Description of Seinura Italiensis N. Sp.(Tylenchomorpha
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PCR-RFLP and Sequencing Analysis of Ribosomal DNA of Bursaphelenchus Nematodes Related to Pine Wilt Disease(L)
Fundam. appl. Nemalol., 1998,21 (6), 655-666 PCR-RFLP and sequencing analysis of ribosomal DNA of Bursaphelenchus nematodes related to pine wilt disease(l) Hideaki IvVAHORI, Kaku TSUDA, Natsumi KANZAKl, Katsura IZUI and Kazuyoshi FUTAI Cmduate School ofAgriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan. Accepted for publication 23 December 1997. Summary -A polymerase chain reaction - restriction fragment polymorphism (PCR-RFLP) analysis was used for the discri mination of isolates of Bursaphelenchus nematode. The isolares of B. xylophilus examined originared from Japan, the United Stares, China, and Canada and the B. mucronatus isolates from Japan, China, and France. Ribosomal DNA containing the 5.8S gene, the internai transcribed spacer region 1 and 2, and partial regions of 18S and 28S gene were amplified by PCR. Digestion of the amplified products of each nematode isolate with twelve restriction endonucleases and examination of resulting RFLP data by cluster analysis revealed a significant gap between B. xylophllus and B. mucronatus. Among the B. xylophilus isolares examined, Japanese pathogenic, Chinese and US isolates were ail identical, whereas Japanese non-pathogenic isolares were slightly distinct and Canadian isolates formed a separate cluster. Among the B. mucronalUS isolates, two Japanese isolares were very similar to each other and another Japanèse and one Chinese isolare were identical to each other. The DNA sequence data revealed 98 differences (nucleotide substitutions or gaps) in 884 bp investigated between B. xylophilus isolare and B. mucronmus isolate; DNA sequence data of Aphelenchus avenae and Aphelenchoides fragariae differed not only from those of Bursaphelenchus nematodes, but also from each other. -
2020.01.27.921304.Full.Pdf
bioRxiv preprint doi: https://doi.org/10.1101/2020.01.27.921304; this version posted January 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 A novel metabarcoding strategy for studying nematode 2 communities 3 4 Md. Maniruzzaman Sikder1, 2, Mette Vestergård1, Rumakanta Sapkota3, Tina Kyndt4, 5 Mogens Nicolaisen1* 6 7 1Department of Agroecology, Aarhus University, Slagelse, Denmark 8 2Department of Botany, Jahangirnagar University, Savar, Dhaka, Bangladesh 9 3Department of Environmental Science, Aarhus University, Roskilde, Denmark 10 4Department of Biotechnology, Ghent University, Ghent, Belgium 11 12 13 *Corresponding author 14 Email: [email protected] 15 16 Abstract 17 Nematodes are widely abundant soil metazoa and often referred to as indicators of soil health. 18 While recent advances in next-generation sequencing technologies have accelerated 19 research in microbial ecology, the ecology of nematodes remains poorly elucidated, partly due 20 to the lack of reliable and validated sequencing strategies. Objectives of the present study 21 were (i) to compare commonly used primer sets and to identify the most suitable primer set 22 for metabarcoding of nematodes; (ii) to establish and validate a high-throughput sequencing 23 strategy for nematodes using Illumina paired-end sequencing. In this study, we tested four 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.01.27.921304; this version posted January 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Transcriptome Profiling of the Root-Knot Nematode Meloidogyne Enterolobii During Parasitism and Identification of Novel Effector Proteins
Ecole Doctorale de Sciences de la Vie et de la Santé Unité de recherche : UMR ISA INRA 1355-UNS-CNRS 7254 Thèse de doctorat Présentée en vue de l’obtention du grade de docteur en Biologie Moléculaire et Cellulaire de L’UNIVERSITE COTE D’AZUR par NGUYEN Chinh Nghia Etude de la régulation du transcriptome de nématodes parasites de plante, les nématodes à galles du genre Meloidogyne Dirigée par Dr. Bruno FAVERY Soutenance le 8 Décembre, 2016 Devant le jury composé de : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis Président Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Rapporteur Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Rapporteur Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinateur Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis Directeur de thèse Doctoral School of Life and Health Sciences Research Unity: UMR ISA INRA 1355-UNS-CNRS 7254 PhD thesis Presented and defensed to obtain Doctor degree in Molecular and Cellular Biology from COTE D’AZUR UNIVERITY by NGUYEN Chinh Nghia Comprehensive Transcriptome Profiling of Root-knot Nematodes during Plant Infection and Characterisation of Species Specific Trait PhD directed by Dr Bruno FAVERY Defense on December 8th 2016 Jury composition : Pr. Pierre FRENDO Professeur, INRA UNS CNRS Sophia-Antipolis President Dr. Marc-Henri LEBRUN Directeur de Recherche, INRA AgroParis Tech Grignon Reporter Dr. Nemo PEETERS Directeur de Recherche, CNRS-INRA Castanet Tolosan Reporter Dr. Stéphane JOUANNIC Chargé de Recherche, IRD Montpellier Examinator Dr. Bruno FAVERY Directeur de Recherche, UNS CNRS Sophia-Antipolis PhD Director Résumé Les nématodes à galles du genre Meloidogyne spp. -
Invasive Species Compendium Detailed Coverage of Invasive Species Threatening Livelihoods and the Environment Worldwide
() Invasive Species Compendium Detailed coverage of invasive species threatening livelihoods and the environment worldwide Filter by type Search Datasheet Additional resources (datasheet/additionalresources/6381? scientificName=Aphelenchoides%20fragariae) Aphelenchoides fragariae (strawberry crimp nematode) Toolbox Invasives Open Data (https://ckan.cabi.org/data/) Horizon Scanning Tool (https://www.cabi.org/HorizonScanningTool) Mobile Apps (https://play.google.com/store/apps/dev?id=8227528954463674373&hl=en_GB) Country Pest Alerts (https://www.plantwise.org/KnowledgeBank/pestalert/signup) Datasheet Aphelenchoides fragariae (strawberry crimp nematode) Index Identity (datasheet/6381#toidentity) Taxonomic Tree (datasheet/6381#totaxonomicTree) Notes on Taxonomy and Nomenclature (datasheet/6381#tonotesOnTaxonomyAndNomenclature) Description (datasheet/6381#todescription) Distribution Table (datasheet/6381#todistributionTable) / Risk of Introduction (datasheet/6381#toriskOfIntroduction) Hosts/Species Affected (datasheet/6381#tohostsOrSpeciesAffected) Host Plants and Other Plants Affected (datasheet/6381#tohostPlants) Growth Stages (datasheet/6381#togrowthStages) Symptoms (datasheet/6381#tosymptoms) List of Symptoms/Signs (datasheet/6381#tosymptomsOrSigns) Biology and Ecology (datasheet/6381#tobiologyAndEcology) Natural enemies (datasheet/6381#tonaturalEnemies) Pathway Vectors (datasheet/6381#topathwayVectors) Plant Trade (datasheet/6381#toplantTrade) Impact (datasheet/6381#toimpact) Detection and Inspection (datasheet/6381#todetectionAndInspection) -
Nematoda: Aphelenchoididae) from Declining Chinese Pine, Pinus Tabuliformis in Beijing, China
JOURNAL OF NEMATOLOGY Article | DOI: 10.21307/jofnem-2020-019 e2020-19 | Vol. 52 Description of Laimaphelenchus sinensis n. sp. (Nematoda: Aphelenchoididae) from declining Chinese pine, Pinus tabuliformis in Beijing, China Jianfeng Gu1,*, Munawar Maria2, Yiwu Fang1, Lele Liu1, Yong Bian3 and Xianfeng Chen1,* Abstract 1Technical Centre of Ningbo Laimaphelenchus sinensis n. sp. isolated from declining Chinese Customs (Ningbo Inspection and pine, Pinus tabuliformis Carrière, is described and characterized Quarantine Science Technology morphologically and molecularly. The new species has four incisures Academy), Huikang No. 8, Ningbo in the lateral field and the excretory pore situated posterior to the 315100, Zhejiang, P.R. China. nerve ring; the female has a vulval flap and vaginal sclerotization is quite prominent in majority of specimens. The female tail is 2Laboratory of Plant Nematology, conoid, ventrally curved having a single stalk-like terminus with Institute of Biotechnology, College 8 to 10 projections. The male spicules are 14.0 (13.2-15) μ m long of Agriculture & Biotechnology, along curved median line and tail is ventrally curved typical of the Zhejiang University, Hangzhou genus; however, the projections are less prominent as compared 310058, Zhejiang, P.R. China. to those of female. The male has two pairs of caudal papillae and 3Technical Centre of Beijing Bursa is absent. Phylogenetically, the ribosomal DNA sequences Customs, No. 6 Tianshuiyuan of the new species placed it within Laimaphelenchus clade and are Street, Chaoyang District, morphologically similar to L. persicus, L. preissii, L. simlaensis and Beijing 100026, P.R. China. L. unituberculus. *E-mails: [email protected]; [email protected] Keywords Laimaphelenchus, Chinese pine, n. -
Aphelenchoides Fragariae
AUG11Pathogen of the month - August 2011 a b c d e Fig. 1. Leaf blotch symptoms on ferns (a), Aphelenchoides fragariae (b), tight aggregation of strawberry crown with malformed leaves (c); tail with blunt spike (d), heavily infested strawberry plant (left) adjacent to asymptomatic plant. Photo credits L. Forsberg (a) and W. O’Neill (b, c, d, e). Common Name: Bud and Leaf Nematode Classification: K: Animalia, P: Nematoda, C: Secernentea, O: Tylenchida, F: Aphelenchoididae Aphelenchoides fragariae is a foliar nematode which has an extensive host range and is widely distributed through the tropical and temperate zones around the world. It is a frequently encountered and economically damaging pest in the foliage plant and nursery industries. As its name suggests, A. fragariae is also a major pest of strawberries worldwide. It has recently been detected in Australian strawberry crops, causing some major losses, whereas historically A. besseyi has caused problems in the Australian industry. This nematode should not be confused with A. ritzemabosi, another bud and leaf nematode that occurs mainly in chrysanthemum, or A. besseyi which causes “crimp disease” in strawberries. (Ritzema Bos, 1890) Christie, 1932 Lifecycle: A. fragariae is an obligate parasite of above On ferns, typical leaf blotch occurs in chevron-like stripes, as ground parts of plants. On strawberries, the nematode is movement seems to be delimited by veins. Leaf blotch symptoms ectoparasitic living in the folded crown and runner buds of on flowering plants appear as water soaked patches which later the plant, with feeding taking place in the folded bud stage. turn brown. A. -
Taxonomy and Identification of Principal Foliar Nematode Species (Aphelenchoides and Litylenchus)
plants Review Taxonomy and Identification of Principal Foliar Nematode Species (Aphelenchoides and Litylenchus) Zafar Handoo *, Mihail Kantor and Lynn Carta Mycology and Nematology Genetic Diversity and Biology Laboratory, USDA, ARS, Northeast Area, Beltsville, MD 20705, USA; [email protected] (M.K.); [email protected] (L.C.) * Correspondence: [email protected] Received: 25 September 2020; Accepted: 2 November 2020; Published: 4 November 2020 Abstract: Nematodes are Earth’s most numerous multicellular animals and include species that feed on bacteria, fungi, plants, insects, and animals. Foliar nematodes are mostly pathogens of ornamental crops in greenhouses, nurseries, forest trees, and field crops. Nematode identification has traditionally relied on morphological and anatomical characters using light microscopy and, in some cases, scanning electron microscopy (SEM). This review focuses on morphometrical and brief molecular details and key characteristics of some of the most widely distributed and economically important foliar nematodes that can aid in their identification. Aphelenchoides genus includes some of the most widely distributed nematodes that can cause crop damages and losses to agricultural, horticultural, and forestry crops. Morphological details of the most common species of Aphelenchoides (A. besseyi, A. bicaudatus, A. fragariae, A. ritzemabosi) are given with brief molecular details, including distribution, identification, conclusion, and future directions, as well as an updated list of the nominal species with its synonyms. Litylenchus is a relatively new genus described in 2011 and includes two species and one subspecies. Species included in the Litylenchus are important emerging foliar pathogens parasitizing trees and bushes, especially beech trees in the United States of America. Brief morphological details of all Litylenchus species are provided. -
Seasonal Stabilities of Soil Nematode Communities and Their Relationships with Environmental Factors in Different Temperate Forest Types on the Chinese Loess Plateau
Article Seasonal Stabilities of Soil Nematode Communities and Their Relationships with Environmental Factors in Different Temperate Forest Types on the Chinese Loess Plateau Na Huo 1, Shiwei Zhao 1,2,3,*, Jinghua Huang 2,3, Dezhou Geng 1, Nan Wang 1 and Panpan Yang 3 1 College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China; [email protected] (N.H.); [email protected] (D.G.); [email protected] (N.W.) 2 State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, China; [email protected] 3 Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling 712100, China; [email protected] * Correspondence: [email protected] Abstract: The bottom-up effects of vegetation have been documented to be strong drivers of the soil food web structure and functioning in temperate forests. However, how the forest type affects the stability of the soil food web is not well known. In the Ziwuling forest region of the Loess Plateau, we selected three typical forests, Pinus tabuliformis Carrière (PT), Betula platyphylla Sukaczev (BP), and Quercus liaotungensis Koidz. (QL), to investigate the soil nematode community characteristics in the dry (April) and rainy (August) season, and analyzed their relationships with the soil properties. The results showed that the characteristics of the soil nematode communities and their seasonal variations Citation: Huo, N.; Zhao, S.; Huang, differed markedly among the forest types. Compared to P. tabuliformis (PT), the B. platyphylla (BP) and J.; Geng, D.; Wang, N.; Yang, P. -
JOURNAL of NEMATOLOGY First Record of Aphelenchoides
JOURNAL OF NEMATOLOGY Article | DOI: 10.21307/jofnem-2019-070 e2019-70 | Vol. 51 First record of Aphelenchoides stammeri (Nematoda: Aphelenchoididae) from Turkey Mehmet Dayi,1* Ece B. Kasapoğlu Uludamar,2 Süleyman Akbulut3 and Abstract 2 İ. Halil Elekcioğlu In previous surveys for the investigation of Bursaphelenchus 1Forestry Vocational School, xylophilus in Turkey, several Bursaphelenchus species, except Düzce University, Düzce, Turkey. B. xylophilus, were detected. To determine the insect vectors of 2 these previously reported Bursaphelenchus species, trap trees of Department of Plant Protection, each pine species (Pinus brutia and P. nigra) were cut and kept in Faculty of Agriculture, Çukurova the field from April to September in 2011.Aphelenchoides stammeri University, Adana, Turkey. was isolated from wood chip samples of P. nigra from Isparta 3Department of Forest Engineering, (Sütçüler). A. stammeri was first identified by using morphological Faculty of Forestry, İzmir Katip features and allometric criteria of females and males. In addition, Çelebi University, İzmir, Turkey. molecular analysis using sequences of 18S and 28S ribosomal (rRNA) genes of A. stammeri was performed. This is the first report *E-mail: [email protected] of A. stammeri from Turkey. This paper was edited by Eyualem Abebe. Keywords Received for publication April 4, Pinus, Survey, Vector, Aphelenchoides stammeri, Detection, Morphology, 2019. Diagnosis. Pine wilt disease, caused by the pinewood nem- been periodically carried out in different geographical atode, Bursaphelenchus xylophilus (Steiner and regions of Turkey since 2003. Buhrer, 1934; Nickle, 1970) (Nematoda: Parasitaph- In 2011, a new project was started to collect the elenchidae), has been leading to extensive damage possible insect vectors of Bursaphelenchus Fuchs in pine forests of eastern Asia (Webster, 1999). -
Supplemental Description of Paraphelenchus Acontioides
Nematology, 2011, Vol. 13(8), 887-899 Supplemental description of Paraphelenchus acontioides (Tylenchida: Aphelenchidae, Paraphelenchinae), with ribosomal DNA trees and a morphometric compendium of female Paraphelenchus ∗ Lynn K. CARTA 1, , Andrea M. SKANTAR 1, Zafar A. HANDOO 1 and Melissa A. BAYNES 2 1 United States Department of Agriculture, ARS-BARC, Nematology Laboratory, Beltsville, MD 20705, USA 2 Department of Forest Ecology and Biogeosciences, University of Idaho, Moscow, ID 83844, USA Received: 30 September 2010; revised: 7 February 2011 Accepted for publication: 7 February 2011; available online: 5 April 2011 Summary – Nematodes were isolated from surface-sterilised stems of cheatgrass, Bromus tectorum (Poaceae), in Colorado, grown on Fusarium (Hypocreaceae) fungus culture, and identified as Paraphelenchus acontioides. Morphometrics and micrographic morphology of this species are given to supplement the original description and expand the comparative species diagnosis. A tabular morphometric compendium of the females of the 23 species of Paraphelenchus is provided as the last diagnostic compilation was in 1984. Variations in the oviduct within the genus are reviewed to evaluate the taxonomic assignment of P. d e cke r i , a morphologically transitional species between Aphelenchus and Paraphelenchus. Sequences were generated for both 18S and 28S ribosomal DNA, representing the first identified species within Paraphelenchus so characterised. These sequences were incorporated into phylogenetic trees with related species of Aphelenchidae and Tylenchidae. Aphelenchus avenae isolates formed a well supported monophyletic sister group to Paraphelenchus. The ecology of Paraphelenchus, cheat grass and Fusarium is also discussed. Keywords – fungivorous nematode, invasive species, key, morphology, molecular, phylogeny, taxonomy. Nematodes of the genus Paraphelenchus Micoletzky, P. -
Expression Profiling and Cross-Species RNA Interference (Rnai) of Desiccation-Induced Transcripts in the Anhydrobiotic Nematode Aphelenchus Avenae
Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae Item Type Journal Article Authors Reardon, Wesley;Chakrabortee, Sohini;Pereira, Tiago C;Tyson, Trevor;Banton, Matthew C;Dolan, Katharine M;Culleton, Bridget A;Wise, Michael J;Burnell, Ann M;Tunnacliffe, Alan Citation BMC Molecular Biology. 2010 Jan 19;11(1):6 Download date 30/09/2021 16:56:04 Link to Item http://dx.doi.org/10.1186/1471-2199-11-6 Find this and similar works at - http://www.lenus.ie/hse Reardon et al. BMC Molecular Biology 2010, 11:6 http://www.biomedcentral.com/1471-2199/11/6 RESEARCH ARTICLE Open Access Expression profiling and cross-species RNA interference (RNAi) of desiccation-induced transcripts in the anhydrobiotic nematode Aphelenchus avenae Wesley Reardon1, Sohini Chakrabortee2†, Tiago Campos Pereira2,3†, Trevor Tyson1†, Matthew C Banton2, Katharine M Dolan1,4, Bridget A Culleton1, Michael J Wise5, Ann M Burnell1*, Alan Tunnacliffe2* Abstract Background: Some organisms can survive extreme desiccation by entering a state of suspended animation known as anhydrobiosis. The free-living mycophagous nematode Aphelenchus avenae can be induced to enter anhydrobiosis by pre-exposure to moderate reductions in relative humidity (RH) prior to extreme desiccation. This preconditioning phase is thought to allow modification of the transcriptome by activation of genes required for desiccation tolerance. Results: To identify such genes, a panel of expressed sequence tags (ESTs) enriched for sequences upregulated in A. avenae during preconditioning was created. A subset of 30 genes with significant matches in databases, together with a number of apparently novel sequences, were chosen for further study. -
Studies on the Morphology and Bio-Ecology of Nematode Fauna of Rewa
STUDIES ON THE MORPHOLOGY AND BIO-ECOLOGY OF NEMATODE FAUNA OF REWA A TMESIS I SUBMITTED FOR THE DEGREE OF DOCTOR OF PHlLOSOPHy IN ZOOLOGY A. P. S. UNIVERSITY. REWA (M. P.) INDIA 1995 MY MANOJ KUMAR SINGH ZOOLOGICAL RESEARCH LAB GOVT. AUTONOMOUS MODEL SCIENCE COLLEGE REWA (M. P.) INDIA La u 4 # s^ ' T5642 - 7 OCT 2002 ^ Dr. C. B. Singh Department of Zoology M Sc, PhD Govt Model Science Coll Professor & Head Rewa(M P ) - 486 001 Ref Date 3^ '^-f^- ^'^ir CERTIFICATE Shri Manoj Kumar Singh, Research Scholar, Department of Zoology, Govt. Model Science College, Rewa has duly completed this thesis entitled "STUDIES ON THE MORPHOLOGY AND BIO-ECOLOGY OF NEMATODE FAUNA OF REWA" under my supervision and guidance He was registered for the degree of Philosophy in Zoology on Jan 11, 1993. Certified that - 1. The thesis embodies the work of the candidate himself 2. The candidate worked under my guidance for the period specified b\ A. P. S. University, Rewa. 3. The work is upto the standard, both from, itscontentsas well as literary presentation point of view. I feel pleasure in commendingthis work to university for the awaid of the degree. (Dr. Co. Singh) or^ra Guide Professor & Head of Zoology department Govt. Model Science College (Autonomous) Rewa (M.P.) DECLARATION The work embodied in this thesis is original and was conducted druing the peirod for Jan. 1993 to July 1995 at the Zoological Research Lab, Govt. Model Science College Rewa, (M.P.) to fulfil the requirement for the degree of Doctor of Philosophy in Zoology from A.P.S.