatics, all of which are critical in the discovery, tailoring and optimization of 1Metabolic Engineering Research enzymes for industrial processes. In this article we review these key technological in- Laboratory, Institute of Chemical & Engineering Sciences, Agency for novations, as well as highlight the strategic application of these tools in the develop- Science, Technology & Research, ment of biocatalysts in the production of advanced pharmaceutical intermediates. Singapore 2Departments of Chemical & Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA The synthesis of pharmaceutical products covery and development for pharmaceutical *Author for correspondence: and therapeutic agents using biological sys- processes. For a comprehensive summary of Tel. : +1 217 333 2631 tems is becoming increasingly important for recent examples of biocatalyst application E-mail: zhao5@illinois. edu the healthcare industry. Integral to pharma- in the pharmaceutical industry, readers can †Authors contributed equally ceutical bioprocessing is the development refer -
Is Life Based on Chirality of Pentavalent Elements Possible? Resolution of Stable Isomers, Enantiomers and Diastereomers of Pentavalent Nitrogen
Voice of the Publisher, 2021, 7, 44-55 https://www.scirp.org/journal/vp ISSN Online: 2380-7598 ISSN Print: 2380-7571 Is Life Based on Chirality of Pentavalent Elements Possible? Resolution of Stable Isomers, Enantiomers and Diastereomers of Pentavalent Nitrogen Ilia Brondz Norwegian Drug Control and Drug Discovery Institute (NDCDDI) AS, Ski, Norway How to cite this paper: Brondz, I. (2021). Abstract Is Life Based on Chirality of Pentavalent Elements Possible? Resolution of Stable V-valent elements such as nitrogen, phosphorus, sulfur, and several others Isomers, Enantiomers and Diastereomers fulfill requirements for chirality. In the system on Earth, and with the present of Pentavalent Nitrogen. Voice of the Pub- thermodynamic conditions—pressure, temperature, radiation, and oth- lisher, 7, 44-55. https://doi.org/10.4236/vp.2021.71004 ers—the carbon atom’s chirality is the primary factor in the creation of living creatures. However, even in our galaxy and surely elsewhere in the universe, Received: November 26, 2020 there are places with very different temperatures, pressure, radiation and Accepted: March 13, 2021 other conditions for life that differ from our model. Life on Earth in its Published: March 16, 2021 present forms would not be imaginable if the average temperature was above Copyright © 2021 by author(s) and 60˚C because of instability in DNA, RNA, and protein molecules at such a Scientific Research Publishing Inc. temperature. Humankind is stuck in the doctrine that life must look like the This work is licensed under the Creative model we are familiar with or be similar. However, other elements with the Commons Attribution International License (CC BY 4.0). -
Diastereomer
Diastereomer Diastereomers (sometimes called diastereoisomers) are a type of a stereoisomer.[1] Diastereomers are Diastereomers that are also epimers defined as non-mirror image non-identical stereoisomers. Hence, they occur when two or more stereoisomers of a compound have different configurations at one or more (but not all) of the equivalent (related) stereocenters and are not mirror images of each other.[2] When two diastereoisomers differ from each other at only one stereocenter they are epimers. Each stereocenter gives rise to two different configurations and thus typically increases the number of stereoisomers by a factor of two. Diastereomers differ from enantiomers in that the latter are pairs of stereoisomers that differ in all stereocenters and are therefore mirror images of one another.[3] Enantiomers of a compound with more than one stereocenter are also diastereomers of the other stereoisomers of that compound that are not their D-Threose D-Erythrose mirror image (that is, excluding the opposing enantiomer). Diastereomers have different physical properties (unlike most aspects of enantiomers) and often different chemical reactivity. Diastereomerism can also occur at a double bond, where the cis vs trans relative positions of substituents give two non-superposable isomers. Many conformational isomers are diastereomers as well. Diastereoselectivity is the preference for the formation of one or more than one diastereomer over the other in an organic reaction. Contents Syn / anti Erythro / threo Multiple stereocenters Applications See also References Syn / anti When the single bond between the two centres is free to rotate, cis/trans descriptors become invalid. Two widely accepted prefixes used to distinguish diastereomers on sp³-hybridised bonds in an open-chain molecule are syn and anti.