Insights Into the Economy of Open Scholarship: a Collection of Interviews © Knowledge Exchange 2019 Acknowledgements

Total Page:16

File Type:pdf, Size:1020Kb

Insights Into the Economy of Open Scholarship: a Collection of Interviews © Knowledge Exchange 2019 Acknowledgements Insights into the Economy of Open Scholarship: A Collection of Interviews © Knowledge Exchange 2019 Acknowledgements Title: Insights into the Economy of Open This report is the effort of many. Thanks to the Scholarship: A Collection of Interviews Knowledege Exchange Task and Finish group with experts from all six Knowledge Exchange Authored by: Gwen Franck countries Anne Sofie Fink Kjeldgaard, Herbert Gruttemeier, Jessica Parland von Essen, Contact: [email protected] Lambert Heller, Laurents Sesink, Leo Mack, Melanie Imming, Minna Ahokas, and Zaza Interviews dated between: May 2018 and Nadja Herbert-Hansen, to Juliane Kant and February 2019 Jean-François Nominé who coordinated the Task and Finish group and to the KE Office DOI: 10.5281/zenodo.2840171 Bas Cordewener and Sarah James. All have fruitfully contributed to this report, although This report is available under a CC BY 4.0 any mistakes and misreportings are the licence creativecommons.org/licenses/by/4.0 responsibility of the author. Contents Preface 5 Interview with Jouni Tuomisto 38 References and relevant links 43 Introduction 6 About Jouni Tuomisto 44 Shared challenges 7 A look into ASAPbio 46 1. HR: researchers ‘in business’ 7 About ASAPbio 47 2. Commercial versus non-profit: walking the line 8 ASAPbio: Business model 48 3. Infrastructure: make or buy? 8 An interview with Jessica Polka 49 4. Licensing: pragmatism 9 Creative Commons and PLOS 51 5. Sustainability and scalability 9 References and relevant links 53 6. Marketing: build it and they will come? 10 About Jessica Polka 54 7. Influence on workflows and the research landscape 10 A look into ScienceOpen 56 A look into the Open Library of Humanities 11 About ScienceOpen 57 About Open Library of Humanities 12 ScienceOpen: Business model 58 OLH: Business model 13 Interview with Stephanie Dawson 59 Interview with Martin Paul Eve 14 References and relevant links 65 References and relevant links 20 About Stephanie Dawson 66 About Martin Paul Eve 21 A look into HR AK 68 Č A look into OpenEdition 23 About HRČAK 69 About OpenEdition 24 HRČAK: Business model 70 OpenEdition: Business model 25 An interview with Jadranka Stojanovski 71 Interview with Pierre Mounier 26 References and relevant links 76 References and relevant links 32 About Jadranka Stojanovski 77 About Pierre Mounier 33 A look into Helsinki University Press 79 A look into Opasnet 35 About Helsinki University Press (HUP) 80 About Opasnet 36 HUP: Business model 81 Opasnet: Business model 37 Interview with Leena Kaakinen 82 Contents continued References and relevant links 86 Appendix 1: methodology 126 About Leena Kaakinen 87 Participants 126 Interview questions 126 A look into Impactstory 89 Procedure 127 About Impactstory 90 Impactstory: Business model 91 Appendix 2: glossary 128 Interview with Heather Piwowar 92 References and relevant links 96 About Heather Piwowar 97 A look into Figshare 99 About Figshare 100 Figshare: Business model 101 Interview with Mark Hahnel 102 References and relevant links 107 About Mark Hahnel 108 A look into Zenodo 110 About Zenodo 111 Zenodo: Business model 112 Interview with Tim Smith 113 References and relevant links 119 About Tim Smith 120 Current state and approaches for further exploration 122 1. Approaches to reach a critical mass 122 2. Approaches to change the licensing culture 123 3. Approaches to avoid data and vendor lock-in 124 4. Approaches for incentivising innovation 124 Insights into the Economy of Open Scholarship A collection of interviews 5 Preface Knowledge Exchange (KE) is a collaboration between ` Level of granularity (scale) payment structures that facilitate Open Scholarship six key national organisations within Europe tasked › macro, covering the population and support it to achieve its full potential. Interviews with developing infrastructure and services to › meso, covering communities/organisations have been conducted with ten selected initiatives enable the use of digital technologies to improve › micro, covering individuals (for more information on the methodology and the higher education and research: CSC (csc.fi) in interview questions see appendix 1). The result is Finland, CNRS (cnrs.fr/en) in France, DAFSHE (bit. ` Research phase this collection of interviews that demonstrate ly/2L488i0) in Denmark, DFG (dfg.de/en) in › discovery successes and challenges to inform and inspire the Germany, Jisc (jisc.ac.uk) in the UK and SURF › planning transition to Open Scholarship. (surf.nl/en) in the Netherlands. The six partners › project share a clear vision that scholarship should be › dissemination The report is divided into an introduction explaining open. The partners work together to support the the background of this activity, followed by shared development of digital infrastructures to enable ` Arena challenges that the interviewees were facing and Open Scholarship. › political the ten interviews. It concludes with the current › economic state and approaches for further exploration. In 2017 KE developed the KE Open Scholarship › social Moreover, there are some details about the framework (see page 7 in the report ‘Moving from › technical methodology in appendix 1 and a glossary in ambition to reality: An account of the Knowledge appendix 2. Exchange workshop on Open Scholarship, Paris The activity underlying this report targeted the 2017, & a menu for possible actions for 2018’ economic arena of the KE Open Scholarship (bit.ly/2BR00h2)) to characterise or categorise framework. It aimed to collect, describe and learn activities, discussion topics, proposals, initiatives from examples and initiatives that pioneered change and more. The framework consists of three dimensions: towards new or alternative business models and Insights into the Economy of Open Scholarship A collection of interviews 6 Introduction In the online age, openness and sharing have become, how to establish and maintain relationships with end Model Canvas as created by Strategyzer if not the standard, at least household practices in users, and how to generate sufficient revenue (strategyzer.com/canvas/business-model- research dissemination. The internet has made it streams for the organisation to remain ‘in business’ canvas). Its model is a very useful way to describe possible to communicate, duplicate, disseminate – these are the challenges that all of the interviewed any organisation type because of its flexibility to and reuse scientific digital research outputs using organisations and businesses are dealing with. focus on elements other than profit generation. In relatively simple means and at little to no extra cost. this collection of interviews, it has certainly helped But the most dominant business models in research Commercial activity in the field of Open Scholarship to analyse the initiatives involved. dissemination are still only a literal transposition of is a sensitive topic and so it is not surprising that traditional, printing press-based models and some of the interviewees objected to describe their These include: workflows into an online environment. While the value organisation as a business or even to framing their proposition in these traditional models is based on activities in a ‘business model’. The concept of a 1. Open Library of Humanities (OLH) (UK): selling or regulating access to resources, this business model has been used to describe the Martin Paul Eve collection of interviews collects a number of examples initiative’s value proposition, the customer relations, 2. OpenEdition (FR): Pierre Mounier of organisations and businesses that work along marketing activities and revenue streams – regardless 3. Opasnet (FI): Jouni Tuomisto different patterns, with business models based on of whether the initiatives have a not-for-profit or a 4. ASAPBio (US): Jessica Polka different value propositions. Every initiative, whether commercial nature. Within the scope of this report, 5. ScienceOpen (GER): Stephanie Dawson non-profit or commercial, has been selected because ‘business’ also encompasses the rationale behind 6. HR AK (HR): Jadranka Stojanovski Č they identified a gap in the Open Scholarship certain decisions about activity range and 7. Helsinki University Press (HUP) (FI): Leena landscape and managed to create value by offering partnerships but also about intellectual property, Kaakinen a service or product that can help to bridge this gap collaboration with partners and marketing decisions. 8. Impactstory (US): Heather Piwowar (for more information on the methodology see As one interviewee puts it: “In the end, whether you 9. Figshare (UK): Mark Hahnel appendix 1). They all pioneered a shift towards new call it a business model or something else, it is still 10. Zenodo (CH): Tim Smith or alternative business models and structures that an essential part of running your organisation, even facilitate and support Open Scholarship at its full if you are a charity”. Every interview includes an potential. How to deliver value to the ‘customers’, infographic that is partially based on the Business Insights into the Economy of Open Scholarship A collection of interviews 7 Shared challenges Although not everything mentioned below is applicable start-ups face when the founder(s) must switch to all organisations, a number of shared challenges from being the universal fixer(s) to letting other (new) and issues faced by most interviewees can be staff members handle certain aspects of the identified. These are related to: organisation. These one or two person organisations are very much associated with the
Recommended publications
  • Preprints in the Spotlight: Establishing Best Practices, Building Trust 1
    ISSUE BRIEF Preprints in the Spotlight Establishing Best Practices, Building Trust May 27, 2020 Oya Y. Rieger Ithaka S+R provides research and Copyright 2020 ITHAKA. This work is strategic guidance to help the licensed under a Creative Commons Attribution-NonCommercial 4.0 academic and cultural communities International License. To view a copy of serve the public good and navigate the license, please see http://creative- economic, demographic, and commons.org/licenses/by-nc/4.0/. technological change. Ithaka S+R is ITHAKA is interested in disseminating part of ITHAKA, a not-for-profit this brief as widely as possible. Please organization that works to advance contact us with any questions about using and preserve knowledge and to the report: [email protected]. improve teaching and learning through the use of digital technologies. Artstor, JSTOR, and Portico are also part of ITHAKA. PREPRINTS IN THE SPOTLIGHT: ESTABLISHING BEST PRACTICES, BUILDING TRUST 1 Introduction Preprints have been getting a lot of attention recently. The COVID-19 pandemic—the first major health crisis since medical and biomedical preprints have become widely available online—has further underscored the importance of speedy dissemination of research outcomes. Preprints allow researchers to share results with speed, but raise questions about accuracy, misconduct, and our reliance on the “self-correcting” nature of the scientific enterprise. As scientists and health care professionals, as well as the general public, look for information about the pandemic, preprint services are growing in importance. So too are the policy decisions preprint platform leaders make. Even before the crisis struck, it was clear that 2020 would be a year of reckoning for preprints.
    [Show full text]
  • Superresolution Microscopy of the Β-Carboxysome Reveals a Homogeneous Matrix
    Superresolution microscopy of the β-carboxysome reveals a homogeneous matrix The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Niederhuber, Matthew J., Talley J. Lambert, Clarence Yapp, Pamela A. Silver, and Jessica K. Polka. 2017. “Superresolution microscopy of the β-carboxysome reveals a homogeneous matrix.” Molecular Biology of the Cell 28 (20): 2734-2745. doi:10.1091/ mbc.E17-01-0069. http://dx.doi.org/10.1091/mbc.E17-01-0069. Published Version doi:10.1091/mbc.E17-01-0069 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:34651752 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA M BoC | ARTICLE Superresolution microscopy of the β-carboxysome reveals a homogeneous matrix Matthew J. Niederhubera,b,†, Talley J. Lambertc, Clarence Yappd, Pamela A. Silvera,b, and Jessica K. Polkaa,b,* aDepartment of Systems Biology, cDepartment of Cell Biology, and dImage and Data Analysis Core, Harvard Medical School, Boston, MA 02115; bWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115 ABSTRACT Carbon fixation in cyanobacteria makes a major contribution to the global carbon Monitoring Editor cycle. The cyanobacterial carboxysome is a proteinaceous microcompartment that protects Benjamin S. Glick and concentrates the carbon-fixing enzyme ribulose-1,5-bisphosphate carboxylase/oxygen- University of Chicago ase (RuBisCO) in a paracrystalline lattice, making it possible for these organisms to fix CO2 Received: Jan 30, 2017 from the atmosphere.
    [Show full text]
  • Opening up Peer-Review Policies
    FEATURE Opening Up Peer-Review Policies Jessica Polka, Tony Ross-Hellauer, and Gary McDowell Authors in many disciplines favor1 peer review moving out of the shadows and becoming a more transparent practice. Accordingly, platforms and publishers are increasingly implementing open peer review (OPR) to enable new kinds of discourse within the publishing process. Yet, these systems differ in what is revealed when and to whom. OPR can operate on many different parts of the review process. It can infl uence the process of peer review (who can comment on the manuscript, and whether they can communicate with one another) as well as the transparency of information about peer review (the visibility of the manuscript or reviewer names, reports), and it can operate at Photo by Javier Allegue Barros (https://unsplash.com/photos/ many different times, from before submission (i.e., preprints) C7B-ExXpOIE?utm_source=unsplash&utm_medium=referral&utm_ to after publication (i.e., post-publication commenting). One content=creditCopyText) on Unsplash. of us undertook a systematic analysis2 of defi nitions of OPR; this uncovered 7 core traits, which were used in 22 distinct Scholarly activity in open peer review has also made confi gurations. The most frequently used elements of OPR signifi cant progress. In January 2019, results were released were revealing reviewer identities (open identities) and from a trial in which 5 Elsevier journals6 began publishing all publishing reviews (open reports). peer reviews. It showed that each journals’ submission rates increased during the trial. While the rate at which reviewers Growth in open peer-review accepted invitations to review declined, these declines implementations and experiments matched global trends, so may not have been caused by the While open peer review has been practiced by publishers review model.
    [Show full text]
  • Downloads Have Grown Commen- Surately with Their Uploads [10]
    Neuroanatomy and Behaviour, 2020, 2(1), e9. Neuroanatomy ISSN: 2652-1768 and H doi: 10.35430/nab.2020.e9 ε Behaviour PROFESSIONALPERSPECTIVES Enhancing scientific dissemination in neuroscience via preprint peer-review: “Peer Community In Circuit Neuroscience” Marion S. Mercier1, Vincent Magloire1 and Mahesh Karnani2,* 1Institute of Neurology, UCL, London, United Kingdom and 2Institute for Neuroscience, ETH Zürich, Switzerland *[email protected] Abstract The dissemination of scientific results and new technologies in biomedical science is rapidly evolving from an exclusive and fee-oriented publishing system towards more open, free and independent strategies for sharing knowledge. In this context, preprint servers such as bioRxiv answer a very real scientific need by enabling the rapid, free and easy dissemination of findings, regardless of whether these are novel, replicated, or even showcasing negative results. Currently, thousands of manuscripts are being shared via bioRxiv each month, and neuroscience is the largest and fastest growing subject category. However, commenting on bioRxiv is declining and no structured scientific validation such as peer-review is currently available. The Peer Community In (PCI) platform addresses this unmet need by facilitating the rigorous evaluation and validation of preprints, and PCI Circuit Neuroscience (PCI C Neuro) aims to develop and extend this tool for the neuroscience community. Here we discuss PCI C Neuro’s mission, how it works, and why it is an essential initiative in this
    [Show full text]
  • Accelerating Scientific Publication
    Accelerating scientific publication Thierry Galli INSERM & Aviesan ITMO BCDE Ambassador, ASAPbio Twitter: #ASAPbio @jessicapolka 1 Publication is essential to scientific progress Adapted from http://asapbio.org/survey Twitter: #ASAPbio @jessicapolka 3 Publishing isn’t what it used to be Ron Vale, bioRxiv/PNAS 2015 Twitter: #ASAPbio @jessicapolka 4 What to do about it? Problem: fast and open venues are not always ‘impactful’ venues Twitter: #ASAPbio @jessicapolka 5 A preprint is a manuscript posted online before journal-organized peer review Twitter: #ASAPbio @jessicapolka 6 Preprints & journals are compatible Berg et al Science7 2016 Preprint servers have existed for 25 years arXiv: 100,000 manuscripts per year In Biology 8 Preprints are taking off inbiology off taking are Preprints Version 1000 100 200 300 400 500 600 700 800 900 0 1 | asapbio.org janv.-03 juil.-03 janv.-04 arXiv (q-bio w/cross-lists, from arxiv.org stats) bioRxiv (from bioRxiv) PeerJ Preprints (bio/med/life) F1000 Research The Winnower Nature Precedings (manuscripts, from search results) Preprints.org (articles/reviews bio/life/med) in figshare by (filtered PrePubMed) juil.-04 janv.-05 juil.-05 janv.-06 juil.-06 janv.-07 juil.-07 janv.-08 juil.-08 janv.-09 juil.-09 janv.-10 juil.-10 janv.-11 juil.-11 janv.-12 juil.-12 janv.-13 juil.-13 janv.-14 juil.-14 janv.-15 juil.-15 janv.-16 juil.-16 9 •Benefits of preprints •Concerns surrounding preprints •Taking action •Recent updates 10 Problem: Lack of access to literature Preprints are immediately available to everyone around
    [Show full text]
  • Building Synthetic Cellular Organization
    M BoC | PERSPECTIVE Building synthetic cellular organization Jessica K. Polka and Pamela A. Silver Department of Systems Biology, Harvard Medical School, Boston, MA 02115; Wyss Institute for Biologically Inspired Engineering at Harvard University, Boston, MA 02115 ABSTRACT The elaborate spatial organization of cells enhances, restricts, and regulates pro- Monitoring Editor tein–protein interactions. However, the biological significance of this organization has been Keith G. Kozminski difficult to study without ways of directly perturbing it. We highlight synthetic biology tools University of Virginia for engineering novel cellular organization, describing how they have been, and can be, used Received: Jul 30, 2013 to advance cell biology. Revised: Sep 19, 2013 Accepted: Sep 24, 2013 INTRODUCTION Synthetic biology seeks to use cellular modularity to predictably WHY ORGANIZE? build living systems that do useful things. Historically, many of the Specifying molecular localization provides a powerful way of fruits of the field have been genetic circuits—elements that can re- selecting for and against biological interactions resulting in member, report on stimuli, and perform simple computational tasks. tunable mechanisms for regulation (Figure 1). Thus, confining Other engineered products include synthetic genomes, as well as free diffusion, either by reducing its dimensionality or by corral- proteins endowed by design with novel functions. ling it in a physical compartment, not only can protect proteins Synthetic biology’s engineering principles can also be ap- from off-target effects, but also can enhance desirable interac- plied to interrogate and perturb natural cellular function. In fact, tions. For example, the reduction of diffusion dimensionality can nearly every article published in Molecular Biology of the Cell reduce the search time for finding an on-target interaction.
    [Show full text]
  • Building Trust in Preprints: Recommendations for Servers and Other Stakeholders
    Building trust in preprints: recommendations for servers and other stakeholders 1 2 1 3 4 2 Jeffrey Beck ,​ Christine A Ferguson ,​ Kathryn Funk ,​ Brooks Hanson ,​ Melissa Harrison ,​ Michele Ide-Smith ,​ ​ 5 ​ 2 ​ 6 ​ 2 ​ 7 8 ​ Rachael Lammey ,​ Maria Levchenko ,​ Alex Mendonça ,​ Michael Parkin ,​ Naomi C Penfold ,​ Nici Pfeiffer ,​ 7 ​ 7 ​ 9 ​ 5 ​ 10 ​ ​ 11 Jessica K Polka *​ , Iratxe Puebla ,​ Oya Y Rieger ,​ Martyn Rittman ,​ Richard Sever ,​ Sowmya Swaminathan ​ ​ ​ ​ ​ ​ 1. National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, USA 2. EMBL-EBI, Hinxton, UK 3. AGU/ESSOAr, Washington DC, USA 4. eLife, Cambridge, UK 5. Crossref, Lynnfield, USA 6. SciELO, São Paulo, Brazil 7. ASAPbio, San Francisco, USA 8. Center for Open Science, Charlottesville, USA 9. Ithaka S+R, New York, USA 10. Cold Spring Harbor Laboratory, Cold Spring Harbor, USA 11. Nature Research, Springer Nature, London, UK * For correspondence: [email protected] Abstract On January 20 and 21, 2020, ASAPbio, in collaboration with EMBL-EBI and Ithaka S+R, convened over 30 representatives from academia, preprint servers, publishers, funders, and standards, indexing and metadata infrastructure organisations at EMBL-EBI (Hinxton, UK) to develop a series of recommendations for best practices for posting and linking of preprints in the life sciences and ideally the broader research community. We hope that these recommendations offer guidance for new preprint platforms and projects looking to enact best practices
    [Show full text]
  • Publish Peer Reviews Jessica K
    COMMENT HISTORY Seventy-five years TECHNOLOGY Why are PUBLISHING Preprints — what is OBITUARY Burton Richter, since physicist Schrödinger governments in favour of good for science is good for charm-quark Nobel laureate, made waves in biology p.548 digital insecurity? p.550 the public p.553 remembered p.554 ILLUSTRATION BY DAVID PARKINS DAVID BY ILLUSTRATION Publish peer reviews Jessica K. Polka and colleagues call on journals to sign a pledge to make reviewers’ anonymous comments part of the official scientific record. ong shrouded in secrecy, the contents (the latter is owned by Springer Nature) have in Chevy Chase, Maryland — and ASAPbio, of peer review are coming into the been doing so for even longer (see ‘Revealing a non-profit organization that encourages open. In the past decade, outlets peer review’). Last year, the organizers of innovation in life-sciences publishing. We Lsuch as eLife, F1000Research, Royal Society Peer Review Week embraced the topic in a are convinced that publishing referee reports Open Science, Annals of Anatomy, Nature broader discussion of transparency. would better inform authors and readers, Communications, PeerJ and EMBO Press We are representatives of two biomedical improve review practices and boost trust in have begun to publish referee reports. Pub- funders — the UK Wellcome Trust and the science. Right now, less than 3% of scientific lishers including Copernicus, BMJ and BMC Howard Hughes Medical Institute (HHMI) journals allow peer reviews to be ©2018 Spri nger Nature Li mited. All ri ghts reserved. 30 AUGUST 2018 | VOL 560 | NATURE | 545 COMMENT published (see go.nature.com/2weh6vn). example.
    [Show full text]
  • Peer Review and Preprint Policies Are Unclear at Most Major Journals
    bioRxiv preprint doi: https://doi.org/10.1101/2020.01.24.918995; this version posted April 8, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Peer review and preprint policies are unclear at most major journals Thomas Klebel1*, Stefan Reichmann2, Jessica Polka3, Gary McDowell4, Naomi Penfold5, Samantha Hindle6, Tony Ross-Hellauer2 5 1Know-Center GmbH, Graz, Austria 2Graz University of Technology, Institute of Interactive Systems and Data Science, Graz, Austria 3ASAPbio, San Francisco, CA, United States of America 4Lightoller LLC, Chicago, IL, United States of America 10 5eLife Sciences Publications Ltd, Cambridge, Cambridgeshire, Great Britain 6bioRxiv, Cold Spring Harbor Laboratory, NY, United States of America *Corresponding Author E-Mail: [email protected] 15 Abstract Clear and findable publishing policies are important for authors to choose appropriate journals for publication. We investigated the clarity of policies of 171 major academic journals across disciplines regarding peer review and preprinting. 31.6% of journals surveyed do not provide 20 information on the type of peer review they use. Information on whether preprints can be posted or not is unclear in 39.2% of journals. 58.5% of journals offer no clear information on whether reviewer identities are revealed to authors. Around 75% of journals have no clear policy on co- reviewing, citation of preprints, and publication of reviewer identities. Information regarding practices of Open Peer Review is even more scarce, with <20% of journals providing clear 25 information.
    [Show full text]
  • Publish Peer Reviews Jessica K
    COMMENT HISTORY Seventy-five years TECHNOLOGY Why are PUBLISHING Preprints — what is OBITUARY Burton Richter, since physicist Schrödinger governments in favour of good for science is good for charm-quark Nobel laureate, made waves in biology p.548 digital insecurity? p.550 the public p.553 remembered p.554 ILLUSTRATION BY DAVID PARKINS DAVID BY ILLUSTRATION Publish peer reviews Jessica K. Polka and colleagues call on journals to sign a pledge to make reviewers’ anonymous comments part of the official scientific record. ong shrouded in secrecy, the contents (the latter is owned by Springer Nature) have in Chevy Chase, Maryland — and ASAPbio, of peer review are coming into the been doing so for even longer (see ‘Revealing a non-profit organization that encourages open. In the past decade, outlets peer review’). Last year, the organizers of innovation in life-sciences publishing. We Lsuch as eLife, F1000Research, Royal Society Peer Review Week embraced the topic in a are convinced that publishing referee reports Open Science, Annals of Anatomy, Nature broader discussion of transparency. would better inform authors and readers, Communications, PeerJ and EMBO Press We are representatives of two biomedical improve review practices and boost trust in have begun to publish referee reports. Pub- funders — the UK Wellcome Trust and the science. Right now, less than 3% of scientific lishers including Copernicus, BMJ and BMC Howard Hughes Medical Institute (HHMI) journals allow peer reviews to be ©2018 Spri nger Nature Li mited. All ri ghts reserved. 30 AUGUST 2018 | VOL 560 | NATURE | 545 COMMENT published (see go.nature.com/2weh6vn). example.
    [Show full text]
  • Systematic Examination of Preprint Platforms for Use in the Medical and Biomedical Sciences Setting
    Open access Original research BMJ Open: first published as 10.1136/bmjopen-2020-041849 on 29 December 2020. Downloaded from Systematic examination of preprint platforms for use in the medical and biomedical sciences setting Jamie J Kirkham ,1 Naomi C Penfold ,2 Fiona Murphy,3 Isabelle Boutron,4 John P Ioannidis,5 Jessica Polka,2 David Moher 6 To cite: Kirkham JJ, ABSTRACT Strengths and limitations of this study Penfold NC, Murphy F, et al. Objectives The objective of this review is to identify all Systematic examination of preprint platforms with biomedical and medical scope ► We developed robust methodology for systemat- preprint platforms for use in and to compare and contrast the key characteristics and the medical and biomedical ically identifying relevant preprint platforms and policies of these platforms. sciences setting. BMJ Open involved platform owners/representatives wherever Study design and setting Preprint platforms that were 2020;10:e041849. doi:10.1136/ possible to verify data. launched up to 25 June 2019 and have a biomedical and bmjopen-2020-041849 ► We undertook an internal pilot of developing and medical scope according to MEDLINE’s journal selection testing out the data collection form in collaboration ► Prepublication history and criteria were identified using existing lists, web- based with a preprint platform owner and funders. supplemental material for this searches and the expertise of both academic and non- paper is available online. To ► For platforms that had a partner journal and without academic publication scientists. A data extraction form view these files, please visit verification, it was sometimes unclear if the policy was developed, pilot tested and used to collect data from the journal online (http:// dx.
    [Show full text]
  • Charting the Dimensions of Preprint Policies
    ARTICLE https://doi.org/10.18243/eon/2019.12.2.3 Charting the Dimensions of Preprint Policies By Samantha Hindle, PhD archiving. However, policies themselves are often much Content Lead more complex than their representation in SHERPA/ bioRxiv RoMEO, including clauses about versions of the manu- Co-Founder script that may be posted, acceptable servers, licenses PREreview that can be applied to preprints, and what media cover- age is acceptable. In the following sections, we provide a sampling of the variation among journals (emphasis ours). Naomi Penfold, PhD Version of Preprint That Can Be Posted Associate Director • At the Journal of Clinical Oncology, “no revisions ASAPbio should be posted to the preprint server during the manuscript’s peer review process.” (JCO Journal Policies) • “Posting a manuscript to a preprint server while un- der consideration for eNeuro is allowed up until the point of acceptance.” (eNeuro General Information for Authors) Jessica Polka, PhD Types of Servers That Can Be Used Executive Director ASAPbio • The Royal Society of Chemistry journals allow de- position with “non-commercial repositories” such as ArXiv and ChemRxiv. (RSC Processes and Policies) • Development “supports authors who wish to post pri- mary research manuscripts on community preprint servers such as bioRxiv.” (Development Journal Policies) The growing practice of preprinting (that is, publicly sharing manuscripts via online servers prior to the completion of journal-organized peer review) is accelerating the dissemi- nation of scholarly research in many fields. While multiple factors contribute to researchers’ comfort levels with the practice, journal policies influence many authors’ decision to submit a preprint (Figure 1).
    [Show full text]