An Introduction to the HESSIAN
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Solutions to Math 53 Practice Second Midterm
Solutions to Math 53 Practice Second Midterm 1. (20 points) dx dy (a) (10 points) Write down the general solution to the system of equations dt = x+y; dt = −13x−3y in terms of real-valued functions. (b) (5 points) The trajectories of this equation in the (x; y)-plane rotate around the origin. Is this dx rotation clockwise or counterclockwise? If we changed the first equation to dt = −x + y, would it change the direction of rotation? (c) (5 points) Suppose (x1(t); y1(t)) and (x2(t); y2(t)) are two solutions to this equation. Define the Wronskian determinant W (t) of these two solutions. If W (0) = 1, what is W (10)? Note: the material for this part will be covered in the May 8 and May 10 lectures. 1 1 (a) The corresponding matrix is A = , with characteristic polynomial (1 − λ)(−3 − −13 −3 λ) + 13 = 0, so that λ2 + 2λ + 10 = 0, so that λ = −1 ± 3i. The corresponding eigenvector v to λ1 = −1 + 3i must be a solution to 2 − 3i 1 −13 −2 − 3i 1 so we can take v = Now we just need to compute the real and imaginary parts of 3i − 2 e3it cos(3t) + i sin(3t) veλ1t = e−t = e−t : (3i − 2)e3it −2 cos(3t) − 3 sin(3t) + i(3 cos(3t) − 2 sin(3t)) The general solution is thus expressed as cos(3t) sin(3t) c e−t + c e−t : 1 −2 cos(3t) − 3 sin(3t) 2 (3 cos(3t) − 2 sin(3t)) dx (b) We can examine the direction field. -
SUPPLEMENTARY MATERIAL: I. Fitting of the Hessian Matrix
Supplementary Material (ESI) for PCCP This journal is © the Owner Societies 2010 1 SUPPLEMENTARY MATERIAL: I. Fitting of the Hessian matrix In the fitting of the Hessian matrix elements as functions of the reaction coordinate, one can take advantage of symmetry. The non-diagonal elements may be written in the form of numerical derivatives as E(Δα, Δβ ) − E(Δα,−Δβ ) − E(−Δα, Δβ ) + E(−Δα,−Δβ ) H (α, β ) = . (S1) 4δ 2 Here, α and β label any of the 15 atomic coordinates in {Cx, Cy, …, H4z}, E(Δα,Δβ) denotes the DFT energy of CH4 interacting with Ni(111) with a small displacement along α and β, and δ the small displacement used in the second order differencing. For example, the H(Cx,Cy) (or H(Cy,Cx)) is 0, since E(ΔCx ,ΔC y ) = E(ΔC x ,−ΔC y ) and E(−ΔCx ,ΔC y ) = E(−ΔCx ,−ΔC y ) . From Eq.S1, one can deduce the symmetry properties of H of methane interacting with Ni(111) in a geometry belonging to the Cs symmetry (Fig. 1 in the paper): (1) there are always 18 zero elements in the lower triangle of the Hessian matrix (see Fig. S1), (2) the main block matrices A, B and F (see Fig. S1) can be split up in six 3×3 sub-blocks, namely A1, A2 , B1, B2, F1 and F2, in which the absolute values of all the corresponding elements in the sub-blocks corresponding to each other are numerically identical to each other except for the sign of their off-diagonal elements, (3) the triangular matrices E1 and E2 are also numerically the same except for the sign of their off-diagonal terms, (4) the 1 Supplementary Material (ESI) for PCCP This journal is © the Owner Societies 2010 2 block D is a unique block and its off-diagonal terms differ only from each other in their sign. -
EUCLIDEAN DISTANCE MATRIX COMPLETION PROBLEMS June 6
EUCLIDEAN DISTANCE MATRIX COMPLETION PROBLEMS HAW-REN FANG∗ AND DIANNE P. O’LEARY† June 6, 2010 Abstract. A Euclidean distance matrix is one in which the (i, j) entry specifies the squared distance between particle i and particle j. Given a partially-specified symmetric matrix A with zero diagonal, the Euclidean distance matrix completion problem (EDMCP) is to determine the unspecified entries to make A a Euclidean distance matrix. We survey three different approaches to solving the EDMCP. We advocate expressing the EDMCP as a nonconvex optimization problem using the particle positions as variables and solving using a modified Newton or quasi-Newton method. To avoid local minima, we develop a randomized initial- ization technique that involves a nonlinear version of the classical multidimensional scaling, and a dimensionality relaxation scheme with optional weighting. Our experiments show that the method easily solves the artificial problems introduced by Mor´e and Wu. It also solves the 12 much more difficult protein fragment problems introduced by Hen- drickson, and the 6 larger protein problems introduced by Grooms, Lewis, and Trosset. Key words. distance geometry, Euclidean distance matrices, global optimization, dimensional- ity relaxation, modified Cholesky factorizations, molecular conformation AMS subject classifications. 49M15, 65K05, 90C26, 92E10 1. Introduction. Given the distances between each pair of n particles in Rr, n r, it is easy to determine the relative positions of the particles. In many applications,≥ though, we are given only some of the distances and we would like to determine the missing distances and thus the particle positions. We focus in this paper on algorithms to solve this distance completion problem. -
Linear Independence, the Wronskian, and Variation of Parameters
LINEAR INDEPENDENCE, THE WRONSKIAN, AND VARIATION OF PARAMETERS JAMES KEESLING In this post we determine when a set of solutions of a linear differential equation are linearly independent. We first discuss the linear space of solutions for a homogeneous differential equation. 1. Homogeneous Linear Differential Equations We start with homogeneous linear nth-order ordinary differential equations with general coefficients. The form for the nth-order type of equation is the following. dnx dn−1x (1) a (t) + a (t) + ··· + a (t)x = 0 n dtn n−1 dtn−1 0 It is straightforward to solve such an equation if the functions ai(t) are all constants. However, for general functions as above, it may not be so easy. However, we do have a principle that is useful. Because the equation is linear and homogeneous, if we have a set of solutions fx1(t); : : : ; xn(t)g, then any linear combination of the solutions is also a solution. That is (2) x(t) = C1x1(t) + C2x2(t) + ··· + Cnxn(t) is also a solution for any choice of constants fC1;C2;:::;Cng. Now if the solutions fx1(t); : : : ; xn(t)g are linearly independent, then (2) is the general solution of the differential equation. We will explain why later. What does it mean for the functions, fx1(t); : : : ; xn(t)g, to be linearly independent? The simple straightforward answer is that (3) C1x1(t) + C2x2(t) + ··· + Cnxn(t) = 0 implies that C1 = 0, C2 = 0, ::: , and Cn = 0 where the Ci's are arbitrary constants. This is the definition, but it is not so easy to determine from it just when the condition holds to show that a given set of functions, fx1(t); x2(t); : : : ; xng, is linearly independent. -
Removing External Degrees of Freedom from Transition State
Removing External Degrees of Freedom from Transition State Search Methods using Quaternions Marko Melander1,2*, Kari Laasonen1,2, Hannes Jónsson3,4 1) COMP Centre of Excellence, Aalto University, FI-00076 Aalto, Finland 2) Department of Chemistry, Aalto University, FI-00076 Aalto, Finland 3) Department of Applied Physics, Aalto University, FI-00076 Aalto, Finland 4) Faculty of Physical Sciences, University of Iceland, 107 Reykjavík, Iceland 1 ABSTRACT In finite systems, such as nanoparticles and gas-phase molecules, calculations of minimum energy paths (MEP) connecting initial and final states of transitions as well as searches for saddle points are complicated by the presence of external degrees of freedom, such as overall translation and rotation. A method based on quaternion algebra for removing the external degrees of freedom is described here and applied in calculations using two commonly used methods: the nudged elastic band (NEB) method for finding minimum energy paths and DIMER method for finding the minimum mode in minimum mode following searches of first order saddle points. With the quaternion approach, fewer images in the NEB are needed to represent MEPs accurately. In both NEB and DIMER calculations of finite systems, the number of iterations required to reach convergence is significantly reduced. The algorithms have been implemented in the Atomic Simulation Environment (ASE) open source software. Keywords: Nudged Elastic Band, DIMER, quaternion, saddle point, transition. 2 1. INTRODUCTION Chemical reactions, diffusion events and configurational changes of molecules are transitions from some initial arrangement of the atoms to another, from an initial state minimum on the energy surface to a final state minimum. -
Linear Algebra Review James Chuang
Linear algebra review James Chuang December 15, 2016 Contents 2.1 vector-vector products ............................................... 1 2.2 matrix-vector products ............................................... 2 2.3 matrix-matrix products ............................................... 4 3.2 the transpose .................................................... 5 3.3 symmetric matrices ................................................. 5 3.4 the trace ....................................................... 6 3.5 norms ........................................................ 6 3.6 linear independence and rank ............................................ 7 3.7 the inverse ...................................................... 7 3.8 orthogonal matrices ................................................. 8 3.9 range and nullspace of a matrix ........................................... 8 3.10 the determinant ................................................... 9 3.11 quadratic forms and positive semidefinite matrices ................................ 10 3.12 eigenvalues and eigenvectors ........................................... 11 3.13 eigenvalues and eigenvectors of symmetric matrices ............................... 12 4.1 the gradient ..................................................... 13 4.2 the Hessian ..................................................... 14 4.3 gradients and hessians of linear and quadratic functions ............................. 15 4.5 gradients of the determinant ............................................ 16 4.6 eigenvalues -
Linear Algebra Primer
Linear Algebra Review Linear Algebra Primer Slides by Juan Carlos Niebles*, Ranjay Krishna* and Maxime Voisin *Stanford Vision and Learning Lab 27 - Sep - 2018 Another, very in-depth linear algebra review from CS229 is available here: http://cs229.stanford.edu/section/cs229-linalg.pdf And a video discussion of linear algebra from EE263 is here (lectures 3 and 4): https://see.stanford.edu/Course/EE263 1 Stanford University Outline Linear Algebra Review • Vectors and matrices – Basic Matrix Operations – Determinants, norms, trace – Special Matrices • Transformation Matrices – Homogeneous coordinates – Translation • Matrix inverse 27 - • Matrix rank Sep - • Eigenvalues and Eigenvectors 2018 • Matrix Calculus 2 Stanford University Outline Vectors and matrices are just Linear Algebra Review • Vectors and matrices collections of ordered numbers – Basic Matrix Operations that represent something: location in space, speed, pixel brightness, – Determinants, norms, trace etc. We’ll define some common – Special Matrices uses and standard operations on • Transformation Matrices them. – Homogeneous coordinates – Translation • Matrix inverse 27 - • Matrix rank Sep - • Eigenvalues and Eigenvectors 2018 • Matrix Calculus 3 Stanford University Vector Linear Algebra Review • A column vector where • A row vector where 27 - Sep - 2018 denotes the transpose operation 4 Stanford University Vector • We’ll default to column vectors in this class Linear Algebra Review 27 - Sep - • You’ll want to keep track of the orientation of your 2018 vectors when programming in python 5 Stanford University Some vectors have a geometric interpretation, others don’t… Linear Algebra Review • Other vectors don’t have a • Some vectors have a geometric interpretation: geometric – Vectors can represent any kind of interpretation: 27 data (pixels, gradients at an - – Points are just vectors image keypoint, etc) Sep - from the origin. -
Lecture 11: Maxima and Minima
LECTURE 11 Maxima and Minima n n Definition 11.1. Let f : R → R be a real-valued function of several variables. A point xo ∈ R is called a local minimum of f if there is a neighborhood U of xo such that f(x) ≥ f(xo) for all x ∈ U. n A point xo ∈ R is called a local maxmum of f if there is a neighborhood U of xo such that f(x) ≤ f(xo) for all x ∈ U . n A point xo ∈ R is called a local extremum if it is either a local minimum or a local maximum. Definition 11.2. Let f : Rn → R be a real-valued function of several variables. A critical point of f is a point xo where ∇f(xo)=0. If a critical point is not also a local extremum then it is called a saddle point. n Theorem 11.3. Suppose U is an open subset of R , f : U → R is differentiable, and xo is a local extremum. Then ∇f(xo)=0 i.e., xo is a critical point of f. Proof. Suppose xo is an extremum of f. Then there exists a neighborhood N of xo such that either f(x) ≥ f (xo) , for all x ∈ N or f(x) ≤ f (xo) , for all x ∈ NR. n Let σ : I ⊂ R → R be any smooth path such that σ(0) = xo. Since σ is in particular continuous, there must be a subinterval IN of I containing 0 such that σ(t) ∈ N,for all t ∈ IN . But then if we define h(t) ≡ f (σ(t)) we see that since σ(t)liesinNfor all t ∈ IN , we must have either h(t)=f(σ(t)) ≥ f (xo)=h(0) , for all t ∈ IN or h(t)=f(σ(t)) ≤ f (xo)=h(0) , for all t ∈ IN . -
Linear Operators Hsiu-Hau Lin [email protected] (Mar 25, 2010)
Linear Operators Hsiu-Hau Lin [email protected] (Mar 25, 2010) The notes cover linear operators and discuss linear independence of func- tions (Boas 3.7-3.8). • Linear operators An operator maps one thing into another. For instance, the ordinary func- tions are operators mapping numbers to numbers. A linear operator satisfies the properties, O(A + B) = O(A) + O(B);O(kA) = kO(A); (1) where k is a number. As we learned before, a matrix maps one vector into another. One also notices that M(r1 + r2) = Mr1 + Mr2;M(kr) = kMr: Thus, matrices are linear operators. • Orthogonal matrix The length of a vector remains invariant under rotations, ! ! x0 x x0 y0 = x y M T M : y0 y The constraint can be elegantly written down as a matrix equation, M T M = MM T = 1: (2) In other words, M T = M −1. For matrices satisfy the above constraint, they are called orthogonal matrices. Note that, for orthogonal matrices, computing inverse is as simple as taking transpose { an extremely helpful property for calculations. From the product theorem for the determinant, we immediately come to the conclusion det M = ±1. In two dimensions, any 2 × 2 orthogonal matrix with determinant 1 corresponds to a rotation, while any 2 × 2 orthogonal HedgeHog's notes (March 24, 2010) 2 matrix with determinant −1 corresponds to a reflection about a line. Let's come back to our good old friend { the rotation matrix, cos θ − sin θ ! cos θ sin θ ! R(θ) = ;RT = : (3) sin θ cos θ − sin θ cos θ It is straightforward to check that RT R = RRT = 1. -
Applications of the Wronskian and Gram Matrices of {Fie”K?
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Applications of the Wronskian and Gram Matrices of {fie”k? Robert E. Hartwig Mathematics Department North Carolina State University Raleigh, North Carolina 27650 Submitted by S. Barn&t ABSTRACT A review is made of some of the fundamental properties of the sequence of functions {t’b’}, k=l,..., s, i=O ,..., m,_,, with distinct X,. In particular it is shown how the Wronskian and Gram matrices of this sequence of functions appear naturally in such fields as spectral matrix theory, controllability, and Lyapunov stability theory. 1. INTRODUCTION Let #(A) = II;,,< A-hk)“‘k be a complex polynomial with distinct roots x 1,.. ., A,, and let m=ml+ . +m,. It is well known [9] that the functions {tieXk’}, k=l,..., s, i=O,l,..., mkpl, form a fundamental (i.e., linearly inde- pendent) solution set to the differential equation m)Y(t)=O> (1) where D = $(.). It is the purpose of this review to illustrate some of the important properties of this independent solution set. In particular we shall show that both the Wronskian matrix and the Gram matrix play a dominant role in certain applications of matrix theory, such as spectral theory, controllability, and the Lyapunov stability theory. Few of the results in this paper are new; however, the proofs we give are novel and shed some new light on how the various concepts are interrelated, and on why certain results work the way they do. LINEAR ALGEBRA ANDITSAPPLlCATIONS43:229-241(1982) 229 C Elsevier Science Publishing Co., Inc., 1982 52 Vanderbilt Ave., New York, NY 10017 0024.3795/82/020229 + 13$02.50 230 ROBERT E. -
Hessian Matrices, Automorphisms of P-Groups, and Torsion Points of Elliptic Curves
Mathematische Annalen https://doi.org/10.1007/s00208-021-02193-8 Mathematische Annalen Hessian matrices, automorphisms of p-groups, and torsion points of elliptic curves Mima Stanojkovski1 · Christopher Voll2 Received: 21 December 2019 / Revised: 13 April 2021 / Accepted: 22 April 2021 © The Author(s) 2021 Abstract We describe the automorphism groups of finite p-groups arising naturally via Hessian determinantal representations of elliptic curves defined over number fields. Moreover, we derive explicit formulas for the orders of these automorphism groups for elliptic curves of j-invariant 1728 given in Weierstrass form. We interpret these orders in terms of the numbers of 3-torsion points (or flex points) of the relevant curves over finite fields. Our work greatly generalizes and conceptualizes previous examples given by du Sautoy and Vaughan-Lee. It explains, in particular, why the orders arising in these examples are polynomial on Frobenius sets and vary with the primes in a nonquasipolynomial manner. Mathematics Subject Classification 20D15 · 11G20 · 14M12 Contents 1 Introduction and main results ...................................... 2 Groups and Lie algebras from (symmetric) forms ............................ 3 Automorphisms and torsion points of elliptic curves .......................... 4 Degeneracy loci and automorphisms of p-groups ............................ 5 Proofs of the main results and their corollaries ............................. References .................................................. Communicated by Andreas Thom. B Christopher Voll [email protected] Mima Stanojkovski [email protected] 1 Max-Planck-Institute for Mathematics in the Sciences, Inselstrasse 22, 04103 Leipzig, Germany 2 Fakultät für Mathematik, Universität Bielefeld, 33501 Bielefeld, Germany 123 M. Stanojkovski, C. Voll 1 Introduction and main results In the study of general questions about finite p-groups it is frequently beneficial to focus on groups in natural families. -
Chapter 7 Principal Hessian Directions
Chapter 7 Principal Hessian Directions The dimension reduction and visualization techniques introduced so far are based on the inverse regression point of view. The roles of Y and x are interchanged. In this chapter, a forward method, principal Hessian Direction( pHd ) (Li 1992, JASA) will be introduced. Let f (x) be the regression function E(Y |x), which is a p dimensional function. Consider the Hessian matrix H(x) of f (x), ∂2 H(x) = the p by p matrix with the ijth entry equal to f (x) ∂xi ∂x j Hessian matrices are important in studying multivariate nonlinear functions. The methodol- ogy of pHd focuses on the ultilization of the properties of Hessian matrices for dimension reduction and visualization. Similar to SIR, there are a few variants in the approach of pHd. For more recent development on PHD, see Cook(1998). 7.1 Principal Hessian directions. The Hessian matrix typically varies as x changes unless the surface is quadratic. Difficulties associated with the curse of dimensionality arise quickly if we were to estimate it for each location. Instead, we turn to the average Hessian, H¯ = EH(x) We define the principal Hessian directions to be the eigenvectors b1, ···, bp of the matrix ¯ Hx, where x denotes the covariance matrix of x : ¯ Hxb j = λ j b j , j = 1, ···, p (1.1) |λ1|≥···≥|λp| Why not defining the principal Hessian directions by the eigenvalue decomposition of ¯ the average Hessian H ? One reason is that with right-multiplication of x, the procedure becomes invariant under affine transformation of x. This is an important property to have for our purpose of visualization and dimension reduction.