A Comparative Study of Head Development in Mexican Axolotl and Australian Lungfish: Cell Migration, Cell Fate and Morphogenesis
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Identification of Mutant Genes and Introgressed Tiger Salamander
www.nature.com/scientificreports OPEN Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Received: 13 October 2016 Accepted: 19 December 2016 Ambystoma mexicanum Published: xx xx xxxx M. Ryan Woodcock1, Jennifer Vaughn-Wolfe1, Alexandra Elias2, D. Kevin Kump1, Katharina Denise Kendall1,5, Nataliya Timoshevskaya1, Vladimir Timoshevskiy1, Dustin W. Perry3, Jeramiah J. Smith1, Jessica E. Spiewak4, David M. Parichy4,6 & S. Randal Voss1 The molecular genetic toolkit of the Mexican axolotl, a classic model organism, has matured to the point where it is now possible to identify genes for mutant phenotypes. We used a positional cloning– candidate gene approach to identify molecular bases for two historic axolotl pigment phenotypes: white and albino. White (d/d) mutants have defects in pigment cell morphogenesis and differentiation, whereas albino (a/a) mutants lack melanin. We identified in white mutants a transcriptional defect in endothelin 3 (edn3), encoding a peptide factor that promotes pigment cell migration and differentiation in other vertebrates. Transgenic restoration of Edn3 expression rescued the homozygous white mutant phenotype. We mapped the albino locus to tyrosinase (tyr) and identified polymorphisms shared between the albino allele (tyra) and tyr alleles in a Minnesota population of tiger salamanders from which the albino trait was introgressed. tyra has a 142 bp deletion and similar engineered alleles recapitulated the albino phenotype. Finally, we show that historical introgression of tyra significantly altered genomic composition of the laboratory axolotl, yielding a distinct, hybrid strain of ambystomatid salamander. Our results demonstrate the feasibility of identifying genes for traits in the laboratory Mexican axolotl. The Mexican axolotl (Ambystoma mexicanum) is the primary salamander model in biological research. -
RESPIRATORY CONTROL in the LUNGFISH, NEOCERATODUS FORSTERI (KREFT) KJELL JOHANSEN, CLAUDE LENFANT and GORDON C
Comp. Biochem. Physiol., 1967, Vol. 20, pp. 835-854 RESPIRATORY CONTROL IN THE LUNGFISH, NEOCERATODUS FORSTERI (KREFT) KJELL JOHANSEN, CLAUDE LENFANT and GORDON C. GRIGG Abstract-1. Respiratory control has been studied in the lungfish, Neoceratodus forsteri by measuring ventilation (Ve), oxygen uptake (VO2), per cent O2 extraction from water, breathing rates of branchial and aerial respiration and changes in blood gas and pulmonary gas composition during exposure to hypoxia and hypercarbia. 2. Hypoxic water represents a strong stimulus for compensatory increase in both branchial and aerial respiration. Water ventilation increases by a factor of 3 or 4 primarily as a result of increased depth of breathing. 3. The ventilation perfusion ratio decreased during hypoxia because of a marked increase in cardiac output. Hypoxia also increased the fraction of total blood flow perfusing the lung. Injection of nitrogen into the lung evoked no compensatory changes. 4. It is concluded that the chemoreceptors eliciting the compensatory changes are located on the external side facing the ambient water or in the efferent branchial blood vessels. 5. Elevated pCO2 in the ambient water depressed the branchial respiration but stimulated aerial respiration. 6. It is suggested that the primary regulatory effect of the response to increased ambient pCO2 is to prevent CO2 from entering the animal, while the secondary stimulation of air breathing is caused by hypoxic stimulation of chemoreceptors located in the efferent branchial vessels. INTRODUCTION I t i s generally accepted that vertebrates acquired functional lungs before they possessed a locomotor apparatus for invasion of a terrestrial environment. Shortage of oxygen in the environment is thought to have been the primary driving force behind the development of auxiliary air breathing. -
An Introduction to the Classification of Elasmobranchs
An introduction to the classification of elasmobranchs 17 Rekha J. Nair and P.U Zacharia Central Marine Fisheries Research Institute, Kochi-682 018 Introduction eyed, stomachless, deep-sea creatures that possess an upper jaw which is fused to its cranium (unlike in sharks). The term Elasmobranchs or chondrichthyans refers to the The great majority of the commercially important species of group of marine organisms with a skeleton made of cartilage. chondrichthyans are elasmobranchs. The latter are named They include sharks, skates, rays and chimaeras. These for their plated gills which communicate to the exterior by organisms are characterised by and differ from their sister 5–7 openings. In total, there are about 869+ extant species group of bony fishes in the characteristics like cartilaginous of elasmobranchs, with about 400+ of those being sharks skeleton, absence of swim bladders and presence of five and the rest skates and rays. Taxonomy is also perhaps to seven pairs of naked gill slits that are not covered by an infamously known for its constant, yet essential, revisions operculum. The chondrichthyans which are placed in Class of the relationships and identity of different organisms. Elasmobranchii are grouped into two main subdivisions Classification of elasmobranchs certainly does not evade this Holocephalii (Chimaeras or ratfishes and elephant fishes) process, and species are sometimes lumped in with other with three families and approximately 37 species inhabiting species, or renamed, or assigned to different families and deep cool waters; and the Elasmobranchii, which is a large, other taxonomic groupings. It is certain, however, that such diverse group (sharks, skates and rays) with representatives revisions will clarify our view of the taxonomy and phylogeny in all types of environments, from fresh waters to the bottom (evolutionary relationships) of elasmobranchs, leading to a of marine trenches and from polar regions to warm tropical better understanding of how these creatures evolved. -
The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom
lopmen ve ta e l B Williamson, Cell Dev Biol 2012, 1:1 D io & l l o l g DOI: 10.4172/2168-9296.1000101 e y C Cell & Developmental Biology ISSN: 2168-9296 Research Article Open Access The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom Abstract The larval transfer hypothesis states that larvae originated as adults in other taxa and their genomes were transferred by hybridization. It contests the view that larvae and corresponding adults evolved from common ancestors. The present paper reviews the life histories of chordates, and it interprets them in terms of the larval transfer hypothesis. It is the first paper to apply the hypothesis to craniates. I claim that the larvae of tunicates were acquired from adult larvaceans, the larvae of lampreys from adult cephalochordates, the larvae of lungfishes from adult craniate tadpoles, and the larvae of ray-finned fishes from other ray-finned fishes in different families. The occurrence of larvae in some fishes and their absence in others is correlated with reproductive behavior. Adult amphibians evolved from adult fishes, but larval amphibians did not evolve from either adult or larval fishes. I submit that [1] early amphibians had no larvae and that several families of urodeles and one subfamily of anurans have retained direct development, [2] the tadpole larvae of anurans and urodeles were acquired separately from different Mesozoic adult tadpoles, and [3] the post-tadpole larvae of salamanders were acquired from adults of other urodeles. Reptiles, birds and mammals probably evolved from amphibians that never acquired larvae. -
Function of the Respiratory System - General
Lesson 27 Lesson Outline: Evolution of Respiratory Mechanisms – Cutaneous Exchange • Evolution of Respiratory Mechanisms - Water Breathers o Origin of pharyngeal slits from corner of mouth o Origin of skeletal support/ origin of jaws o Presence of strainers o Origin of gills o Gill coverings • Form - Water Breathers o Structure of Gills Chondrichthyes Osteichthyes • Function – Water Breathers o Pumping action and path of water flow Chondrichthyes Osteichthyes Objectives: At the end of this lesson you should be able to: • Describe the evolutionary trends seen in respiratory mechanisms in water breathers • Describe the structure of the different types of gills found in water breathers • Describe the pumping mechanisms used to move water over the gills in water breathers References: Chapter 13: pgs 292-313 Reading for Next Lesson: Chapter 13: pgs 292-313 Function of the Respiratory System - General Respiratory Organs Cutaneous Exchange Gas exchange across the skin takes place in many vertebrates in both air and water. All that is required is a good capillary supply, a thin exchange barrier and a moist outer surface. As you will remember from lectures on the integumentary system, this is often in conflict with the other functions of the integument. Cutaneous respiration is utilized most extensively in amphibians but is not uncommon in fish and reptiles. It is not used extensively in birds or mammals, although there are instances where it can play an important role (bats loose 12% of their CO2 this way). For the most part, it: - plays a larger role in smaller animals (some small salamanders are lungless). - requires a moist skin which is thin, has a high capillary density and no thick keratinised outer layer. -
Axolotl Care Compiled by Dayna Willems, DVM
Axolotl Care Compiled by Dayna Willems, DVM Brief Description Axolotls (Ambystoma mexicanum) are a Mexican species of aquatic salamander that has rapidly come into the pet trade due to their hardy nature and unusual appearance. Axolotls are amphibians meaning that they do go through several stages of metamorphosis before reaching their adult form. Axolotls are unusual in that their adult/reproductive stage is the same as the juvenile aquatic stage. This is called neoteny and is often considered a “backward” step in evolution. Axolotls are closely related to Tiger Salamanders which do eventually morph into a terrestrial form. It should be noted that under extreme stress, an axolotl may morph into a terrestrial form, but their life is significantly shortened. Being amphibians, axolotls do not tolerate handling well and must stay in the water to breathe. They have sensitive skin and can absorb toxins from the water or your skin. Should you need to transport your axolotl or move it for tank maintenance, do not use a net. Nets can cause abrasions in your axolotl’s sensitive skin or damage the gills. Instead use a plastic cup to scoop your axolotl out of the enclosure. Lifespan Providing the correct care to your axolotl will ensure a long life. Average life expectancy is around 10 years, but reports have been found of axolotls living into their 20’s. Their adult size is around 10 to 12 inches; which they typically reach within the first year of their life. Sexing Axolotls reach sexual maturity when they are around 6-8 inches long. -
Chondrichthyes:Elasmobranchi)
Dissertação de Mestrado Lucas Romero de Oliveira Anatomia comparada e importância filogenética da musculatura branquial em tubarões da superordem Galeomorphi (Chondrichthyes:Elasmobranchi) Comparative anatomy and phylogenetic importance of the branchial musculature in sharks of the superorder Galeomorphi (Chondrichthyes:Elasmobranchi) Instituto de Biociências – Universidade de São Paulo São Paulo Novembro de 2017 1 Dissertação de Mestrado Lucas Romero de Oliveira Anatomia comparada e importância filogenética da musculatura branquial em tubarões da superordem Galeomorphi (Chondrichthyes:Elasmobranchi) Compartive anatomy and phylogenetic importance of the branchial musculature in sharks of the superorder Galeomorphi (Chondrichthyes:Elasmobranchi) Dissertação apresentada ao Instituto de Biociências da Universidade de São Paulo para a obtenção de Título de Mestre em Zoologia, na Área de Anatomia comparada Supervisora: Mônica de Toledo Piza Ragazzo Instituto de Biociências – Universidade de São Paulo São Paulo Novembro de 2017 2 Introduction Extant sharks are currently divided into two monophyletic groups based on morphological (Compagno, 1977; Shirai, 1992a, 1992b, 1996; de Carvalho, 1996; de Carvalho & Maisey, 1996) and molecular (Douady et al., 2003; Winchell et al. 2004; Naylor et al., 2005, 2012; Human et al., 2006; Heinicke et al., 2009)data: Galeomorphi and Squalomorphi. Molecular data support that rays, forming a group named Batoidea, are the sister-group to a clade comprising both galeomorph and squalomorph sharks. Results from many older morphological studies also considered both body plans (sharks and rays) as indicative of monophyletic groups, but some recent works based on morphological data suggested that rays form a monophyletic group nested within squalomorph sharks (Shirai, 1992; de Carvalho & Maisey, 1996; de Carvalho, 1996). In studies based on both types of dataset, the Galeomorphi comprehend only shark groups. -
Sight for Sore Eyes: Ancient Fish See Colour 19 September 2005
Sight for sore eyes: ancient fish see colour 19 September 2005 The Australian lungfish - one of the world’s oldest pigments, are bigger in lungfish than for any other fishes and related to our ancient ancestors - may animal with a backbone. This probably makes them have been viewing rivers in technicolour long more sensitive to light. before dinosaurs roamed the Earth. “We keep discovering ways in which these animals Recent work by postgraduate student Helena are quite different from other fish,” Helena says. Bailes at the University of Queensland Australia, “Their eyes seem designed to optimise both has found these unusual fish have genes for five sensitivity and colour vision with large cells different forms of visual pigment in their eyes. containing different visual pigments.” Humans only have three. She now is hoping that behavioural research can Helena is one of 13 early-career researchers who find out how these fish are using their eyes for have presented their work to the public and the colour vision in the wild. media for the first time as part of the national program Fresh Science. “We may then learn what Queensland rivers look like to some of their oldest inhabitants, before those Night and day (colour) vision are controlled by inhabitants are wiped out,” Bailes says. different light sensing cells known respectively as rods and cones. Humans have a single type of rod and three types of cone, each containing a different pigment gene tuned to red, green and blue wavelengths. Lungfish possess two additional pigments that were lost in mammals, Bailes says. -
FROGLOG Newsletter of the IUCN /SSC Amphibian Specialist Group (ASG)
Ambystoma opacum byTim Halliday ISSN 1026-0269 FROGLOG Newsletter of the IUCN /SSC Amphibian Specialist Group (ASG) December 2006, Number 78 amphibian species entering ponds individuals. Computer assisted Impacts of from clearcut versus forest habitats pattern-matching software clearcutting on across years. Of the 149,756 developed specifically for A. amphibians amphibians that were captured opacum by Lex Hiby of after 20 years and included in our analysis, 17 of Conservation Research Ltd. of forest re- 18 species at all ponds in all years (Cambridge, UK) drastically establishment migrated to ponds in significantly reduced the number of photo By: Don R. Church, Henry M. smaller numbers from the clearcut comparisons that needed to be Wilbur and Larissa Bailey habitats than from the forest made by eye. Individuals had habitats associated with each overall high fidelity to their point of The long-term impacts of forestry pond. The one exception was the entry to and exit from a pond within practices on amphibian spring peeper, Hyla crucifer, which and across years. populations remain uncertain. was caught in significantly larger Using recently developed multi- Several studies in eastern North numbers entering from the clearcut state mark-recapture methods America have previously shown habitat at each pond. These (Bailey et al., 2004) and that clearcutting of upland forests results raised the question: Why multimodel inference (Burnham & results in a reduction in the number exactly do fewer amphibians Anderson, 2002) we found that of pond-breeding amphibians that migrate to ponds from clearcut survival probabilities within both migrate to breeding sites. habitats after 20 years of forest breeding and non-breeding However, in general, deciduous reestablishment? The answer to seasons varied among years, forests of eastern North America this question has important populations, and between habitats. -
Hearing Sensitivity and the Effect of Sound Exposure on the Axolotl (Ambystoma Mexicanum) Amy K
Western Kentucky University TopSCHOLAR® Masters Theses & Specialist Projects Graduate School 5-2015 Hearing Sensitivity and the Effect of Sound Exposure on the Axolotl (Ambystoma Mexicanum) Amy K. Fehrenbach Western Kentucky University, [email protected] Follow this and additional works at: http://digitalcommons.wku.edu/theses Part of the Biology Commons, and the Cell and Developmental Biology Commons Recommended Citation Fehrenbach, Amy K., "Hearing Sensitivity and the Effect of Sound Exposure on the Axolotl (Ambystoma Mexicanum)" (2015). Masters Theses & Specialist Projects. Paper 1496. http://digitalcommons.wku.edu/theses/1496 This Thesis is brought to you for free and open access by TopSCHOLAR®. It has been accepted for inclusion in Masters Theses & Specialist Projects by an authorized administrator of TopSCHOLAR®. For more information, please contact [email protected]. HEARING SENSITIVITY AND THE EFFECT OF SOUND EXPOSURE ON THE AXOLOTL (AMBYSTOMA MEXICANUM) A Thesis Presented to The Faculty of the Department of Biology Western Kentucky University Bowling Green, Kentucky In Partial Fulfillment Of the Requirements for the Degree Master of Science By Amy K Fehrenbach May 2015 2 I dedicate this thesis to my parents, Paul and Debbie Fehrenbach. Your love and support have made all of this possible, and I could not have done it without you. Thank you for everything. ACKNOWLEDGMENTS I would first like to thank Dr. Michael Smith for mentoring and advising me throughout my time at WKU. His guidance, work ethic, and positive attitude have made this project possible. I would also like to thank my committee members Dr. Steve Huskey and Dr. Wieb van der Meer for their feedback and patience during this process. -
Syndromes of the First and Second Branchial Arches, Part 1: Embryology and Characteristic REVIEW ARTICLE Defects
Syndromes of the First and Second Branchial Arches, Part 1: Embryology and Characteristic REVIEW ARTICLE Defects J.M. Johnson SUMMARY: A variety of congenital syndromes affecting the face occur due to defects involving the G. Moonis first and second BAs. Radiographic evaluation of craniofacial deformities is necessary to define aberrant anatomy, plan surgical procedures, and evaluate the effects of craniofacial growth and G.E. Green surgical reconstructions. High-resolution CT has proved vital in determining the nature and extent of R. Carmody these syndromes. The radiologic evaluation of syndromes of the first and second BAs should begin H.N. Burbank first by studying a series of isolated defects: CL with or without CP, micrognathia, and EAC atresia, which compose the major features of these syndromes and allow more specific diagnosis. After discussion of these defects and the associated embryology, we proceed to discuss the VCFS, PRS, ACS, TCS, Stickler syndrome, and HFM. ABBREVIATIONS: ACS ϭ auriculocondylar syndrome; BA ϭ branchial arch; CL ϭ cleft lip; CL/P ϭ cleft lip/palate; CP ϭ cleft palate; EAC ϭ external auditory canal; HFM ϭ hemifacial microsomia; MDCT ϭ multidetector CT; PRS ϭ Pierre Robin sequence; TCS ϭ Treacher Collins syndrome; VCFS ϭ velocardiofacial syndrome adiographic evaluation of craniofacial deformities is nec- major features of the syndromes of the first and second BAs. Ressary to define aberrant anatomy, plan surgical proce- Part 2 of this review discusses the syndromes and their radio- dures, and evaluate the effects of craniofacial growth and sur- graphic features: PRS, HFM, ACS, TCS, Stickler syndrome, gical reconstructions.1 The recent rapid proliferation of and VCFS. -
BMC Ecology Biomed Central
BMC Ecology BioMed Central Research article Open Access Visual ecology of the Australian lungfish (Neoceratodus forsteri) Nathan S Hart*1, Helena J Bailes1,2, Misha Vorobyev1,3, N Justin Marshall1 and Shaun P Collin1 Address: 1School of Biomedical Sciences, The University of Queensland, Brisbane, QLD 4072, Australia, 2Faculty of Life Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK and 3Department of Optometry and Vision Science, The University of Auckland, Private Bag 92019, Auckland, New Zealand Email: Nathan S Hart* - [email protected]; Helena J Bailes - [email protected]; Misha Vorobyev - [email protected]; N Justin Marshall - [email protected]; Shaun P Collin - [email protected] * Corresponding author Published: 18 December 2008 Received: 27 August 2008 Accepted: 18 December 2008 BMC Ecology 2008, 8:21 doi:10.1186/1472-6785-8-21 This article is available from: http://www.biomedcentral.com/1472-6785/8/21 © 2008 Hart et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: The transition from water to land was a key event in the evolution of vertebrates that occurred over a period of 15–20 million years towards the end of the Devonian. Tetrapods, including all land-living vertebrates, are thought to have evolved from lobe-finned (sarcopterygian) fish that developed adaptations for an amphibious existence.