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The Taxonomy of Primates in the Laboratory Context
P0800261_01 7/14/05 8:00 AM Page 3 C HAPTER 1 The Taxonomy of Primates T HE T in the Laboratory Context AXONOMY OF P Colin Groves RIMATES School of Archaeology and Anthropology, Australian National University, Canberra, ACT 0200, Australia 3 What are species? D Taxonomy: EFINITION OF THE The biological Organizing nature species concept Taxonomy means classifying organisms. It is nowadays commonly used as a synonym for systematics, though Disagreement as to what precisely constitutes a species P strictly speaking systematics is a much broader sphere is to be expected, given that the concept serves so many RIMATE of interest – interrelationships, and biodiversity. At the functions (Vane-Wright, 1992). We may be interested basis of taxonomy lies that much-debated concept, the in classification as such, or in the evolutionary implica- species. tions of species; in the theory of species, or in simply M ODEL Because there is so much misunderstanding about how to recognize them; or in their reproductive, phys- what a species is, it is necessary to give some space to iological, or husbandry status. discussion of the concept. The importance of what we Most non-specialists probably have some vague mean by the word “species” goes way beyond taxonomy idea that species are defined by not interbreeding with as such: it affects such diverse fields as genetics, biogeog- each other; usually, that hybrids between different species raphy, population biology, ecology, ethology, and bio- are sterile, or that they are incapable of hybridizing at diversity; in an era in which threats to the natural all. Such an impression ultimately derives from the def- world and its biodiversity are accelerating, it affects inition by Mayr (1940), whereby species are “groups of conservation strategies (Rojas, 1992). -
Species Concepts and the Evolutionary Paradigm in Modern Nematology
JOURNAL OF NEMATOLOGY VOLUME 30 MARCH 1998 NUMBER 1 Journal of Nematology 30 (1) :1-21. 1998. © The Society of Nematologists 1998. Species Concepts and the Evolutionary Paradigm in Modern Nematology BYRON J. ADAMS 1 Abstract: Given the task of recovering and representing evolutionary history, nematode taxonomists can choose from among several species concepts. All species concepts have theoretical and (or) opera- tional inconsistencies that can result in failure to accurately recover and represent species. This failure not only obfuscates nematode taxonomy but hinders other research programs in hematology that are dependent upon a phylogenetically correct taxonomy, such as biodiversity, biogeography, cospeciation, coevolution, and adaptation. Three types of systematic errors inherent in different species concepts and their potential effects on these research programs are presented. These errors include overestimating and underestimating the number of species (type I and II error, respectively) and misrepresenting their phylogenetic relationships (type III error). For research programs in hematology that utilize recovered evolutionary history, type II and III errors are the most serious. Linnean, biological, evolutionary, and phylogenefic species concepts are evaluated based on their sensitivity to systematic error. Linnean and biologica[ species concepts are more prone to serious systematic error than evolutionary or phylogenetic concepts. As an alternative to the current paradigm, an amalgamation of evolutionary and phylogenetic species concepts is advocated, along with a set of discovery operations designed to minimize the risk of making systematic errors. Examples of these operations are applied to species and isolates of Heterorhab- ditis. Key words: adaptation, biodiversity, biogeography, coevolufion, comparative method, cospeciation, evolution, nematode, philosophy, species concepts, systematics, taxonomy. -
29 Figure8. the Limited Rank Hydrophilic Sedge and Grass Patches Within the Central Valley Bottom Wetland Provide Suitable Roost
Figure8. The limited rank hydrophilic sedge and grass patches within the central valley bottom wetland provide suitable roosting and foraging habitat for African Grass Owls. The high levels of human disturbances on the site including hunting with dogs; severely restricts the likelihood of any nests and limits potential roosting suitability. The annual burning of the site restricts the vegetative cover along the valley bottom wetland. Off-road bikes, quads and vehicle tracks transverse the entire site as well as helicopter training and landing on the site and open areas to the south of the site adjacent to the Waterval cemetery. African Grass Owls are found exclusively in rank grass, typically, although not only, at fair altitudes. Grass Owls are secretive and nomadic breeding in permanent and seasonal vleis, which it vacates while hunting or post-breeding, although it will breed in any area of long grass and it is not necessarily associated with wetlands. It marshlands it is usually outnumbered by the more common Marsh Owl (Asio capensis) 10:1 (Tarboton et al. 1987). Grass Owls nest on the ground within a system of tunnels constructed in mostly tall grass; peak-breeding activity (February- April) tends to coincide with maximum grass cover (Steyn 1982). Grass Owls specialise in large rodent prey, particularly Otomys vlei rats, although a wide range of rodent prey species, including Rhabdomys, Praomys, Mus, and Suncus, are taken (Earle 1978). Some local and nomadic movements in response to fluctuating food supplies, fire and the availability of suitable habitat can be expected (Steyn 1982). The ecological requirements of this species make it susceptible to many land-use changes impacting contemporary South Africa. -
Sistema De Túneles Del Jerbo Iraní (Alloctaga Firouzi Womochel, 1978)
ISSN 0065-1737 Acta Zoológica Mexicana (n.s.) 26(2): 457-463 (2010) BURROW SYSTEMS OF IRANIAN JERBOA (ALLACTAGA FIROUZI WOMOCHEL, 1978) Saeed MOHAMMADI1*, Mohammad KABOLI2, Mahmoud KARAMI2 and Gholamreza NADERI3 1 Department of Environmental Sciences, Sciences & Research Branch, Islamic Azad University, Tehran, IRAN, E-mail: [email protected] 2 Department of Environmental, Faculty of Natural Resources, University of Tehran, Karaj, IRAN, E-mail: [email protected] E-mail: [email protected] 3 Department of Environmental Sciences, Sciences & Research Branch, Islamic Azad University, Tehran, IRAN, E-mail: [email protected] * Corresponding author: Saeed Mohammadi Mohammadi, S., M. Kaboli., M. Karami & Gh. Naderi. 2010. Borrow systems of Iranian jerboa (Allactaga firouzi Womochel, 1978). Acta Zool. Mex. (n.s.), 26(2): 457-463. ABSTRACT. Iranian jerboa was recorded as a new species for Iran near village of Shah-Reza, Isfahan province. It is considered as a data deficient species according to IUCN criteria. Since, No data have been yet reported, on the relationship between architecture of burrows and the social organization of this species, this study aimed to identify the burrow systems of the species. We excavated 15 burrows of Iranian jerboa in the type locality of the species. The burrow system of Iranian jerboa is composed of three types including: temporary, summer and winter burrows. The length of tunnels were significantly different (P=0.00) in winter burrows. General burrow described for Small Five-toed jerboa Allactaga elater was similar with these burrows except having reproduction burrow. Results show that depth of nest chamber in third type of burrow was deeper than in temporary and summer (P=0.00, P=0.003 respectively). -
Speciation in Geographical Setting
Speciation Speciation 2019 2019 The degree of reproductive isolation Substantial variation exists in among geographical sets of species - anagenesis populations within an actively 1859 1859 evolving species complex is often Achillea - yarrow tested by crossing experiments — as in the tidy tips of California 100K bp 100K bp back in time back in time back Rubus parviforus K = 4 mean population assignment 2 mya 2 mya ID CO WI_Door 5 mya BC_Hixton BC_MtRob WI_BruleS 5 mya BC_McLeod CA_Klamath MI_Windigo WA_Cascade WA_BridgeCr SD_BlackHills OR_Willamette MI_Drummond Speciation Speciation 2019 Reproductive isolation will ultimately stop all Although simple in concept, the recognition of species and thus the definition genetic connections among sets of populations of what are species have been controversial — more than likely due to the – cladogenesis or speciation continuum nature of the pattern resulting from the process of speciation 1859 Example: mechanical isolation via floral shape changes and pollinators between two parapatric species of California Salvia (sage) 100K bp back in time back 2 mya S. mellifera 5 mya Salvia apiana 1 Speciation Speciation Although simple in concept, the recognition of species and thus the definition Animal examples of speciation often show of what are species have been controversial — more than likely due to the clear reproductive barriers - hence zoologists continuum nature of the pattern resulting from the process of speciation preference (as opposed to botanists) for the Reproductive isolating Biological -
Chapter 15 the Mammals of Angola
Chapter 15 The Mammals of Angola Pedro Beja, Pedro Vaz Pinto, Luís Veríssimo, Elena Bersacola, Ezequiel Fabiano, Jorge M. Palmeirim, Ara Monadjem, Pedro Monterroso, Magdalena S. Svensson, and Peter John Taylor Abstract Scientific investigations on the mammals of Angola started over 150 years ago, but information remains scarce and scattered, with only one recent published account. Here we provide a synthesis of the mammals of Angola based on a thorough survey of primary and grey literature, as well as recent unpublished records. We present a short history of mammal research, and provide brief information on each species known to occur in the country. Particular attention is given to endemic and near endemic species. We also provide a zoogeographic outline and information on the conservation of Angolan mammals. We found confirmed records for 291 native species, most of which from the orders Rodentia (85), Chiroptera (73), Carnivora (39), and Cetartiodactyla (33). There is a large number of endemic and near endemic species, most of which are rodents or bats. The large diversity of species is favoured by the wide P. Beja (*) CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal CEABN-InBio, Centro de Ecologia Aplicada “Professor Baeta Neves”, Instituto Superior de Agronomia, Universidade de Lisboa, Lisboa, Portugal e-mail: [email protected] P. Vaz Pinto Fundação Kissama, Luanda, Angola CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus de Vairão, Vairão, Portugal e-mail: [email protected] L. Veríssimo Fundação Kissama, Luanda, Angola e-mail: [email protected] E. -
Ecological Basic Assessment Report
ECOLOGICAL BASIC ASSESSMENT REPORT THE PREVIOUSLY APPROVED KRUISVALLEI HYDROELECTRIC POWER GENERATION SCHEME IN THE ASH RIVER, FREE STATE PROVINCE February 2018 Prepared by: Prepared for: Gerhard Botha (Pri Sci Nat: Ecology & Botany) Savannah Environmental (Pty) Ltd 1st Floor, Block 2, 5 Woodlands Drive Office Park PO Box 12500, Brandhof, 9324 Cnr Woodlands Drive & Western Service Road Cell: 084 207 3454 Woodmead Email: [email protected] KRUISVALLLEI HYDROELECTRIC POWER GENERATION SCHEME, CLARENS ECOLOGICAL BASIC ASSESSMENT REPORT FEBRUARY 2018 TABLE OF CONTENTS Declaration of Consultant’s Independence .................................................... iii 1 Introduction ........................................................................................ 1 1.1 Project Background ........................................................................ 1 1.2 Proposed Activity ........................................................................... 2 1.3 Location ........................................................................................ 3 1.4 Terms of reference ......................................................................... 4 1.5 Conditions of this report ................................................................. 4 1.6 Limitations and Assumptions of the Study Approach ........................... 5 1.2.1. General assumptions ................................................................. 5 1.2.2. Limitations ............................................................................... 5 1.7 Relevant -
Micromammal Paleoecology
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CU Scholar Institutional Repository University of Colorado, Boulder CU Scholar Anthropology Graduate Theses & Dissertations Anthropology Spring 1-1-2011 Micromammal Paleoecology: Theory, Methods, and Application to Modern and Fossil Assemblages in The rC adle of Humankind World Heritage Site, South Africa Jennifer Nicole Leichliter University of Colorado at Boulder, [email protected] Follow this and additional works at: http://scholar.colorado.edu/anth_gradetds Part of the Biological and Physical Anthropology Commons Recommended Citation Leichliter, Jennifer Nicole, "Micromammal Paleoecology: Theory, Methods, and Application to Modern and Fossil Assemblages in The Cradle of Humankind World Heritage Site, South Africa" (2011). Anthropology Graduate Theses & Dissertations. Paper 7. This Thesis is brought to you for free and open access by Anthropology at CU Scholar. It has been accepted for inclusion in Anthropology Graduate Theses & Dissertations by an authorized administrator of CU Scholar. For more information, please contact [email protected]. Micromammal Paleoecology: Theory, Methods, and Application to Modern and Fossil Assemblages in The Cradle of Humankind World Heritage Site, South Africa by Jennifer Leichliter B.A., Colorado College, 2008 A thesis submitted to the Faculty of the Graduate School of the University of Colorado in partial fulfillment of the requirement for the degree of Master’s of Anthropology Department of Anthropology 2011 This thesis entitled: Micromammal Paleoecology: Theory, Methods, and Application to Modern and Fossil Assemblages in The Cradle of Humankind World Heritage Site, South Africa written by Jennifer Nicole Leichliter has been approved for the Department Anthropology ________________________________________________ Dr. -
Is the Biological Species Concept Showing Its Age? Mohamed A.F
Research Update TRENDS in Ecology & Evolution Vol.17 No.4 April 2002 153 Research News Is the biological species concept showing its age? Mohamed A.F. Noor A recent paper by Chung-I Wu in the Journal not been attained. Hence, such a strict and whether Wu’s proposed revision has of Evolutionary Biology questions the value definition would not match the intuition any advantages. Most of those who of the popular biological species concept of most biologists. Second, speciation responded on these issues were not (BSC) and offers an alternative ‘genic’ is usually driven by natural or sexual favorable to Wu’s proposal. concept based on possessing ‘loci of selection causing functional divergence. Wu presents examples in which the differential adaptation.’ Wu suggests that However, the BSC does not delineate the BSC delineates taxa as species that would recent empirical results from genetic studies evolutionary forces that cause divergence. not attain this designation under his genic of speciation necessitate this revision. As such, the BSC considers reproductively definition. For example, he notes that Several prominent evolutionary biologists isolated units to be species, even if taxa infected with different strains of responded in the same issue, many noting differential adaptation is not apparent. Wolbachia (hence preventing gene excitement over the recent empirical results, Wu proposes what he calls a ‘genic view exchange through cytoplasmic few agreeing with an abandonment of the of the process of speciation’. He suggests incompatibility) would be defined as BSC, and none wholeheartedly embracing that the point in divergence at which species by the BSC. Is this species the new genic concept. -
VIEW Open Access Busting Myths About “Species” Charles H Pence
Pence Evolution: Education and Outreach 2014, 7:21 http://www.evolution-outreach.com/content/7/1/21 BOOK REVIEW Open Access Busting myths about “species” Charles H Pence Keywords: Species; Essentialism; Aristotle; Plato; Ernst Mayr; History of biology Book details “Species” from Plato to Darwin Wilkins, John S. With regard to the development of the concept of spe- Species: A History of the Idea cies before Darwin, Wilkins rightly notes that there is an Berkeley, CA: University of California Press, 2009. accepted, standard narrative of this history, constructed, xiv + 288 pp., index, ISBN 9780520260856. as he deftly shows, by biologists during the New Synthesis (around 1958, in fact; p. xi). The “received view” goes something like this. Taking a combination of Platonist es- Species sentialism and Aristotelian logic as a basis, the “species A History of the Idea, by John S. Wilkins. Berkeley, CA: concept” of Linnaeus and all others before Darwin holds University of California Press, 2009. Pp. xiv + 288, index. that species are permanent, eternal, fixed objects consist- H/b $31.95. ing of a set of essential or typical properties, deviations It is a claim often repeated, and reinforced by the peri- from which can at best be monstrous. This is the bogey- odic publication of hefty monographs on the subject man which Mayr labeled “typological thinking” (Mayr (Coyne and Orr 2004), that there is a “species problem” 1959), and, as the story goes, one of Darwin’sgreatestac- in evolutionary biology. Ernst Mayr, in his 1942 book, complishments was its overthrow and replacement by wrote it into the ground floor of the New Synthesis. -
Mammals, Birds, Reptiles, Fish, Insects, Aquatic Invertebrates and Ecosystems
AWF FOUR CORNERS TBNRM PROJECT : REVIEWS OF EXISTING BIODIVERSITY INFORMATION i Published for The African Wildlife Foundation's FOUR CORNERS TBNRM PROJECT by THE ZAMBEZI SOCIETY and THE BIODIVERSITY FOUNDATION FOR AFRICA 2004 PARTNERS IN BIODIVERSITY The Zambezi Society The Biodiversity Foundation for Africa P O Box HG774 P O Box FM730 Highlands Famona Harare Bulawayo Zimbabwe Zimbabwe Tel: +263 4 747002-5 E-mail: [email protected] E-mail: [email protected] Website: www.biodiversityfoundation.org Website : www.zamsoc.org The Zambezi Society and The Biodiversity Foundation for Africa are working as partners within the African Wildlife Foundation's Four Corners TBNRM project. The Biodiversity Foundation for Africa is responsible for acquiring technical information on the biodiversity of the project area. The Zambezi Society will be interpreting this information into user-friendly formats for stakeholders in the Four Corners area, and then disseminating it to these stakeholders. THE BIODIVERSITY FOUNDATION FOR AFRICA (BFA is a non-profit making Trust, formed in Bulawayo in 1992 by a group of concerned scientists and environmentalists. Individual BFA members have expertise in biological groups including plants, vegetation, mammals, birds, reptiles, fish, insects, aquatic invertebrates and ecosystems. The major objective of the BFA is to undertake biological research into the biodiversity of sub-Saharan Africa, and to make the resulting information more accessible. Towards this end it provides technical, ecological and biosystematic expertise. THE ZAMBEZI SOCIETY was established in 1982. Its goals include the conservation of biological diversity and wilderness in the Zambezi Basin through the application of sustainable, scientifically sound natural resource management strategies. -
Species & Speciation
Species & Speciation http://malawicichlids.com/ 1 4 “In short, we shall have to treat species in the same manner as those naturalists treat genera, who admit that genera are merely artificial combinations made for convenience. This may not be a cheering prospect; but we shall at least be free from the vain search for the undiscovered and undiscoverable essence of the term species.” Darwin 1859 2 5 Folk Concept Microevolution Macroevolution - of populations - taxonomic diversity - experimental - paleontology - anagenesis - cladogenesis • Reproductive compatibility • Discontinuity 3 6 Species = L.”kind” Reproductive Isolation prezygotic • extrinsic • mate discrimination • gametic incompatibility postzygotic hybrid - • inviability • sterility Raven Crow • breakdown 7 10 Freq. (kHz) Ph. variolosus (Fy) Time (ms) B. obliqua (Fy) P. inanis (F) Donelson et al, unpubl. 8 11 Cryptic Biological Species Concept (BSC) species Species are groups of actually, or potentially, interbreeding natural populations that are reproductively isolated from other such groups. Mayr, 1942 Chrysoperla (lace wings) 9 12 a a a Problems • Limited domain of application • Inapplicable in practice Morph R ! Molecular R = G x C Bluegill sunfish 13 16 Problems Problems • Limited domain of • Limited domain of application application • Inapplicable in practice • Breeding experiments often inconclusive Bluegill sunfish 14 17 Problems • Limited domain of application • Inapplicable in practice • Breeding experiments often inconclusive • Groups which don’t co- occur in time cannot be evaluated Allender et al, PNAS 2003 Bluegill sunfish 15 18 Biological Species Concept (BSC) Alternatives: Species are groups of Biological SC actually, or potentially, Evolutionary/ Phylogenetic SC interbreeding natural Morphological SC populations that are reproductively isolated Recognition SC from other such groups.