Volatile Fatty Acids Effects on Nitrite Removal and Nitrate Formation During Activated Sludge Treatment

Total Page:16

File Type:pdf, Size:1020Kb

Volatile Fatty Acids Effects on Nitrite Removal and Nitrate Formation During Activated Sludge Treatment University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 8-2004 Volatile Fatty Acids Effects on Nitrite Removal and Nitrate Formation during Activated Sludge Treatment Merve Oguz University of Tennessee - Knoxville Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Part of the Civil and Environmental Engineering Commons Recommended Citation Oguz, Merve, "Volatile Fatty Acids Effects on Nitrite Removal and Nitrate Formation during Activated Sludge Treatment. " PhD diss., University of Tennessee, 2004. https://trace.tennessee.edu/utk_graddiss/2341 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Merve Oguz entitled "Volatile Fatty Acids Effects on Nitrite Removal and Nitrate Formation during Activated Sludge Treatment." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Doctor of Philosophy, with a major in Civil Engineering. Kevin G. Robinson, Major Professor We have read this dissertation and recommend its acceptance: Alice C. Layton, Gary S. Sayler, Gregory Reed, Paul Frymier Accepted for the Council: Carolyn R. Hodges Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) To the Graduate Council: I am submitting herewith a dissertation written by Merve Oguz entitled “Volatile Fatty Acids Effects on Nitrite Removal and Nitrate Formation during Activated Sludge Treatment.” I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Doctor of Philosophy, with a major in Civil Engineering. Kevin G. Robinson Major Professor We have read this dissertation and recommend its acceptance: Alice C. Layton Gary S. Sayler Gregory Reed Paul Frymier Acceptance for the Council: Anne Mayhew Vice Chancellor and Dean of Graduate Studies (Original signatures on file with official student records.) VOLATILE FATTY ACID EFFECTS ON NITRITE REMOVAL AND NITRATE FORMATION DURING ACTIVATED SLUDGE TREATMENT A Dissertation Presented for the Doctor of Philosophy Degree The University of Tennessee, Knoxville Merve Oguz August 2004 DEDICATION This dissertation is dedicated to my beautiful daughter ZEYNEP and my baby son EDIZ ii ACKNOWLEDGMENTS I would like to state my deep gratitude to my major professor, Dr. Kevin Robinson, for his support and guidance throughout this project. I wish to express my sincere appreciation to Dr. Alice Layton for her generous guidance and encouragement. I am thankful to Dr. Gary Sayler for his help and financial support for this study. Special thanks are also extended to other committee members, Dr. Gregory Reed and Dr. Paul Frymier for their advice and comments during this research. I would also like to thank Shawn Hawkins for being my friend and helping in the laboratory when I needed. I am indebted to the members of Center for Environmental Biotechnology. Special thanks go to Dr. John Sanseverino, Dr. Fu-Min Menn, James Easter and Victoria Garrett for their help with laboratory techniques. I would also like to acknowledge Dr. Robert Compton, Dr. Steven Hagan and Jeff Steill from Chemistry Department for their help with nitrous oxide analysis. I am very thankful to Turkish Ministry of Education for giving me this opportunity and supporting me financially. My sincere thanks are extended to my parents, Leyla and Aytekin Temizer, for their immeasurable sacrifices, patience, love and support. I would like to thank my husband, Osman Oguz, for his moral support, companionship and love. My 6-year old daughter Zeynep deserves my special appreciation for her love and understanding during this study. iii ABSTRACT Reaction sequences of nitrifying and denitrifying bacteria are widely used to eliminate nitrogenous compounds from wastewater. During nitrification, ammonia is oxidized to nitrite by autotrophic ammonia oxidizing bacteria and nitrite is further oxidized to nitrate by nitrite oxidizers. Subsequently, nitrate or nitrite is reduced by denitrifying bacteria to gaseous nitrogen compounds. It is common knowledge that nitrification is an aerobic process and denitrification an anaerobic process. However, recent research has shown that denitrification can occur under aerobic conditions in pure cultures. Volatile fatty acids (VFAs), produced during anaerobic treatment processes, can affect both nitrite oxidation and aerobic denitrification. VFAs were shown to reduce nitrate formation via nitrite oxidation in activated sludge systems and to stimulate aerobic denitrification in pure cultures. Nitrite removal inhibition by VFAs observed in activated sludge systems may be due to the level of aerobic denitrification which occurs. Investigation of this possibility can provide a new insight for the removal of nitrogen from wastewater and possibly reduce the chemical and energy demand for nitrogen treatment. The overall goal of this research was to demonstrate that nitrification and denitrification could occur in the same reactor under aerobic conditions in the presence of VFAs. The impact of VFAs on nitrite removal and nitrate formation in activated sludge systems was studied in batch and CSTR experiments. The experimental work included measurements of nitrite removal, nitrate formation and CO2 fixation in the absence and presence of VFAs. In addition, molecular tools were applied to examine changes in microbial population density when the population was exposed to VFAs. Production of iv N2O and activity of periplasmic nitrate reductase enzyme (NAP) which catalyses the first step of aerobic denitrification were also analyzed. Nitrite removal and nitrate formation rates were reduced in the presence of VFAs in batch experiments. Nitrate formation rate was reduced to a greater extent (74%) than nitrite removal rate (35%) indicating that products other than nitrate were formed during nitrite oxidation. The addition of VFAs into an activated sludge CSTR treating municipal wastewater resulted in a rapid decrease in nitrate formation rate (> 70% reduction); however, nitrite removal rate was not reduced. No nitrogen was discharged in the effluent of the CSTR indicating that nitrogenous compounds were completely removed from the wastewater. In contrast, VFAs were not found to impact carbon dioxide fixation efficiency in either batch or CSTR experiments although it is generally believed to be limited by the availability of energy derived from nitrite oxidation. Non-inhibitory effect of VFAs on carbon dioxide fixation implied that VFAs disturb nitrite removal and nitrate formation by a different system other than nitrite oxidation. Additionally, the number of nitrite oxidizing bacteria (NOB) remained relatively constant in the presence of VFAs indicating that any reduction observed was not due to a decrease in NOB. N2O gas was produced in the presence of VFAs which was a clear indication that aerobic reduction of nitrite and/or nitrate occurred. It appeared that aerobic denitrification was responsible for the unbalanced nitrification conversions in the presence of VFAs. Also, the activity of NAP enzyme increased when VFAs were present suggesting a significant role of aerobic denitrification during nitrogen conversions. v Table of Contents CHAPTER 1 .......................................................................................................................1 INTRODUCTION .............................................................................................................. 1 1.1 Background............................................................................................................... 1 1.2 Hypothesis and Objectives .................................................................................... 5 CHAPTER 2 .......................................................................................................................8 LITERATURE REVIEW ................................................................................................... 8 2.1 The Activated Sludge Process ................................................................................. 8 2.2 Anaerobic Treatment and VFAs ............................................................................. 10 2.3 Nitrification............................................................................................................. 12 2.3.1 Physiology of Nitrifying Bacteria .................................................................... 13 2.3.2 Biochemistry of Nitrifying Bacteria................................................................. 17 2.3.3 Carbon Metabolism in Nitrifying Bacteria....................................................... 22 2.3.4 Activated Sludge Nitrification ......................................................................... 25 2.4 Denitrification........................................................................................................ 27 2.5 Conceptional Model for Nitrogen Removal Focusing on Nitrite as the Central Compound........................................................................................................................
Recommended publications
  • Multiple Genome Sequences Reveal Adaptations of a Phototrophic Bacterium to Sediment Microenvironments
    Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments Yasuhiro Odaa, Frank W. Larimerb, Patrick S. G. Chainc,d,e, Stephanie Malfattic,d, Maria V. Shinc,d, Lisa M. Vergezc,d, Loren Hauserb, Miriam L. Landb, Stephan Braatschf, J. Thomas Beattyf, Dale A. Pelletierb, Amy L. Schaefera, and Caroline S. Harwooda,1 aDepartment of Microbiology, University of Washington, Seattle, WA 98195; bGenome Analysis and Systems Modeling, Oak Ridge National Laboratory, Oak Ridge, TN 37831; cJoint Genome Institute, Walnut Creek, CA 94598; dLawrence Livermore National Laboratory, Livermore, CA 94550; eDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824; and fDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada Edited by Robert Haselkorn, University of Chicago, Chicago, IL, and approved October 14, 2008 (received for review September 13, 2008) The bacterial genus Rhodopseudomonas is comprised of photo- exist in soils and sediments, but on a microscale that is generally synthetic bacteria found widely distributed in aquatic sediments. too small for human observation. The genus Rhodopseudomonas Members of the genus catalyze hydrogen gas production, carbon consists of photosynthetic Alphaproteobacteria of extreme met- dioxide sequestration, and biomass turnover. The genome se- abolic versatility. Members of the genus are ubiquitous in quence of Rhodopseudomonas palustris CGA009 revealed a sur- temperate aquatic sediments (7–9), and isolates classified as prising richness of metabolic versatility that would seem to explain Rhodopseudomonas spp. can grow with or without light or its ability to live in a heterogeneous environment like sediment. oxygen, fix nitrogen, and have highly developed biodegradation However, there is considerable genotypic diversity among Rhodo- abilities.
    [Show full text]
  • Close Similarity to Functionally Unrelated Mitochondrial Cytochrome C (Photosynthetic Bacteria/Amino-Acid Sequence/Molecular Evolution) RICHARD P
    Proc. Nat. Acad. Sci. USA Vol. 73, No. 2, pp. 472-475, February 1976 Biochemistry Primary structure determination of two cytochromes c2: Close similarity to functionally unrelated mitochondrial cytochrome c (photosynthetic bacteria/amino-acid sequence/molecular evolution) RICHARD P. AMBLER*, TERRANCE E. MEYERt, AND MARTIN D. KAMENt § * Department of Molecular Biology, University of Edinburgh, Edinburgh EH9 3JR, Scotland; tDepartment of Chemistry, University of California, San Diego, La Jolla, Calif. 92093; and *Chemical-Biological Development Laboratory, University of Southern Cai ornia, Los Angeles, Calif. 90007 Contributed by Martin D. Kamen, December 12,1975 ABSTRACT The amino-acid sequences of the cyto- We have been studying the amino-acid sequences of the chromes c2 from the photosynthetic non-sulfur purple bacte- Rhodospirillaceae cytochromes c2 and find that they can be ria Rhodomicrobium vannielii and- Rhiodopseudomonas viri- divided at present into at least two groups on the basis of the dis have been determined. Only a single residue deletion (at position 11 in horse cytochrome c) is necessary to align the number of insertions and deletions which must be postulated sequences with those of mitochondrial cytochromes c. The to align them with mitochondrial cytochrome c. One of overall sequence similarity between these cytochromes c2 these, which includes the proteins from Rps. palustris, Rps. and mitochondrial cytochromes c is closer than that between capsulata, Rps. spherotdes (R. P. Ambler, T. E. Meyer, R. G. mitochondrial cytochromes c and the other cytochromes c2 Bartsch, and M. D. Kamen, unpublished results, see ref. 13), of known sequence, and in the latter multiple insertions and as as R.
    [Show full text]
  • Light-Independent Nitrogen Assimilation in Plant Leaves: Nitrate Incorporation Into Glutamine, Glutamate, Aspartate, and Asparagine Traced by 15N
    plants Review Light-Independent Nitrogen Assimilation in Plant Leaves: Nitrate Incorporation into Glutamine, Glutamate, Aspartate, and Asparagine Traced by 15N Tadakatsu Yoneyama 1,* and Akira Suzuki 2,* 1 Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan 2 Institut Jean-Pierre Bourgin, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), UMR1318, RD10, F-78026 Versailles, France * Correspondence: [email protected] (T.Y.); [email protected] (A.S.) Received: 3 September 2020; Accepted: 29 September 2020; Published: 2 October 2020 Abstract: Although the nitrate assimilation into amino acids in photosynthetic leaf tissues is active under the light, the studies during 1950s and 1970s in the dark nitrate assimilation provided fragmental and variable activities, and the mechanism of reductant supply to nitrate assimilation in darkness remained unclear. 15N tracing experiments unraveled the assimilatory mechanism of nitrogen from nitrate into amino acids in the light and in darkness by the reactions of nitrate and nitrite reductases, glutamine synthetase, glutamate synthase, aspartate aminotransferase, and asparagine synthetase. Nitrogen assimilation in illuminated leaves and non-photosynthetic roots occurs either in the redundant way or in the specific manner regarding the isoforms of nitrogen assimilatory enzymes in their cellular compartments. The electron supplying systems necessary to the enzymatic reactions share in part a similar electron donor system at the expense of carbohydrates in both leaves and roots, but also distinct reducing systems regarding the reactions of Fd-nitrite reductase and Fd-glutamate synthase in the photosynthetic and non-photosynthetic organs.
    [Show full text]
  • Nitrite Reductase 1 Is a Target of Nitric Oxide-Mediated Post-Translational Modifications and Controls Nitrogen Flux and Growth in Arabidopsis
    International Journal of Molecular Sciences Article Nitrite Reductase 1 Is a Target of Nitric Oxide-Mediated Post-Translational Modifications and Controls Nitrogen Flux and Growth in Arabidopsis Álvaro Costa-Broseta , MariCruz Castillo and José León * Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas, Universidad Politécnica de Valencia, 46022 Valencia, Spain; [email protected] (Á.C.-B.); [email protected] (M.C.) * Correspondence: [email protected]; Tel.: +34-963877882 Received: 15 September 2020; Accepted: 29 September 2020; Published: 1 October 2020 Abstract: Plant growth is the result of the coordinated photosynthesis-mediated assimilation of oxidized forms of C, N and S. Nitrate is the predominant N source in soils and its reductive assimilation requires the successive activities of soluble cytosolic NADH-nitrate reductases (NR) and plastid stroma ferredoxin-nitrite reductases (NiR) allowing the conversion of nitrate to nitrite and then to ammonium. However, nitrite, instead of being reduced to ammonium in plastids, can be reduced to nitric oxide (NO) in mitochondria, through a process that is relevant under hypoxic conditions, or in the cytoplasm, through a side-reaction catalyzed by NRs. We use a loss-of-function approach, based on CRISPR/Cas9-mediated genetic edition, and gain-of-function, using transgenic overexpressing HA-tagged Arabidopsis NiR1 to characterize the role of this enzyme in controlling plant growth, and to propose that the NO-related post-translational modifications, by S-nitrosylation of key C residues, might inactivate NiR1 under stress conditions. NiR1 seems to be a key target in regulating nitrogen assimilation and NO homeostasis, being relevant to the control of both plant growth and performance under stress conditions.
    [Show full text]
  • Deterioration of Denitrification by Oxygen and Cost Evaluation of Electron Donor in an Uncovered Pre-Denitrification Process
    Korean J. Chem. Eng., 29(9), 1196-1202 (2012) DOI: 10.1007/s11814-012-0004-5 INVITED REVIEW PAPER Deterioration of denitrification by oxygen and cost evaluation of electron donor in an uncovered pre-denitrification process Seung Joo Lim†, Tak-Hyun Kim, Tae-Hun Kim, and In Hwan Shin Research Division for Industry and Environment, Korea Atomic Energy Research Institute, 1266, Sinjeong, Jeongeup, Jeonbuk 580-185, Korea (Received 11 September 2011 • accepted 16 January 2012) Abstract−Specific nitrate uptake rates (SNURs) under two test conditions were measured to evaluate effects of oxy- gen inhibition on denitrification. A test condition was that activated sludge was completely prevented from contacting of oxygen (SNURclosed), the other was that activated sludge was contacted to free air (SNURopen). Municipal wastewater and acetate were used as electron donors. SNURclosed was 2.42 mg NO3-N/g VSS-hr and SNURopen was 1.09 mg NO3- N/g VSS-hr when municipal wastewater was used as electron donor. Meanwhile, when acetate was used as electron donor, SNURclosed was 24.65 mg NO3-N/g VSS-hr and SNURopen was 18.00 mg NO3-N/g VSS-hr. The operating costs for electron donors were calculated based on the unit price of acetate to remove nitrate. When municipal wastewater was used as electron donor the ratio of costopen to costclosed was 0.45. Cost evaluation showed the adverse impacts on denitrification and explained why an anoxic reactor should be sequestered from oxygen. Key words: Specific Nitrate Uptake Rate, Denitrification, Oxygen Inhibition, C/N Ratio, Cost Evaluation INTRODUCTION decades [3,8,15-19].
    [Show full text]
  • Applications and Rate-Limiting Parameters of Aerobic Denitrification
    2018 3rd International Conference on Life Sciences, Medicine, and Health (ICLSMH 2018) Applications and Rate-limiting Parameters of Aerobic Denitrification Huiying Li1, a, Wenxiang Wang1, b, Bo Yan2 1Deparment of Heavy Metal Pollution Control and Comprehensive Utilization of Resources Key Laboratory, Guangdong Polytechnic of Environmental Protection Engineering, Foshan, 528216, China 2State Key Laboratory of Organic Geochemistry, Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Science, Guangzhou 510640) aemail: [email protected], bemail: [email protected] Keywords: Aerobic denitrification; Aerobic denitrifiers; Rate-limiting parameters Abstract: The presence of nitrogenous substances in wastewater discharges has attracted attention because of the role of nitrogen in eutrophication of receiving waters. Nitrogen removal is an important aspect of present day wastewater treatment processes. However, conventional nitrification–denitrification treatment is uneconomical and difficult to operate due to extremely slow nitrification and the necessity for separate nitrification and denitrification reactors. Recently, several novel aerobic denitrification processes have been developed for cost-effective biological nitrogen removal. These processes can reduce inorganic nitrate compounds to harmless nitrogen gas. Applications of aerobic denitrifiers in wastewater processing and NOx treatment are summarized. The effect of the C/N ratio and dissolved oxygen concentration on the denitrification activity are noted. 1. Introduction In recent years, with the increase of industrial and agricultural pollution and soil erosion, nitrogen pollution has become increasingly serious. It will cause eutrophication of water bodies and may also cause harm to humans and animals. The biological nitrogen removal method is highly efficient and low-cost, and has become one of the economical and effective methods for sewage denitrification treatment.
    [Show full text]
  • Representatives of the Prokaryotic (Chapter 12) and Archaeal (Chapter 13) Domains (Bergey's Manual of Determinative Bacteriology
    Representatives of the Prokaryotic (Chapter 12) and Archaeal (Chapter 13) Domains (Bergey's Manual of Determinative Bacteriology: Kingdom: Procaryotae (9th Edition) XIII Kingdoms p. 351-471 Sectn. Group of Bacteria Subdivisions(s) Brock Text Examples of Genera Gram Stain Morphology (plus distinguishing characteristics) Important Features Phototrophic bacteria Chromatiaceae 356 Purple sulfur bacteria Gram Anoxygenic photosynthesis Bacterial chl. a and b Purple nonsulfur bacteria; photoorganotrophic for reduced nucleotides; oxidize 12.2 Anaerobic (Chromatiun; Allochromatium) Negative Spheres, rods, spirals (S inside or outside)) H2S as electron donor for CO2 anaerobic photosynthesis for ATP Purple Sulfur Bacteria Anoxic - develop well in meromictic lakes - layers - fresh S inside the cells except for Ectothiorhodospira 354 Table 12.2 p.354 above sulfate layers - Figs. 12.4, 12.5 Major membrane structures Fig.12..3 -- light required. Purple Non-Sulfur Rhodospirillales 358 Rhodospirillum, Rhodobacter Gram Diverse morphology from rods (Rhodopseudomonas) to Anoxygenic photosynthesis Bacteria Table 12.3 p. 354, 606 Rhodopseudomonas Negative spirals Fig. 12.6 H2, H2S or S serve as H donor for reduction of CO2; 358 82-83 Photoheterotrophy - light as energy source but also directly use organics 12.3 Nitrifying Bacteria Nitrobacteraceae Nitrosomonas Gram Wide spread , Diverse (rods, cocci, spirals); Aerobic Obligate chemolithotroph (inorganic eN’ donors) 6 Chemolithotrophic (nitrifying bacteria) 361 Nitrosococcus oceani - Fig.12.7 negative ! ammonia [O] = nitrosofyers - (NH3 NO2) Note major membranes Fig. 12,7) 6 359 bacteria Inorganic electron (Table 12.4) Nitrobacterwinograskii - Fig.12.8 ! nitrite [O]; = nitrifyers ;(NO2 NO3) Soil charge changes from positive to negative donors Energy generation is small Difficult to see growth. - Use of silica gel.
    [Show full text]
  • Metabolic Versatility of the Nitrite-Oxidizing Bacterium Nitrospira
    bioRxiv preprint doi: https://doi.org/10.1101/2020.07.02.185504; this version posted July 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira 2 marina and its proteomic response to oxygen-limited conditions 3 Barbara Bayer1*, Mak A. Saito2, Matthew R. McIlvin2, Sebastian Lücker3, Dawn M. Moran2, 4 Thomas S. Lankiewicz1, Christopher L. Dupont4, and Alyson E. Santoro1* 5 6 1 Department of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, 7 CA, USA 8 2 Marine Chemistry and Geochemistry Department, Woods Hole Oceanographic Institution, 9 Woods Hole, MA, USA 10 3 Department of Microbiology, IWWR, Radboud University, Nijmegen, The Netherlands 11 4 J. Craig Venter Institute, La Jolla, CA, USA 12 13 *Correspondence: 14 Barbara Bayer, Department of Ecology, Evolution and Marine Biology, University of California, 15 Santa Barbara, CA, USA. E-mail: [email protected] 16 Alyson E. Santoro, Department of Ecology, Evolution and Marine Biology, University of 17 California, Santa Barbara, CA, USA. E-mail: [email protected] 18 19 Running title: Genome and proteome of Nitrospira marina 20 21 Competing Interests: The authors declare that they have no conflict of interest. 22 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.02.185504; this version posted July 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.
    [Show full text]
  • Prokaryotic Biodiversity of Lonar Meteorite Crater Soda Lake Sediment and Community Dynamics During Microenvironmental Ph Homeostasis by Metagenomics
    Prokaryotic Biodiversity of Lonar Meteorite Crater Soda Lake Sediment and Community Dynamics During Microenvironmental pH Homeostasis by Metagenomics Dissertation for the award of the degree "Doctor of Philosophy" Ph.D. Division of Mathematics and Natural Sciences of the Georg-August-Universität Göttingen within the doctoral program in Biology of the Georg-August University School of Science (GAUSS) Submitted by Soumya Biswas from Ranchi (India) Göttingen, 2016 Thesis Committee Prof. Dr. Rolf Daniel Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, Faculty of Biology and Psychology, Georg-August-Universität Göttingen, Germany PD Dr. Michael Hoppert Department of General Microbiology, Institute of Microbiology and Genetics, Faculty of Biology and Psychology, Georg-August-Universität Göttingen, Germany Members of the Examination Board Reviewer: Prof. Dr. Rolf Daniel, Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, Faculty of Biology and Psychology, Georg-August-Universität Göttingen, Germany Second Reviewer: PD Dr. Michael Hoppert, Department of General Microbiology, Institute of Microbiology and Genetics, Faculty of Biology and Psychology, Georg-August-Universität Göttingen, Germany Further members of the Examination Board: Prof. Dr. Burkhard Morgenstern, Department of Bioinformatics, Institute of Microbiology and Genetics, Faculty of Biology and Psychology, Georg-August-Universität Göttingen, Germany PD Dr. Fabian Commichau, Department of General Microbiology,
    [Show full text]
  • DNA and RNA-SIP Reveal Nitrospira Spp. As Key Drivers of Nitrification in 2 Groundwater-Fed Biofilters
    bioRxiv preprint doi: https://doi.org/10.1101/703868; this version posted July 16, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 DNA and RNA-SIP reveal Nitrospira spp. as key drivers of nitrification in 2 groundwater-fed biofilters 3 4 Running title: Nitrospira drives nitrification in groundwater-fed biofilters 5 Authors: Arda Gülay1,4*, Jane Fowler1, Karolina Tatari1, Bo Thamdrup3, Hans-Jørgen Albrechtsen1, 6 Waleed Abu Al-Soud2, Søren J. Sørensen2 and Barth F. Smets1* 7 1 Department of Environmental Engineering, Technical University of Denmark, Building 113, Miljøvej, 2800 8 Kgs Lyngby, Denmark. Phone: +45 45251600. FAX: +45 45932850. e-mail: [email protected], jfow@ 9 env.dtu.dk, [email protected], [email protected]* 10 2 Department of Biology, University of Copenhagen, Universitetsparken 15, Building 1, 2100 Copenhagen, 11 Denmark. Phone: +45 35323710. FAX: +45 35322128. e-mail: [email protected], [email protected] 12 3 Nordic Center for Earth Evolution, Department of Biology, University of Southern Denmark, Campusvej 55, 13 5230 Odense, Denmark. Phone: +45 35323710. FAX: +45 35322128. e-mail: [email protected] 14 4 Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, United States, 15 26 Oxford St, Cambridge, MA 02138, Phone: +1 (617)4951564. e-mail: [email protected] 16 17 *Corresponding authors 18 Keywords: Nitrification, comammox, Nitrospira, DNA SIP, RNA SIP 19 bioRxiv preprint doi: https://doi.org/10.1101/703868; this version posted July 16, 2019.
    [Show full text]
  • Comparative Study of Aerobic and Nitrate Respiration in Pseudomonas Stutzeri
    AN ABSTRACT OF THE THESIS OF JERRY VINCENT MAYEUX for the Ph.D. in MICROBIOLOGY (Name) (Degree) (Major) Date thesis is presented December 12, 1964 Title COMPARATIVE STUDY OF AEROBIC AND NITRATE RESPIRATION IN PSEUDOMONAS STUTZERI Abstract approved (Major Professor) Some forms of bacterial respiration do not involve molecular oxygen but instead utilize other hydrogen acceptors for oxidation of the substrate. Various organic and inorganic acceptors may be used. In the present study, the inorganic radicals, nitrate and nitrite, were investigated. Preliminary evidence indicated that nitrate and oxygen are able to compete effectively as acceptors of hydrogen in respiration. It is the purpose of this dissertation to extend this observation with the hope that the degree of compe- tition may be elucidated and information obtained regarding the conditions under which nitrate and nitrite can most effectively compete with oxygen. A strain of Pseudomonas stutzeri was used throughout the study. Experiments were conducted with the closed electrolytic respirometer flasks which could be flushed with helium gas for anaerobic studies or with 20% oxygen in helium for aerobic studies. The vessels containing a magnetic bar were set on magnetic stirrers to obtain maximum aeration of the medium. Samples of the respirometer atmos- phere were assayed with a Beckman GC -2 gas chromatograph. Analyses for CO2, NO3-, NO2- and fermentation products were performed by conventional procedures. Dissolved oxygen was measured with a Precision Scientific Oxygen Analyzer. P. stutzeri has a definite requirement for some component sup- plied by yeast extract. No denitrifying activity is noted in the absence of yeast extract. Neither nitrate nor nitrite can be as- similated by the cell although either can be used as the sole hydrogen acceptor in respiration.
    [Show full text]
  • Nutrient Control Design Manual: State of Technology Review Report,” Were
    United States Office of Research and EPA/600/R‐09/012 Environmental Protection Development January 2009 Agency Washington, DC 20460 Nutrient Control Design Manual State of Technology Review Report EPA/600/R‐09/012 January 2009 Nutrient Control Design Manual State of Technology Review Report by The Cadmus Group, Inc 57 Water Street Watertown, MA 02472 Scientific, Technical, Research, Engineering, and Modeling Support (STREAMS) Task Order 68 Contract No. EP‐C‐05‐058 George T. Moore, Task Order Manager United States Environmental Protection Agency Office of Research and Development / National Risk Management Research Laboratory 26 West Martin Luther King Drive, Mail Code 445 Cincinnati, Ohio, 45268 Notice This document was prepared by The Cadmus Group, Inc. (Cadmus) under EPA Contract No. EP‐C‐ 05‐058, Task Order 68. The Cadmus Team was lead by Patricia Hertzler and Laura Dufresne with Senior Advisors Clifford Randall, Emeritus Professor of Civil and Environmental Engineering at Virginia Tech and Director of the Occoquan Watershed Monitoring Program; James Barnard, Global Practice and Technology Leader at Black & Veatch; David Stensel, Professor of Civil and Environmental Engineering at the University of Washington; and Jeanette Brown, Executive Director of the Stamford Water Pollution Control Authority and Adjunct Professor of Environmental Engineering at Manhattan College. Disclaimer The views expressed in this document are those of the individual authors and do not necessarily, reflect the views and policies of the U.S. Environmental Protection Agency (EPA). Mention of trade names or commercial products does not constitute endorsement or recommendation for use. This document has been reviewed in accordance with EPA’s peer and administrative review policies and approved for publication.
    [Show full text]