Assessment of the Antifungal Activity of Non
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Biodiversity of Trichoderma in Neotropics
13 Biodiversity of Trichoderma in Neotropics Lilliana Hoyos-Carvajal1 and John Bissett2 1Universidad Nacional de Colombia, Sede Bogotá 2Agriculture and Agri-Food Canada, Eastern Cereal and Oilseed Research Centre, Ottawa 1Colombia 2Canada 1. Introduction Trichoderma species frequently are predominant over wide geographic regions in all climatic zones, where they are significant decomposers of woody and herbaceous materials. They are characterized by rapid growth, an ability to assimilate a diverse array of substrates, and by their production of an range of antimicrobials. Strains have been exploited for production of enzymes and antibiotics, bioremediation of xenobiotic substances, and as biological control agents against plant pathogenic fungi and nematodes. The main use of Trichoderma in global trade is derived from its high production of enzymes. Trichoderma reesei (teleomorph: Hypocrea jecorina) is the most widely employed cellulolytic organism in the world, although high levels of cellulase production are also seen in other species of this genus (Baig et al., 2003, Watanabe et al., 2006). Worldwide sales of enzymes had reached the figure of $ 1.6 billion by the year 2000 (Demain 2000, cited by Karmakar and Ray, 2011), with an annual growth of 6.5 to 10% not including pharmaceutical enzymes (Stagehands, 2008). Of these, cellulases comprise approximately 20% of the enzymes marketed worldwide (Tramoy et al., 2009). Cellulases of microbial origin are used to process food and animal feed, biofuel production, baking, textiles, detergents, paper pulp, agriculture and research areas at all levels (Karmakar and Ray, 2011). Most cellulases are derived from Trichoderma (section Longibrachiatum in particular) and Aspergillus (Begum et al., 2009). -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
Two New Species and a New Chinese Record of Hypocreaceae As Evidenced by Morphological and Molecular Data
MYCOBIOLOGY 2019, VOL. 47, NO. 3, 280–291 https://doi.org/10.1080/12298093.2019.1641062 RESEARCH ARTICLE Two New Species and a New Chinese Record of Hypocreaceae as Evidenced by Morphological and Molecular Data Zhao Qing Zeng and Wen Ying Zhuang State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, P.R. China ABSTRACT ARTICLE HISTORY To explore species diversity of Hypocreaceae, collections from Guangdong, Hubei, and Tibet Received 13 February 2019 of China were examined and two new species and a new Chinese record were discovered. Revised 27 June 2019 Morphological characteristics and DNA sequence analyses of the ITS, LSU, EF-1a, and RPB2 Accepted 4 July 2019 regions support their placements in Hypocreaceae and the establishments of the new spe- Hypomyces hubeiensis Agaricus KEYWORDS cies. sp. nov. is characterized by occurrence on fruitbody of Hypomyces hubeiensis; sp., concentric rings formed on MEA medium, verticillium-like conidiophores, subulate phia- morphology; phylogeny; lides, rod-shaped to narrowly ellipsoidal conidia, and absence of chlamydospores. Trichoderma subiculoides Trichoderma subiculoides sp. nov. is distinguished by effuse to confluent rudimentary stro- mata lacking of a well-developed flank and not changing color in KOH, subcylindrical asci containing eight ascospores that disarticulate into 16 dimorphic part-ascospores, verticillium- like conidiophores, subcylindrical phialides, and subellipsoidal to rod-shaped conidia. Morphological distinctions between the new species and their close relatives are discussed. Hypomyces orthosporus is found for the first time from China. 1. Introduction Members of the genus are mainly distributed in temperate and tropical regions and economically The family Hypocreaceae typified by Hypocrea Fr. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Hypocrea Stilbohypoxyli and Its Trichoderma Koningii-Like Anamorph: a New Species from Puerto Rico on Stilbohypoxylon Moelleri
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Sydowia Jahr/Year: 2003 Band/Volume: 55 Autor(en)/Author(s): Lu Bingsheng, Samuels Gary J. Artikel/Article: Hypocrea stilbohypoxyli and its Trichoderma koningii-like anamorph: a new species from Puerto Rico on Stilbohypoxylon moelleri. 255-266 ©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.biologiezentrum.at Hypocrea stilbohypoxyli and its Trichoderma koningii-like anamorph: a new species from Puerto Rico on Stilbohypoxylon moelleri Bingsheng Lu1* & Gary J. Samuels2 1 Department of Plant Pathology, Agronomy College, Shanxi Agricultural University, Taigu, Shanxi 030801, China 2 USDA-ARS, Systematic Botany and Mycology Laboratory, Rm.304, B-011A, BARC-West, Beltsville, Maryland 20705-2350, USA Lu, B. S. & G. J. Samuels (2003). Hypocrea stilbohypoxyli and its Tricho- derma koningii-like anamorph: a new species from Puerto Rico on Stilbohypoxylon moelleri. - Sydowia 55 (2): 255-266. The new species Hypocrea stilbohypoxyli and its Trichoderma anamorph are described. The species is known only from Puerto Rico where it grows on stromata of Stilbohypoxylon moelleri (Xylariales, Xylariaceae). Hypocrea stilbohypoxyli is readily distinguished from the morphologically most similar H. koningii/T. koningii by its substratum and slower growth rate, which is especially evident on SNA. Stromata are morphologically very similar to those of H. koningii and H. rufa. The anamorph is morphologically close to T. koningii, differing from T! koningii in having somewhat shorter and wider conidia. Hypocrea stilbohypoxyli differs from H. koningii/T. koningii in 3 bp in ITS-1 and 2 bp in ITS-2 sequences. -
Trichoderma: the “Secrets” of a Multitalented Biocontrol Agent
plants Review Trichoderma: The “Secrets” of a Multitalented Biocontrol Agent 1, 1, 2 3 Monika Sood y, Dhriti Kapoor y, Vipul Kumar , Mohamed S. Sheteiwy , Muthusamy Ramakrishnan 4 , Marco Landi 5,6,* , Fabrizio Araniti 7 and Anket Sharma 4,* 1 School of Bioengineering and Biosciences, Lovely Professional University, Jalandhar-Delhi G.T. Road (NH-1), Phagwara, Punjab 144411, India; [email protected] (M.S.); [email protected] (D.K.) 2 School of Agriculture, Lovely Professional University, Delhi-Jalandhar Highway, Phagwara, Punjab 144411, India; [email protected] 3 Department of Agronomy, Faculty of Agriculture, Mansoura University, Mansoura 35516, Egypt; [email protected] 4 State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China; [email protected] 5 Department of Agriculture, University of Pisa, I-56124 Pisa, Italy 6 CIRSEC, Centre for Climatic Change Impact, University of Pisa, Via del Borghetto 80, I-56124 Pisa, Italy 7 Dipartimento AGRARIA, Università Mediterranea di Reggio Calabria, Località Feo di Vito, SNC I-89124 Reggio Calabria, Italy; [email protected] * Correspondence: [email protected] (M.L.); [email protected] (A.S.) Authors contributed equal. y Received: 25 May 2020; Accepted: 16 June 2020; Published: 18 June 2020 Abstract: The plant-Trichoderma-pathogen triangle is a complicated web of numerous processes. Trichoderma spp. are avirulent opportunistic plant symbionts. In addition to being successful plant symbiotic organisms, Trichoderma spp. also behave as a low cost, effective and ecofriendly biocontrol agent. They can set themselves up in various patho-systems, have minimal impact on the soil equilibrium and do not impair useful organisms that contribute to the control of pathogens. -
Silver Scurf Begins Belowground on Potatoes in Western Washington
SILVER SCURF BEGINS BELOWGROUND ON POTATOES IN WESTERN WASHINGTON Debra Ann Inglis, Professor Emerita, WSU Mount Vernon NWREC, Washington State University; and Babette Gundersen, Senior Scientific Assistant, WSU Mount Vernon NWREC, Washington State University TB61E WSU EXTENSION | SILVER SCURF BEGINS BELOWGROUND ON POTATOES IN WESTERN WASHINGTON SILVER SCURF BEGINS BELOWGROUND ON POTATOES IN WESTERN WASHINGTON Abstract In western Washington, which has a mild marine climate where silver scurf can be severe on Photographs of multiple sporulation and infection- susceptible smooth-skinned potato cultivars and cycle events on decaying seed potato pieces, where some of these fungicide evaluations have including the roots, stolons, and progeny tubers of occurred, seed piece fungicides, although helpful, potato plants, indicate that silver scurf caused by have not yet been able to eliminate the disease. Helminthosporium solani is a polycyclic disease, Especially puzzling is that even with a low number belowground, on potatoes in western Washington, of lesions on tubers, sporulation by the fungus can be warranting new approaches for disease control. high, as was shown in a two-year field study at WSU Mount Vernon NWREC (Table 1). Moreover, it has Introduction been established in several areas, including western Washington (Table 2), that extended periods Specialty potato growers in western Washington between vine kill and harvest can lead to increasing seek better measures for controlling silver scurf on levels of silver scurf infections and that, oftentimes, smooth-skinned red, yellow, and white potatoes. progeny tubers may already be infected before going Quality is an important issue for fresh market and into storage. seed potato sales, and smooth-skinned cultivars are thought to be more severely damaged than Russet- Many facets of the silver scurf disease cycle in skinned cultivars. -
Microorganisms
microorganisms Review Bioactive Secondary Metabolites from Trichoderma spp. against Phytopathogenic Fungi Raja Asad Ali Khan 1 , Saba Najeeb 1, Shaukat Hussain 2, Bingyan Xie 1,* and Yan Li 1,* 1 Institute of Vegetables and Flowers (Plant Pathology Lab), Chinese Academy of Agricultural Sciences, Beijing 100081, China; [email protected] (R.A.A.K.); [email protected] (S.N.) 2 Department of Plant Pathology, The University of Agriculture Peshawar, Peshawar 25130, Pakistan; [email protected] * Correspondence: [email protected] (B.X.); [email protected] (Y.L.) Received: 2 April 2020; Accepted: 28 May 2020; Published: 29 May 2020 Abstract: Phytopathogenic fungi, causing significant economic and production losses, are becoming a serious threat to global food security. Due to an increase in fungal resistance and the hazardous effects of chemical fungicides to human and environmental health, scientists are now engaged to explore alternate non-chemical and ecofriendly management strategies. The use of biocontrol agents and their secondary metabolites (SMs) is one of the potential approaches used today. Trichoderma spp. are well known biocontrol agents used globally. Many Trichoderma species are the most prominent producers of SMs with antimicrobial activity against phytopathogenic fungi. Detailed information about these secondary metabolites, when grouped together, enhances the understanding of their efficient utilization and further exploration of new bioactive compounds for the management of plant pathogenic fungi. The current literature provides the information about SMs of Trichoderma spp. in a different context. In this review, we summarize and group different antifungal SMs of Trichoderma spp. against phytopathogenic fungi along with a comprehensive overview of some aspects related to their chemistry and biosynthesis. -
Helminthosporium Velutinum and H. Aquaticum Sp. Nov. from Aquatic Habitats in Yunnan Province, China
Phytotaxa 253 (3): 179–190 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2016 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.253.3.1 Helminthosporium velutinum and H. aquaticum sp. nov. from aquatic habitats in Yunnan Province, China DAN ZHU1, ZONG-LONG LUO1,2, DARBHE JAYARAMA BAHT3, ERICH.C. MCKENZIE4, ALI H. BAHKALI5, DE-QUN ZHOU6, HONG-YAN SU1,6 & KEVIN D. HYDE2,3,5 1College of Agriculture and Biology, Dali University, Dali, Yunnan 671003, China. 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand. 3Formerly at Department of Botany, Goa University, Goa, 403206, India. 4Landcare Research, Private Bag 92170, Auckland, New Zealand. 5Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, KSA. 6Faculty of Environmental Sciences & Engineering, Kunming University of Science & Technology, Kunming 650500, Yunnan, China. Corresponding author: Hong-yan Su, email: [email protected] Abstract Helminthosporium species from submerged wood in streams in Yunnan Province, China were studied based on morphology and DNA sequence data. Descriptions and illustrations of Helminthosporium velutinum and a new species H. aquaticum are provided. A combined phylogenetic tree, based on SSU, ITS and LSU sequence data, place the species in Massarinaceae, Pleosporales. The polyphyletic nature of Helminthosporium species within Massarinaceae is shown based on ITS sequence data available in GenBank. Key words: aquatic fungi, Dothideomycetes, Massarinaceae, phylogeny, morphology Introduction The genus Helminthosporium Link was previously considered to be a widely distributed genus of dematiaceous hyphomycetes occurring on a wide range of hosts (Dreschler 1934, Ellis 1960, 1971, Manamgoda et al. -
Alternatively Spliced, Spliceosomal Twin Introns in Helminthosporium
Fungal Genetics and Biology 85 (2015) 7–13 Contents lists available at ScienceDirect Fungal Genetics and Biology journal homepage: www.elsevier.com/locate/yfgbi Alternatively spliced, spliceosomal twin introns in Helminthosporium solani ⇑ Norbert Ág a, Michel Flipphi a, , Levente Karaffa a, Claudio Scazzocchio b,c, Erzsébet Fekete a a Dept. of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, H-4032 Debrecen, Hungary b Dept. of Microbiology, Imperial College, London SW7 2AZ, United Kingdom c Institut de Biologie Intégrative de la Cellule (I2BC), UMR CEA/CNRS/Université Paris-Sud, 91405 Orsay Cedex, France article info abstract Article history: Spliceosomal twin introns, ‘‘stwintrons”, have been defined as complex intervening sequences that carry Received 16 August 2015 a second intron (‘‘internal intron”) interrupting one of the conserved sequence domains necessary for Revised 23 October 2015 their correct splicing via consecutive excision events. Previously, we have described and experimentally Accepted 24 October 2015 verified stwintrons in species of Sordariomycetes, where an ‘‘internal intron” interrupted the donor Available online 26 October 2015 sequence of an ‘‘external intron”. Here we describe and experimentally verify two novel stwintrons of the potato pathogen Helminthosporium solani. One instance involves alternative splicing of an internal Keywords: intron interrupting the donor domain of an external intron and a second one interrupting the acceptor Spliceosomal twin introns domain of an overlapping external intron, both events leading to identical mature mRNAs. In the second Sequential splicing Alternative splicing case, an internal intron interrupts the donor domain of the external intron, while an alternatively spliced Premature stop codon intron leads to an mRNA carrying a premature chain termination codon. -
Biocontrol Efficacy and Other Characteristics of Protoplast Fusants
Mycol. Res. 106 (3): 321–328 (March 2002). # The British Mycological Society 321 DOI: 10.1017\S0953756202005592 Printed in the United Kingdom. Biocontrol efficacy and other characteristics of protoplast fusants between Trichoderma koningii and T. virens Linda E. HANSON1* and Charles R. HOWELL2 " USDA-ARS Sugar Beet Research Unit, Crops Research Laboratory, 1701 Centre Avenue, Fort Collins, CO 80526, USA. # USDA-ARS SPARC, Cotton Pathology Research Unit, 2765 F&B Road, College Station, TX 77845, USA. E-mail: lehanson!lamar.colostate.edu Received 8 February 2001; accepted 29 October 2001. Several Trichoderma virens (syn. Gliocladium virens) strains have good biocontrol activity against Rhizoctonia solani on cotton but lack some of the commercially desirable characteristics found in other Trichoderma species. In an attempt to combine these desirable characteristics, we used a highly effective biocontrol strain of T. virens in protoplast fusions with a strain of T. koningii, which had good storage qualities, but little biocontrol efficacy. All fusants were morphologically similar to one of the parental species. However, when compared to the morphologically similar T. koningii parent, two fusants showed significantly better biocontrol activity against R. solani on cotton. In addition, one T. virens-like fusant gave significantly less control than the T. virens parent. Fusants also differed from the morphologically similar parent in the production of secondary metabolites. One fusant was obtained which maintained biocontrol activity during storage for up to a year. INTRODUCTION between organisms that cannot undergo sexual re- combination (Pe’er & Chet 1990). Protoplast fusions Biocontrol of plant diseases offers many benefits in have been performed with Trichoderma species for disease management. -
Chemotaxonomy of Trichoderma Spp. Using Mass Spectrometry-Based Metabolite Profiling
J. Microbiol. Biotechnol. (2011), 21(1), 5–13 doi: 10.4014/jmb.1008.08018 First published online 19 November 2010 Chemotaxonomy of Trichoderma spp. Using Mass Spectrometry-Based Metabolite Profiling Kang, Daejung1, Jiyoung Kim1, Jung Nam Choi1, Kwang-Hyeon Liu2, and Choong Hwan Lee1* 1Department of Bioscience and Biotechnology, Kon-Kuk University, Seoul 143-701, Korea 2Department of Pharmacology and PharmacoGenomics Research Center, Inje University College of Medicine, Busan 614-735, Korea Received: August 17, 2010 / Revised: September 20, 2010 / Accepted: September 28, 2010 In this study, seven Trichoderma species (33 strains) were Members of Trichoderma are the most common saprophytic classified using secondary metabolite profile-based fungi and are found in almost all agriculture soils chemotaxonomy. Secondary metabolites were analyzed by worldwide. The genus was identified 200 years ago by liquid chromatography-electrospray ionization tandem Persoon (1794), and approximately 130 species have been mass spectrometry (LC-ESI-MS-MS) and multivariate classified [4]. Certain species of Trichoderma have been statistical methods. T. longibrachiatum and T. virens were known to produce important secondary metabolites such independently clustered based on both internal transcribed as antibiotics, plant growth regulators, and mycotoxins, spacer (ITS) sequence and secondary metabolite analyses. which are mainly used to protect plants from pathogens T. harzianum formed three subclusters in the ITS-based [21, 22, 26]. In fact, T. harzianum and T. atroviride are phylogenetic tree and two subclusters in the metabolite- commercially used as biocontrol agents [27]. The compounds based dendrogram. In contrast, T. koningii and T. atroviride produced by some Trichoderma species are harmful to strains were mixed in one cluster in the phylogenetic tree, animals.