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Transcriptional Control of Tissue-Resident Memory T Cell Generation
Transcriptional control of tissue-resident memory T cell generation Filip Cvetkovski Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2019 © 2019 Filip Cvetkovski All rights reserved ABSTRACT Transcriptional control of tissue-resident memory T cell generation Filip Cvetkovski Tissue-resident memory T cells (TRM) are a non-circulating subset of memory that are maintained at sites of pathogen entry and mediate optimal protection against reinfection. Lung TRM can be generated in response to respiratory infection or vaccination, however, the molecular pathways involved in CD4+TRM establishment have not been defined. Here, we performed transcriptional profiling of influenza-specific lung CD4+TRM following influenza infection to identify pathways implicated in CD4+TRM generation and homeostasis. Lung CD4+TRM displayed a unique transcriptional profile distinct from spleen memory, including up-regulation of a gene network induced by the transcription factor IRF4, a known regulator of effector T cell differentiation. In addition, the gene expression profile of lung CD4+TRM was enriched in gene sets previously described in tissue-resident regulatory T cells. Up-regulation of immunomodulatory molecules such as CTLA-4, PD-1, and ICOS, suggested a potential regulatory role for CD4+TRM in tissues. Using loss-of-function genetic experiments in mice, we demonstrate that IRF4 is required for the generation of lung-localized pathogen-specific effector CD4+T cells during acute influenza infection. Influenza-specific IRF4−/− T cells failed to fully express CD44, and maintained high levels of CD62L compared to wild type, suggesting a defect in complete differentiation into lung-tropic effector T cells. -
Role of S100A8/A9 for Cytokine Secretion, Revealed in Neutrophils Derived from ER-Hoxb8 Progenitors
International Journal of Molecular Sciences Article Role of S100A8/A9 for Cytokine Secretion, Revealed in Neutrophils Derived from ER-Hoxb8 Progenitors Yang Zhou †, Justine Hann †,Véronique Schenten, Sébastien Plançon, Jean-Luc Bueb, Fabrice Tolle ‡ and Sabrina Bréchard *,‡ Department of Life Sciences and Medicine, University of Luxembourg, 6 Avenue du Swing, L-4367 Belvaux, Luxembourg; [email protected] (Y.Z.); [email protected] (J.H.); [email protected] (V.S.); [email protected] (S.P.); [email protected] (J.-L.B.); [email protected] (F.T.) * Correspondence: [email protected]; Tel.: +352-466644-6434 † Both first authors contributed equally to this work. ‡ Both last authors contributed equally to this work. Abstract: S100A9, a Ca2+-binding protein, is tightly associated to neutrophil pro-inflammatory functions when forming a heterodimer with its S100A8 partner. Upon secretion into the extracellular environment, these proteins behave like damage-associated molecular pattern molecules, which actively participate in the amplification of the inflammation process by recruitment and activation of pro-inflammatory cells. Intracellular functions have also been attributed to the S100A8/A9 complex, notably its ability to regulate nicotinamide adenine dinucleotide phosphate (NADPH) oxidase activation. However, the complete functional spectrum of S100A8/A9 at the intracellular level is far from being understood. In this context, we here investigated the possibility that the absence of Citation: Zhou, Y.; Hann, J.; intracellular S100A8/A9 is involved in cytokine secretion. To overcome the difficulty of genetically Schenten, V.; Plançon, S.; Bueb, J.-L.; modifying neutrophils, we used murine neutrophils derived from wild-type and S100A9−/− Hoxb8 Tolle, F.; Bréchard, S. -
Recruitment of Monocytes to the Pre-Ovulatory Ovary Alex Paige Whitaker Eastern Kentucky University
Eastern Kentucky University Encompass Online Theses and Dissertations Student Scholarship January 2016 Recruitment of monocytes to the pre-ovulatory ovary Alex Paige Whitaker Eastern Kentucky University Follow this and additional works at: https://encompass.eku.edu/etd Part of the Biochemistry, Biophysics, and Structural Biology Commons Recommended Citation Whitaker, Alex Paige, "Recruitment of monocytes to the pre-ovulatory ovary" (2016). Online Theses and Dissertations. 445. https://encompass.eku.edu/etd/445 This Open Access Thesis is brought to you for free and open access by the Student Scholarship at Encompass. It has been accepted for inclusion in Online Theses and Dissertations by an authorized administrator of Encompass. For more information, please contact [email protected]. Recruitment of monocytes to the pre-ovulatory ovary By Alex Whitaker Bachelor of Science Eastern Kentucky University Richmond, Kentucky 2013 Submitted to the Faculty of the Graduate School of Eastern Kentucky University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE May, 2016 Copyright © Alex Whitaker, 2016 All rights reserved ii DEDICATION This thesis is dedicated to my parents Steve and Debby Whitaker for their unwavering encouragement. iii ACKNOWLEDGEMENTS I would like to thank my mentor, Dr. Oliver R. Oakley, for his support, guidance, and help regarding the completion of this project. If not for the many demonstrations of experimental techniques, reassurance when experiments failed, and stimulating ideas and background knowledge, this research may not have been finished. In addition, I would like to thank the other committee members, Dr. Marcia Pierce and Lindsey Calderon for comments and assistance with writing. -
As Myeloid-Derived Suppressor Cells to the Accumulation of Splenocytes That Act Mice Display Aberrant Myelopoiesis Leading
Mast Cell−deficient KitW-sh ''Sash'' Mutant Mice Display Aberrant Myelopoiesis Leading to the Accumulation of Splenocytes That Act as Myeloid-Derived Suppressor Cells This information is current as of September 24, 2021. Anastasija Michel, Andrea Schüler, Pamela Friedrich, Fatma Döner, Tobias Bopp, Markus Radsak, Markus Hoffmann, Manfred Relle, Ute Distler, Jörg Kuharev, Stefan Tenzer, Thorsten B. Feyerabend, Hans-Reimer Rodewald, Hansjörg Schild, Edgar Schmitt, Marc Becker and Michael Stassen Downloaded from J Immunol 2013; 190:5534-5544; Prepublished online 1 May 2013; doi: 10.4049/jimmunol.1203355 http://www.jimmunol.org/content/190/11/5534 http://www.jimmunol.org/ Supplementary http://www.jimmunol.org/content/suppl/2013/05/01/jimmunol.120335 Material 5.DC1 References This article cites 55 articles, 17 of which you can access for free at: http://www.jimmunol.org/content/190/11/5534.full#ref-list-1 by guest on September 24, 2021 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2013 by The American Association of Immunologists, Inc. -
Genome-Wide Association of Genetic Variation in the PSCA Gene with Gastric Cancer Susceptibility in a Korean Population
pISSN 1598-2998, eISSN 2005-9256 Cancer Res Treat. 2019;51(2):748-757 https://doi.org/10.4143/crt.2018.162 Original Article Open Access Genome-Wide Association of Genetic Variation in the PSCA Gene with Gastric Cancer Susceptibility in a Korean Population Boyoung Park, MD, PhD1,2 Purpose Sarah Yang, PhD3,4 Half of the world’s gastric cancer cases and the highest gastric cancer mortality rates are observed in Eastern Asia. Although several genome-wide association studies (GWASs) have Jeonghee Lee, MS3 revealed susceptibility genes associated with gastric cancer, no GWASs have been con- PhD3 Hae Dong Woo, ducted in the Korean population, which has the highest incidence of gastric cancer. Il Ju Choi, MD, PhD5 Young Woo Kim, MD, PhD5 Materials and Methods Keun Won Ryu, MD, PhD5 We performed genome scanning of 450 gastric cancer cases and 1,134 controls via Affymetrix Axiom Exome 319 arrays, followed by replication of 803 gastric cancer cases and Young-Il Kim, MD, PhD5 3,693 healthy controls. Jeongseon Kim, PhD2,3 Results We showed that the rs2976394 in the prostate stem cell antigen (PSCA) gene is a gastric- 1Department of Medicine, Hanyang cancer-susceptibility gene in a Korean population, with genome-wide significance and an University College of Medicine, Seoul, odds ratio (OR) of 0.70 (95% confidence interval [CI], 0.64 to 0.77). A strong linkage dise- 2 Graduate School of Cancer Science and quilibrium with rs2294008 was also found, indicating an association with susceptibility. Policy, National Cancer Center, Goyang, 3Molecular Epidemiology Branch, Division of Individuals with the CC genotype of the PSCA gene showed an approximately 2-fold lower Cancer Epidemiology and Prevention, risk of gastric cancer compared to those with the TT genotype (OR, 0.47; 95% CI, 0.39 to Research Institute, National Cancer Center, 0.57). -
Molecular Evolution of Three-Finger Toxins in the Long-Glanded Coral Snake Species Calliophis Bivirgatus
toxins Article Electric Blue: Molecular Evolution of Three-Finger Toxins in the Long-Glanded Coral Snake Species Calliophis bivirgatus Daniel Dashevsky 1,2 , Darin Rokyta 3 , Nathaniel Frank 4, Amanda Nouwens 5 and Bryan G. Fry 1,* 1 Venom Evolution Lab, School of Biological Sciences, University of Queensland, St Lucia, QLD 4072, Australia; [email protected] 2 Australian National Insect Collection, Commonwealth Science and Industry Research Organization, Canberra, ACT 2601, Australia 3 Department of Biological Sciences, Florida State University, Tallahassee, FL 24105, USA; [email protected] 4 MToxins Venom Lab, 717 Oregon Street, Oshkosh, WI 54902, USA; [email protected] 5 School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD 4072, Australia; [email protected] * Correspondence: [email protected], Tel.: +61-7-336-58515 Abstract: The genus Calliophis is the most basal branch of the family Elapidae and several species in it have developed highly elongated venom glands. Recent research has shown that C. bivirgatus has evolved a seemingly unique toxin (calliotoxin) that produces spastic paralysis in their prey by acting on the voltage-gated sodium (NaV) channels. We assembled a transcriptome from C. bivirgatus to investigate the molecular characteristics of these toxins and the venom as a whole. We find strong confirmation that this genus produces the classic elapid eight-cysteine three-finger toxins, that δ-elapitoxins (toxins that resemble calliotoxin) are responsible for a substantial portion of the venom composition, and that these toxins form a distinct clade within a larger, more diverse clade of C. bivirgatus three-finger toxins. This broader clade of C. -
Analysis of the Indacaterol-Regulated Transcriptome in Human Airway
Supplemental material to this article can be found at: http://jpet.aspetjournals.org/content/suppl/2018/04/13/jpet.118.249292.DC1 1521-0103/366/1/220–236$35.00 https://doi.org/10.1124/jpet.118.249292 THE JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS J Pharmacol Exp Ther 366:220–236, July 2018 Copyright ª 2018 by The American Society for Pharmacology and Experimental Therapeutics Analysis of the Indacaterol-Regulated Transcriptome in Human Airway Epithelial Cells Implicates Gene Expression Changes in the s Adverse and Therapeutic Effects of b2-Adrenoceptor Agonists Dong Yan, Omar Hamed, Taruna Joshi,1 Mahmoud M. Mostafa, Kyla C. Jamieson, Radhika Joshi, Robert Newton, and Mark A. Giembycz Departments of Physiology and Pharmacology (D.Y., O.H., T.J., K.C.J., R.J., M.A.G.) and Cell Biology and Anatomy (M.M.M., R.N.), Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada Received March 22, 2018; accepted April 11, 2018 Downloaded from ABSTRACT The contribution of gene expression changes to the adverse and activity, and positive regulation of neutrophil chemotaxis. The therapeutic effects of b2-adrenoceptor agonists in asthma was general enriched GO term extracellular space was also associ- investigated using human airway epithelial cells as a therapeu- ated with indacaterol-induced genes, and many of those, in- tically relevant target. Operational model-fitting established that cluding CRISPLD2, DMBT1, GAS1, and SOCS3, have putative jpet.aspetjournals.org the long-acting b2-adrenoceptor agonists (LABA) indacaterol, anti-inflammatory, antibacterial, and/or antiviral activity. Numer- salmeterol, formoterol, and picumeterol were full agonists on ous indacaterol-regulated genes were also induced or repressed BEAS-2B cells transfected with a cAMP-response element in BEAS-2B cells and human primary bronchial epithelial cells by reporter but differed in efficacy (indacaterol $ formoterol . -
Rabbit Anti-LYPD6B/CT116/FITC Conjugated Antibody-SL18576R-FITC
SunLong Biotech Co.,LTD Tel: 0086-571- 56623320 Fax:0086-571- 56623318 E-mail:[email protected] www.sunlongbiotech.com Rabbit Anti-LYPD6B/CT116/FITC Conjugated antibody SL18576R-FITC Product Name: Anti-LYPD6B/CT116/FITC Chinese Name: FITC标记的LYPD6B蛋白抗体 Cancer/testis antigen 116; CT116; LY6/PLAUR domain containing 6B; Ly6/PLAUR Alias: domain containing protein 6B; LYPD6B; LYPD7. Organism Species: Rabbit Clonality: Polyclonal React Species: Human,Mouse,Rat,Dog,Cow,Rabbit,Sheep, ICC=1:50-200IF=1:50-200 Applications: not yet tested in other applications. optimal dilutions/concentrations should be determined by the end user. Molecular weight: 14kDa Form: Lyophilized or Liquid Concentration: 1mg/ml immunogen: KLH conjugated synthetic peptide derived from human LYPD6B/CT116 Lsotype: IgG Purification: affinitywww.sunlongbiotech.com purified by Protein A Storage Buffer: 0.01M TBS(pH7.4) with 1% BSA, 0.03% Proclin300 and 50% Glycerol. Store at -20 ℃ for one year. Avoid repeated freeze/thaw cycles. The lyophilized antibody is stable at room temperature for at least one month and for greater than a year Storage: when kept at -20℃. When reconstituted in sterile pH 7.4 0.01M PBS or diluent of antibody the antibody is stable for at least two weeks at 2-4 ℃. background: The second largest human chromosome, 2 consists of 237 million bases encoding over 1,400 genes and making up approximately 8% of the human genome. A number of Product Detail: genetic diseases are linked to genes on chromosome 2. Harlequin icthyosis, a rare and morbid skin deformity, is associated with mutations in the ABCA12 gene. The lipid metabolic disorder sitosterolemia is associated with ABCG5 and ABCG8. -
Suppressor of Cytokine Signaling-1 Peptidomimetic Limits Progression of Diabetic Nephropathy
BASIC RESEARCH www.jasn.org Suppressor of Cytokine Signaling-1 Peptidomimetic Limits Progression of Diabetic Nephropathy †‡ † †‡ † † Carlota Recio,* Iolanda Lazaro,* Ainhoa Oguiza,* Laura Lopez-Sanz,* Susana Bernal,* †‡ †‡ Julia Blanco,§ Jesus Egido, and Carmen Gomez-Guerrero* *Renal and Vascular Inflammation Group and †Division of Nephrology and Hypertension, Fundacion Jimenez Diaz University Hospital-Health Research Institute, Autonoma University of Madrid; ‡Spanish Biomedical Research Centre in Diabetes and Associated Metabolic Disorders; and §Department of Pathology, Hospital Clinico San Carlos, Madrid, Spain ABSTRACT Diabetes is the main cause of CKD and ESRD worldwide. Chronic activation of Janus kinase and signal transducer and activator of transcription (STAT) signaling contributes to diabetic nephropathy by inducing genes involved in leukocyte infiltration, cell proliferation, and extracellular matrix accumulation. This study examined whether a cell-permeable peptide mimicking the kinase-inhibitory region of suppressor of cy- tokine signaling-1 (SOCS1) regulatory protein protects against nephropathy by suppressing STAT-mediated cell responses to diabetic conditions. In a mouse model combining hyperglycemia and hypercholesterolemia (streptozotocin diabetic, apoE-deficient mice), renal STAT activation status correlated with the severity of nephropathy. Notably, compared with administration of vehicle or mutant inactive peptide, administration of the SOCS1 peptidomimetic at either early or advanced stages of diabetes ameliorated STAT activity and resulted in reduced serum creatinine level, albuminuria, and renal histologic changes (mesangial expansion, tubular injury, and fibrosis) over time. Mice treated with the SOCS1 peptidomimetic also exhibited reduced kidney leukocyte recruitment (T lymphocytes and classic M1 proinflammatory macrophages) and decreased expression levels of proinflammatory and profibrotic markers that were independent of glycemic and lipid changes. -
New Blocking Antibodies Against Novel AGR2-C4.4A Pathway Reduce Growth and Metastasis of Pancreatic Tumors and Increase Survival in Mice
Author Manuscript Published OnlineFirst on February 2, 2015; DOI: 10.1158/1535-7163.MCT-14-0470 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. New Blocking Antibodies against Novel AGR2-C4.4A Pathway Reduce Growth and Metastasis of Pancreatic Tumors and Increase Survival in Mice Thiruvengadam Arumugam,1 Defeng Deng,1 Laura Bover2, Huamin Wang,3 Craig D. Logsdon1,4, and Vijaya Ramachandran,1* Depts. of Cancer Biology1, Genomic Medicine2, Pathology3 and GI Medical Oncology4, The University of Texas MD Anderson Cancer Center, Houston, TX, 77054, USA. Running title: C4.4A is the functional receptor of AGR2 Key words: Anterior Gradient 2, C4.4A, bioluminescence, pancreatic adenocarcinoma, AGR2/C4.4A blocking antibodies Disclosures: None Financial Support and Acknowledgements: This research was supported by funds from the Lockton Endowment (to C.D. Logsdon), by Cancer Center Support Core grant CA16672, Pancreatic Specialized Programs of Research Excellence (SPORE) grant P20 CA101936 (to The University of Texas MD Anderson Cancer Center), University Cancer Foundation (to V.Ramachandran) and GS Hogan Gastrointestinal Research funds (to C.D. Logsdon and V. Ramachandran). This research was also supported by funds from the Sheikh Ahmed Center for Pancreatic Cancer Research at The University of Texas M. D. Anderson Cancer Center (to V. Ramachandran). We also acknowledge the MDACC Monoclonal Antibody Core Facility for their help in developing the monoclonal antibodies and the core is funded by NCI#CA 16672. *Corresponding Author: Vijaya Ramachandran, Ph.D Assistant Professor, Department of Cancer Biology, The University of Texas MD Anderson Cancer Center, Unit 953, 1515 Holcombe Blvd, Houston, Texas 77030, USA Phone: 713-792-9134; Fax: 713- 563-8986 Email: [email protected] 1 Downloaded from mct.aacrjournals.org on September 28, 2021. -
Prostate Stem Cell Antigen Is Expressed in Normal and Malignant Human Brain Tissues
ONCOLOGY LETTERS 15: 3081-3084, 2018 Prostate stem cell antigen is expressed in normal and malignant human brain tissues HIROE ONO, HIROMI SAKAMOTO, TERUHIKO YOSHIDA and NORIHISA SAEKI Division of Genetics, National Cancer Center Research Institute, Tokyo 104-0045, Japan Received June 25, 2015; Accepted October 24, 2016 DOI: 10.3892/ol.2017.7632 Abstract. Prostate stem cell antigen (PSCA) is a glyco- functions in subcellular signal transduction (2). Originally, sylphosphatidylinositol (GPI)-anchored cell surface protein PSCA was identified as a gene upregulated in prostate cancer (3), and exhibits an organ-dependent expression pattern in cancer. and later its upregulation was demonstrated in other types of PSCA is upregulated in prostate cancer and downregulated in tumor, including urinary bladder cancer, renal cell carcinoma, gastric cancer. PSCA is expressed in a variety of human organs. hydatidiform mole and ovarian mucinous tumor, where PSCA is Although certain studies previously demonstrated its expres- thought to be involved in tumor progression (1). However, down- sion in the mammalian and avian brain, its expression in the regulation of the gene was reported in gastric and gallbladder human brain has not been thoroughly elucidated. Additionally, cancer, where it may act as a tumor suppressor (4,5). As another it was previously reported that PSCA is weakly expressed in the pattern of its expression in cancer, PSCA is not expressed in the astrocytes of the normal human brain but aberrantly expressed ductal cells of the normal pancreas or the epithelial cells in the in glioma, suggesting that PSCA is a promising target of normal lung, however, it is expressed in their malignant coun- glioma therapy and prostate cancer therapy. -
Organization, Evolution and Functions of the Human and Mouse Ly6/Upar Family Genes Chelsea L
Loughner et al. Human Genomics (2016) 10:10 DOI 10.1186/s40246-016-0074-2 GENE FAMILY UPDATE Open Access Organization, evolution and functions of the human and mouse Ly6/uPAR family genes Chelsea L. Loughner1, Elspeth A. Bruford2, Monica S. McAndrews3, Emili E. Delp1, Sudha Swamynathan1 and Shivalingappa K. Swamynathan1,4,5,6,7* Abstract Members of the lymphocyte antigen-6 (Ly6)/urokinase-type plasminogen activator receptor (uPAR) superfamily of proteins are cysteine-rich proteins characterized by a distinct disulfide bridge pattern that creates the three-finger Ly6/uPAR (LU) domain. Although the Ly6/uPAR family proteins share a common structure, their expression patterns and functions vary. To date, 35 human and 61 mouse Ly6/uPAR family members have been identified. Based on their subcellular localization, these proteins are further classified as GPI-anchored on the cell membrane, or secreted. The genes encoding Ly6/uPAR family proteins are conserved across different species and are clustered in syntenic regions on human chromosomes 8, 19, 6 and 11, and mouse Chromosomes 15, 7, 17, and 9, respectively. Here, we review the human and mouse Ly6/uPAR family gene and protein structure and genomic organization, expression, functions, and evolution, and introduce new names for novel family members. Keywords: Ly6/uPAR family, LU domain, Three-finger domain, uPAR, Lymphocytes, Neutrophils Introduction an overview of the Ly6/uPAR gene family and their gen- The lymphocyte antigen-6 (Ly6)/urokinase-type plas- omic organization, evolution, as well as functions, and minogen activator receptor (uPAR) superfamily of struc- provide a nomenclature system for the newly identified turally related proteins is characterized by the LU members of this family.