Nephronophthisis: Disease Mechanisms of a Ciliopathy
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Educational Paper Ciliopathies
Eur J Pediatr (2012) 171:1285–1300 DOI 10.1007/s00431-011-1553-z REVIEW Educational paper Ciliopathies Carsten Bergmann Received: 11 June 2011 /Accepted: 3 August 2011 /Published online: 7 September 2011 # The Author(s) 2011. This article is published with open access at Springerlink.com Abstract Cilia are antenna-like organelles found on the (NPHP) . Ivemark syndrome . Meckel syndrome (MKS) . surface of most cells. They transduce molecular signals Joubert syndrome (JBTS) . Bardet–Biedl syndrome (BBS) . and facilitate interactions between cells and their Alstrom syndrome . Short-rib polydactyly syndromes . environment. Ciliary dysfunction has been shown to Jeune syndrome (ATD) . Ellis-van Crefeld syndrome (EVC) . underlie a broad range of overlapping, clinically and Sensenbrenner syndrome . Primary ciliary dyskinesia genetically heterogeneous phenotypes, collectively (Kartagener syndrome) . von Hippel-Lindau (VHL) . termed ciliopathies. Literally, all organs can be affected. Tuberous sclerosis (TSC) . Oligogenic inheritance . Modifier. Frequent cilia-related manifestations are (poly)cystic Mutational load kidney disease, retinal degeneration, situs inversus, cardiac defects, polydactyly, other skeletal abnormalities, and defects of the central and peripheral nervous Introduction system, occurring either isolated or as part of syn- dromes. Characterization of ciliopathies and the decisive Defective cellular organelles such as mitochondria, perox- role of primary cilia in signal transduction and cell isomes, and lysosomes are well-known -
Ciliopathiesneuromuscularciliopathies Disorders Disorders Ciliopathiesciliopathies
NeuromuscularCiliopathiesNeuromuscularCiliopathies Disorders Disorders CiliopathiesCiliopathies AboutAbout EGL EGL Genet Geneticsics EGLEGL Genetics Genetics specializes specializes in ingenetic genetic diagnostic diagnostic testing, testing, with with ne nearlyarly 50 50 years years of of clinical clinical experience experience and and board-certified board-certified labor laboratoryatory directorsdirectors and and genetic genetic counselors counselors reporting reporting out out cases. cases. EGL EGL Genet Geneticsics offers offers a combineda combined 1000 1000 molecular molecular genetics, genetics, biochemical biochemical genetics,genetics, and and cytogenetics cytogenetics tests tests under under one one roof roof and and custom custom test testinging for for all all medically medically relevant relevant genes, genes, for for domestic domestic andand international international clients. clients. EquallyEqually important important to to improving improving patient patient care care through through quality quality genetic genetic testing testing is is the the contribution contribution EGL EGL Genetics Genetics makes makes back back to to thethe scientific scientific and and medical medical communities. communities. EGL EGL Genetics Genetics is is one one of of only only a afew few clinical clinical diagnostic diagnostic laboratories laboratories to to openly openly share share data data withwith the the NCBI NCBI freely freely available available public public database database ClinVar ClinVar (>35,000 (>35,000 variants variants on on >1700 >1700 genes) genes) and and is isalso also the the only only laboratory laboratory with with a a frefree oen olinnlein dea dtabtaabsaes (eE m(EVmCVlaCslas)s,s f)e, afetuatruinrgin ag vaa vraiarniatn ctl acslasisfiscifiactiaotino sne saercahrc ahn adn rde rpeoprot rrte rqeuqeuset sint tinetrefarcfaec, ew, hwichhic fha cfailcitialiteatse rsa praidp id interactiveinteractive curation curation and and reporting reporting of of variants. -
Unraveling the Genetics of Joubert and Meckel-Gruber Syndromes
Journal of Pediatric Genetics 3 (2014) 65–78 65 DOI 10.3233/PGE-14090 IOS Press Unraveling the genetics of Joubert and Meckel-Gruber syndromes Katarzyna Szymanska, Verity L. Hartill and Colin A. Johnson∗ Department of Ophthalmology and Neuroscience, University of Leeds, Leeds, UK Received 27 May 2014 Revised 11 July 2014 Accepted 14 July 2014 Abstract. Joubert syndrome (JBTS) and Meckel-Gruber syndrome (MKS) are recessive neurodevelopmental conditions caused by mutations in proteins that are structural or functional components of the primary cilium. In this review, we provide an overview of their clinical diagnosis, management and molecular genetics. Both have variable phenotypes, extreme genetic heterogeneity, and display allelism both with each other and other ciliopathies. Recent advances in genetic technology have significantly improved diagnosis and clinical management of ciliopathy patients, with the delineation of some general genotype-phenotype correlations. We highlight those that are most relevant for clinical practice, including the correlation between TMEM67 mutations and the JBTS variant phenotype of COACH syndrome. The subcellular localization of the known MKS and JBTS proteins is now well-described, and we discuss some of the contemporary ideas about ciliopathy disease pathogenesis. Most JBTS and MKS proteins localize to a discrete ciliary compartment called the transition zone, and act as structural components of the so-called “ciliary gate” to regulate the ciliary trafficking of cargo proteins or lipids. Cargo proteins include enzymes and transmembrane proteins that mediate intracellular signaling. The disruption of transition zone function may contribute to the ciliopathy phenotype by altering the composition of the ciliary membrane or axoneme, with impacts on essential developmental signaling including the Wnt and Shh pathways as well as the regulation of secondary messengers such as inositol-1,4,5-trisphosphate (InsP3) and cyclic adenosine monophosphate (cAMP). -
Intraflagellar Transport Proteins Are Essential for Cilia Formation and for Planar Cell Polarity
BASIC RESEARCH www.jasn.org Intraflagellar Transport Proteins Are Essential for Cilia Formation and for Planar Cell Polarity Ying Cao, Alice Park, and Zhaoxia Sun Department of Genetics, Yale University School of Medicine, New Haven, Connecticut ABSTRACT The highly conserved intraflagellar transport (IFT) proteins are essential for cilia formation in multiple organisms, but surprisingly, cilia form in multiple zebrafish ift mutants. Here, we detected maternal deposition of ift gene products in zebrafish and found that ciliary assembly occurs only during early developmental stages, supporting the idea that maternal contribution of ift gene products masks the function of IFT proteins during initial development. In addition, the basal bodies in multiciliated cells of the pronephric duct in ift mutants were disorganized, with a pattern suggestive of defective planar cell polarity (PCP). Depletion of pk1, a core PCP component, similarly led to kidney cyst formation and basal body disorganization. Furthermore, we found that multiple ift genes genetically interact with pk1. Taken together, these data suggest that IFT proteins play a conserved role in cilia formation and planar cell polarity in zebrafish. J Am Soc Nephrol 21: 1326–1333, 2010. doi: 10.1681/ASN.2009091001 The cilium is a cell surface organelle that is almost In zebrafish, mutants of ift57, ift81, ift88, and ubiquitously present on vertebrate cells. Pro- ift172 have numerous defects commonly associated truding from the cell into its environment, the with ciliary abnormalities.13,14 -
Evolving Concepts in Human Renal Dysplasia
DISEASE OF THE MONTH J Am Soc Nephrol 15: 998–1007, 2004 EBERHARD RITZ, FEATURE EDITOR Evolving Concepts in Human Renal Dysplasia ADRIAN S. WOOLF, KAREN L. PRICE, PETER J. SCAMBLER, and PAUL J.D. WINYARD Nephro-Urology and Molecular Medicine Units, Institute of Child Health, University College London, London, United Kingdom Abstract. Human renal dysplasia is a collection of disorders in correlating with perturbed cell turnover and maturation. Mu- which kidneys begin to form but then fail to differentiate into tations of nephrogenesis genes have been defined in multiorgan normal nephrons and collecting ducts. Dysplasia is the princi- dysmorphic disorders in which renal dysplasia can feature, pal cause of childhood end-stage renal failure. Two main including Fraser, renal cysts and diabetes, and Kallmann syn- theories have been considered in its pathogenesis: A primary dromes. Here, it is possible to begin to understand the normal failure of ureteric bud activity and a disruption produced by nephrogenic function of the wild-type proteins and understand fetal urinary flow impairment. Recent studies have docu- how mutations might cause aberrant organogenesis. mented deregulation of gene expression in human dysplasia, Congenital anomalies of the kidney and urinary tract and the main renal pathology is renal dysplasia (RD). In her (CAKUT) account for one third of all anomalies detected by landmark book Normal and Abnormal Development of the routine fetal ultrasonography (1). A recent UK audit of child- Kidney published in 1972 (7), Edith Potter emphasized that one hood end-stage renal failure reported that CAKUT was the must understand normal development to generate realistic hy- cause in ~40% of 882 individuals (2). -
A Ciliopathy-Associated COPD Endotype
Perotin et al. Respir Res (2021) 22:74 https://doi.org/10.1186/s12931-021-01665-4 LETTER TO THE EDITOR Open Access CiliOPD: a ciliopathy-associated COPD endotype Jeanne‑Marie Perotin1,2, Myriam Polette1,3, Gaëtan Deslée1,2 and Valérian Dormoy1* Abstract The pathophysiology of chronic obstructive pulmonary disease (COPD) relies on airway remodelling and infam‑ mation. Alterations of mucociliary clearance are a major hallmark of COPD caused by structural and functional cilia abnormalities. Using transcriptomic databases of whole lung tissues and isolated small airway epithelial cells (SAEC), we comparatively analysed cilia‑associated and ciliopathy‑associated gene signatures from a set of 495 genes in 7 datasets including 538 non‑COPD and 508 COPD patients. This bio‑informatics approach unveils yet undescribed cilia and ciliopathy genes associated with COPD including NEK6 and PROM2 that may contribute to the pathology, and suggests a COPD endotype exhibiting ciliopathy features (CiliOPD). Keywords: COPD, Cilia, Transcriptomic Introduction signatures in 7 datasets including 538 non-COPD and Cilia dysfunction is a hallmark of chronic obstructive 508 COPD patients. infammatory lung diseases [1]. Alterations of both cilia structure and function alter airway mucociliary clear- Methods ance. Epithelial remodelling is indicted in COPD patho- Gene selection genesis, including distal to proximal repatterning of the Human cilia-associated genes (n = 447) and ciliopathy- small airways and altered generation of motile and pri- associated genes (n = -
Ciliary Dysfunction Secondary to COVID-19. Explanation of the Pathogenesis from Analysis of Human Interactome with SARS
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 25 December 2020 doi:10.20944/preprints202012.0663.v1 Ciliary dysfunction secondary to COVID-19. Explanation of the pathogenesis from analysis of human interactome with SARS- CoV-2 proteome MD Alejandro Jesús Bermejo-Valdés1, MD Alexander Ariel Padrón-González2, MD Jessica Archer Jiménez3 1Riojan Health Service, Emergency Service 061, Piqueras 98, 26006, Logroño, La Rioja, Spain 2Central Laboratory of Cerebrospinal Fluid (LABCEL), Ramón Pinto No. 202, Luyanó, Diez de Octubre, Havana Medical Sciences University, AP 10049, CP 11000, Havana, Cuba 3Riojan Health Service, Emergency Service 061, Piqueras 98, 26006, Logroño, La Rioja, Spain Abstract Coronavirus Disease-2019 (COVID-19) is an infectious disease caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). There is sufficient experimental evidence to confirm that SARS-CoV-2 infection produces states of ciliary and flagellar dysfunction. However, these studies are unable to explain the observed effects molecularly, because they lack a sufficient understanding of the interaction between human proteins and virus proteins. Using the physical-chemical study of the human interactome in interaction with the SARS-CoV-2 proteome, we found evidence of interactions to explain the experimental effects from a molecular perspective. We found that ten viral proteins interact with key components in the maintenance of the molecular structure of axoneme. Additionally, we evaluated the pulmonary and extrapulmonary pathogenesis of COVID-19 from the point of view of ciliary dysfunction, and warned about other possible complications such as episodes of transient infertility that, due to the limitations of our work, would need verification. -
Histone Deacetylase 6 Represents a Novel Drug Target in the Oncogenic Hedgehog Signaling Pathway
Aus dem Institut für Molekularbiologie und Tumorforschung Geschäftsführender Direktor: Prof. Dr. Rolf Müller des Fachbereichs Medizin der Philipps-Universität Marburg Histone deacetylase 6 represents a novel drug target in the oncogenic Hedgehog signaling pathway Inaugural- Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften dem Fachbereich Medizin der Philipps-Universität Marburg vorgelegt von Dhanyamraju Pavan Kumar aus Secunderabad, Indien Marburg-2017 Angenommen vom Fachbereich Medizin der Philipps Universität Marburg am:3/11/2017 Gedruckt mit der Genehmigung des Fachbereichs Dekan: Prof. Dr. Helmut Schäfer Referent: PD. Dr. Matthias Lauth Korreferent: Prof. Dr. Elke Pogge von Strandmann Table of Contents 1. Summary……………………………………………………………………………...1 1. Zussamenfassung …………………………………………………………....……….2 2. Introduction………………………………………………………………………......3 2.1 The Hedgehog signalling pathway…………………………………………………3 2.2 The Mechanism of Hedgehog signal transduction…………………………………5 2.3 Ptch1 a tumor suppressor gene…………………………………………………....10 2.4 Primary cilium and Hedgehog signalling.………………….………………….….11 2.5 Histone deacetylases (HDACs)………………………………………………...…15 2.6 Classification of Histone deacetylases……………………………………………16 2.7 Histone deacetylase 6……………………………………………………….….…17 2.8 Regulation of Ciliogenesis by HDAC6…………………………………………...20 2.9 Hedgehog signalling and Cancer………………………………………………….22 2.10 Hedgehog signalling Type-I- Mutation driven-ligand independent………….….22 2.11 Hedgehog signalling Type-II-Autocrine-ligand dependent………………….….23 -
Abstracts from the 51St European Society of Human Genetics Conference: Electronic Posters
European Journal of Human Genetics (2019) 27:870–1041 https://doi.org/10.1038/s41431-019-0408-3 MEETING ABSTRACTS Abstracts from the 51st European Society of Human Genetics Conference: Electronic Posters © European Society of Human Genetics 2019 June 16–19, 2018, Fiera Milano Congressi, Milan Italy Sponsorship: Publication of this supplement was sponsored by the European Society of Human Genetics. All content was reviewed and approved by the ESHG Scientific Programme Committee, which held full responsibility for the abstract selections. Disclosure Information: In order to help readers form their own judgments of potential bias in published abstracts, authors are asked to declare any competing financial interests. Contributions of up to EUR 10 000.- (Ten thousand Euros, or equivalent value in kind) per year per company are considered "Modest". Contributions above EUR 10 000.- per year are considered "Significant". 1234567890();,: 1234567890();,: E-P01 Reproductive Genetics/Prenatal Genetics then compared this data to de novo cases where research based PO studies were completed (N=57) in NY. E-P01.01 Results: MFSIQ (66.4) for familial deletions was Parent of origin in familial 22q11.2 deletions impacts full statistically lower (p = .01) than for de novo deletions scale intelligence quotient scores (N=399, MFSIQ=76.2). MFSIQ for children with mater- nally inherited deletions (63.7) was statistically lower D. E. McGinn1,2, M. Unolt3,4, T. B. Crowley1, B. S. Emanuel1,5, (p = .03) than for paternally inherited deletions (72.0). As E. H. Zackai1,5, E. Moss1, B. Morrow6, B. Nowakowska7,J. compared with the NY cohort where the MFSIQ for Vermeesch8, A. -
Irish Rare Kidney Disease Network (IRKDN)
Irish Rare kidney Disease Network (IRKDN) Others Cork University Mater, Waterford University Dr Liam Plant Hospital Galway Dr Abernathy University Hospital Renal imaging Dr M Morrin Prof Griffin Temple St and Crumlin Beaumont Hospital CHILDRENS Hospital Tallaght St Vincents Dr Atiff Awann Rare Kidney Disease Clinic Hospital University Hospital Prof Peter Conlon Dr Lavin Prof Dr Holian Little Renal pathology Lab Limerick University Dr Dorman and Hospital Dr Doyle Dr Casserly Patient Renal Council Genetics St James Laboratory Hospital RCSI Dr Griffin Prof Cavaller MISION Provision of care to patients with Rare Kidney Disease based on best available medical evidence through collaboration within Ireland and Europe Making available clinical trials for rare kidney disease to Irish patients where available Collaboration with other centres in Europe treating rare kidney disease Education of Irish nephrologists on rare Kidney Disease. Ensuring a seamless transition of children from children’s hospital with rare kidney disease to adult centres with sharing of knowledge of rare paediatric kidney disease with adult centres The provision of precise molecular diagnosis of patients with rare kidney disease The provision of therapeutic plan based on understanding of molecular diagnosis where available Development of rare disease specific registries within national renal It platform ( Emed) Structure Beaumont Hospital will act as National rare Kidney Disease Coordinating centre working in conjunction with a network of Renal unit across the country -
Meckel–Gruber Syndrome: an Update on Diagnosis, Clinical Management, and Research Advances
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by White Rose Research Online MINI REVIEW published: 20 November 2017 doi: 10.3389/fped.2017.00244 Meckel–Gruber Syndrome: An Update on Diagnosis, Clinical Management, and Research Advances Verity Hartill1,2, Katarzyna Szymanska2, Saghira Malik Sharif1, Gabrielle Wheway3 and Colin A. Johnson2* 1 Department of Clinical Genetics, Yorkshire Regional Genetics Service, Leeds Teaching Hospitals NHS Trust, Leeds, United Kingdom, 2 Leeds Institute of Biomedical and Clinical Sciences, University of Leeds, Leeds, United Kingdom, 3 Faculty of Health and Applied Sciences, Department of Applied Sciences, UWE Bristol, Bristol, United Kingdom Meckel–Gruber syndrome (MKS) is a lethal autosomal recessive congenital anomaly syndrome caused by mutations in genes encoding proteins that are structural or func- tional components of the primary cilium. Conditions that are caused by mutations in ciliary genes are collectively termed the ciliopathies, and MKS represents the most severe condition in this group of disorders. The primary cilium is a microtubule-based organelle, projecting from the apical surface of vertebrate cells. It acts as an “antenna” Edited by: that receives and transduces chemosensory and mechanosensory signals, but also Miriam Schmidts, regulates diverse signaling pathways, such as Wnt and Shh, that have important roles Radboud University Nijmegen, Netherlands during embryonic development. Most MKS proteins localize to a distinct ciliary com- Reviewed by: partment called the transition zone (TZ) that regulates the trafficking of cargo proteins Julia Hoefele, or lipids. In this review, we provide an up-to-date summary of MKS clinical features, Technische Universität München, Germany molecular genetics, and clinical diagnosis. -
The Ciliopathy-Associated CPLANE Proteins Direct Basal Body Recruitment of Intraflagellar Transport Machinery
The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Toriyama, M., C. Lee, S. P. Taylor, I. Duran, D. H. Cohn, A. Bruel, J. M. Tabler, et al. 2016. “The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery.” Nature genetics 48 (6): 648-656. doi:10.1038/ng.3558. http:// dx.doi.org/10.1038/ng.3558. Published Version doi:10.1038/ng.3558 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:29626113 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Nat Genet Manuscript Author . Author manuscript; Manuscript Author available in PMC 2016 November 09. Published in final edited form as: Nat Genet. 2016 June ; 48(6): 648–656. doi:10.1038/ng.3558. The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery Michinori Toriyama1, Chanjae Lee1, S. Paige Taylor2, Ivan Duran2, Daniel H. Cohn3, Ange- Line Bruel4, Jacqueline M. Tabler1, Kevin Drew1, Marcus R. Kelley5, Sukyoung Kim1, Tae Joo Park1,**, Daniella Braun6, Ghislaine Pierquin7, Armand Biver8, Kerstin Wagner9, Anne Malfroot10, Inusha Panigrahi11, Brunella Franco12,13, Hadeel Adel Al-lami14, Yvonne Yeung14, Yeon Ja Choi15, University of Washington Center for Mendelian Genomics16, Yannis Duffourd4, Laurence Faivre4,17, Jean-Baptiste Rivière4,18, Jiang Chen15, Karen J.