Npas1+-Nkx2.1+ Neurons Form a Unique Pallidal Neuron Subclass
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The Department of Neurobiology & Anatomy and the Motor
The Neuroscience Graduate Program presents: SHIONA BISWAS ADVISOR: LIN GAN IN A PHD THESIS DEFENSE WEDNESDAY, 28 SEPTEMBER 2016 10:00AM IN WHIPPLE AUDITORIUM (2-6424) The transcription regulator Lmo3 is required for correct cell fate specification in the external globus pallidus. The external globus pallidus (GPe), a core component of the basal ganglia, can powerfully influence the processing of motor information due to its widespread projections to almost all basal ganglia nuclei. Aberrant activity of GPe neurons has been linked to motor symptoms of a variety of movement disorders, such as Parkinson’s Disease, Huntington’s disease and dystonia. While several decades of work had suggested the existence of heterogeneity within GPe GABAergic projection neurons, it is not until recent years that multiple molecular markers have been established to unambiguously define and distinguish between two main GPe neuronal subtypes: the prototypic and arkypallidal neurons. This demarcation is also based on their unique projection patterns, membrane properties and ion channel expression, and consequently, distinct electrophysiological profiles, in both healthy and diseased (Parkinsonian) states. As a result of this, we now have an improved understanding of how these neurons function and encode motor behavior in both healthy and diseased states. A few studies have established some of the basic aspects of GPe development- such as the parts of the developing forebrain from which GPe neurons originate and the embryonic time points during which they are born. However, specific molecular factors required for the development of GPe neurons remain unexplored. For my thesis project, I studied the role of the transcription regulator, Lmo3, in the specification of subsets of external globus pallidus neurons. -
Neurons That Regulate Mouse Torpor
Article Neurons that regulate mouse torpor https://doi.org/10.1038/s41586-020-2387-5 Sinisa Hrvatin1,6 ✉, Senmiao Sun1,2,6, Oren F. Wilcox1, Hanqi Yao1, Aurora J. Lavin-Peter1, Marcelo Cicconet3, Elena G. Assad1, Michaela E. Palmer1, Sage Aronson4, Received: 22 January 2020 Alexander S. Banks5, Eric C. Griffith1 & Michael E. Greenberg1 ✉ Accepted: 7 May 2020 Published online: xx xx xxxx The advent of endothermy, which is achieved through the continuous homeostatic Check for updates regulation of body temperature and metabolism1,2, is a defning feature of mammalian and avian evolution. However, when challenged by food deprivation or harsh environmental conditions, many mammalian species initiate adaptive energy-conserving survival strategies—including torpor and hibernation—during which their body temperature decreases far below its homeostatic set-point3–5. How homeothermic mammals initiate and regulate these hypothermic states remains largely unknown. Here we show that entry into mouse torpor, a fasting-induced state with a greatly decreased metabolic rate and a body temperature as low as 20 °C6, is regulated by neurons in the medial and lateral preoptic area of the hypothalamus. We show that restimulation of neurons that were activated during a previous bout of torpor is sufcient to initiate the key features of torpor, even in mice that are not calorically restricted. Among these neurons we identify a population of glutamatergic Adcyap1-positive cells, the activity of which accurately determines when mice naturally initiate and exit torpor, and the inhibition of which disrupts the natural process of torpor entry, maintenance and arousal. Taken together, our results reveal a specifc neuronal population in the mouse hypothalamus that serves as a core regulator of torpor. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Regulation of Expression and Activity of the Bhlh-PAS Transcription
Regulation of Expression and Activity of the bHLH-PAS Transcription Factor NPAS4 David Christopher Bersten B.Sc. (Biomedical Science), Honours (Biochemistry) A thesis submitted in fulfilment of the requirements for the degree of Doctor of Philosophy Discipline of Biochemistry School of Molecular and Biomedical Science University of Adelaide, Australia June 2014 1 Contents Abstract ................................................................................................................................................... 3 PhD Thesis Declaration ........................................................................................................................... 5 Acknowledgements ................................................................................................................................. 6 Publications ............................................................................................................................................. 8 Conference oral presentations ........................................................................................................... 9 Additional publications ....................................................................................................................... 9 Chapter 1: .............................................................................................................................................. 10 Introduction ..................................................................................................................................... -
Neural Plasticity in the Brain During Neuropathic Pain
biomedicines Review Neural Plasticity in the Brain during Neuropathic Pain Myeong Seong Bak 1, Haney Park 1 and Sun Kwang Kim 1,2,* 1 Department of Science in Korean Medicine, Graduate School, Kyung Hee University, Seoul 02447, Korea; [email protected] (M.S.B.); [email protected] (H.P.) 2 Department of Physiology, College of Korean Medicine, Kyung Hee University, Seoul 02447, Korea * Correspondence: [email protected]; Tel.: +82-2-961-0491 Abstract: Neuropathic pain is an intractable chronic pain, caused by damage to the somatosensory nervous system. To date, treatment for neuropathic pain has limited effects. For the development of efficient therapeutic methods, it is essential to fully understand the pathological mechanisms of neuropathic pain. Besides abnormal sensitization in the periphery and spinal cord, accumulating evidence suggests that neural plasticity in the brain is also critical for the development and mainte- nance of this pain. Recent technological advances in the measurement and manipulation of neuronal activity allow us to understand maladaptive plastic changes in the brain during neuropathic pain more precisely and modulate brain activity to reverse pain states at the preclinical and clinical levels. In this review paper, we discuss the current understanding of pathological neural plasticity in the four pain-related brain areas: the primary somatosensory cortex, the anterior cingulate cortex, the periaqueductal gray, and the basal ganglia. We also discuss potential treatments for neuropathic pain based on the modulation of neural plasticity in these brain areas. Keywords: neuropathic pain; neural plasticity; primary somatosensory cortex; anterior cingulate cortex; periaqueductal grey; basal ganglia Citation: Bak, M.S.; Park, H.; Kim, S.K. -
SUPPLEMENTARY NOTE Co-Activation of GR and NFKB
SUPPLEMENTARY NOTE Co-activation of GR and NFKB alters the repertoire of their binding sites and target genes. Nagesha A.S. Rao1*, Melysia T. McCalman1,*, Panagiotis Moulos2,4, Kees-Jan Francoijs1, 2 2 3 3,5 Aristotelis Chatziioannou , Fragiskos N. Kolisis , Michael N. Alexis , Dimitra J. Mitsiou and 1,5 Hendrik G. Stunnenberg 1Department of Molecular Biology, Radboud University Nijmegen, the Netherlands 2Metabolic Engineering and Bioinformatics Group, Institute of Biological Research and Biotechnology, National Hellenic Research Foundation, Athens, Greece 3Molecular Endocrinology Programme, Institute of Biological Research and Biotechnology, National Hellenic Research Foundation, Greece 4These authors contributed equally to this work 5 Corresponding authors E-MAIL: [email protected] ; TEL: +31-24-3610524; FAX: +31-24-3610520 E-MAIL: [email protected] ; TEL: +30-210-7273741; FAX: +30-210-7273677 Running title: Global GR and NFKB crosstalk Keywords: GR, p65, genome-wide, binding sites, crosstalk SUPPLEMENTARY FIGURES/FIGURE LEGENDS AND SUPPLEMENTARY TABLES 1 Rao118042_Supplementary Fig. 1 A Primary transcript Mature mRNA TNF/DMSO TNF/DMSO 8 12 r=0.74, p< 0.001 r=0.61, p< 0.001 ) 2 ) 10 2 6 8 4 6 4 2 2 0 Fold change (mRNA) (log Fold change (primRNA) (log 0 −2 −2 −2 0 2 4 −2 0 2 4 Fold change (RNAPII) (log2) Fold change (RNAPII) (log2) B chr5: chrX: 56 _ 104 _ DMSO DMSO 1 _ 1 _ 56 _ 104 _ TA TA 1 _ 1 _ 56 _ 104 _ TNF TNF Cluster 1 1 _ Cluster 2 1 _ 56 _ 104 _ TA+TNF TA+TNF 1 _ 1 _ CCNB1 TSC22D3 chr20: chr17: 25 _ 33 _ DMSO DMSO 1 _ 1 _ 25 _ 33 _ TA TA 1 _ 1 _ 25 _ 33 _ TNF TNF Cluster 3 1 _ Cluster 4 1 _ 25 _ 33 _ TA+TNF TA+TNF 1 _ 1 _ GPCPD1 CCL2 chr6: chr22: 77 _ 35 _ DMSO DMSO 1 _ 77 _ 1 _ 35 _ TA TA 1 _ 1 _ 77 _ 35 _ TNF Cluster 5 Cluster 6 TNF 1 _ 1 _ 77 _ 35 _ TA+TNF TA+TNF 1 _ 1 _ TNFAIP3 DGCR6 2 Supplementary Figure 1. -
Neural Circuit and Clinical Insights from Intraoperative Recordings During Deep Brain Stimulation Surgery
brain sciences Perspective Neural Circuit and Clinical Insights from Intraoperative Recordings During Deep Brain Stimulation Surgery Anand Tekriwal 1,2,3 , Neema Moin Afshar 2, Juan Santiago-Moreno 3, Fiene Marie Kuijper 4, Drew S. Kern 1,5, Casey H. Halpern 4, Gidon Felsen 2 and John A. Thompson 1,5,* 1 Department of Neurosurgery, University of Colorado School of Medicine, Aurora, CO 80203, USA 2 Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, CO 80203, USA 3 Medical Scientist Training Program, University of Colorado School of Medicine, Aurora, CO 80203, USA 4 Department of Neurosurgery, Stanford University School of Medicine, Stanford, CA 94305, USA 5 Department of Neurology, University of Colorado School of Medicine, Aurora, CO 80203, USA * Correspondence: [email protected] Received: 28 June 2019; Accepted: 18 July 2019; Published: 20 July 2019 Abstract: Observations using invasive neural recordings from patient populations undergoing neurosurgical interventions have led to critical breakthroughs in our understanding of human neural circuit function and malfunction. The opportunity to interact with patients during neurophysiological mapping allowed for early insights in functional localization to improve surgical outcomes, but has since expanded into exploring fundamental aspects of human cognition including reward processing, language, the storage and retrieval of memory, decision-making, as well as sensory and motor processing. The increasing use of chronic neuromodulation, via deep brain stimulation, for a spectrum of neurological and psychiatric conditions has in tandem led to increased opportunity for linking theories of cognitive processing and neural circuit function. Our purpose here is to motivate the neuroscience and neurosurgical community to capitalize on the opportunities that this next decade will bring. -
A Hierarchical Interpretation of the Functional Organization of the Basal Ganglia
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central HYPOTHESIS AND THEORY ARTICLE published: 11 March 2011 SYSTEMS NEUROSCIENCE doi: 10.3389/fnsys.2011.00013 The arbitration–extension hypothesis: a hierarchical interpretation of the functional organization of the basal ganglia Iman Kamali Sarvestani1,2*, Mikael Lindahl1,2, Jeanette Hellgren-Kotaleski1,2,3 and Örjan Ekeberg1,2 1 Department of Computational Biology, School of Computer Science and Communication, Royal Institute of Technology, Stockholm, Sweden 2 Stockholm Brain Institute, Stockholm, Sweden 3 Department of Neuroscience, Karolinska Institute, Stockholm, Sweden Edited by: Based on known anatomy and physiology, we present a hypothesis where the basal ganglia Federico Bermudez-Rattoni, motor loop is hierarchically organized in two main subsystems: the arbitration system and Universidad Nacional Autónoma de México, Mexico the extension system. The arbitration system, comprised of the subthalamic nucleus, globus Reviewed by: pallidus, and pedunculopontine nucleus, serves the role of selecting one out of several candidate Federico Bermudez-Rattoni, actions as they are ascending from various brain stem motor regions and aggregated in the Universidad Nacional Autónoma de centromedian thalamus or descending from the extension system or from the cerebral cortex. México, Mexico This system is an action-input/action-output system whose winner-take-all mechanism finds Jose Bargas, Universidad Nacional Autónoma de México, Mexico the strongest response among several candidates to execute. This decision is communicated *Correspondence: back to the brain stem by facilitating the desired action via cholinergic/glutamatergic projections Iman Kamali Sarvestani, Department and suppressing conflicting alternatives via GABAergic connections. -
Strand Breaks for P53 Exon 6 and 8 Among Different Time Course of Folate Depletion Or Repletion in the Rectosigmoid Mucosa
SUPPLEMENTAL FIGURE COLON p53 EXONIC STRAND BREAKS DURING FOLATE DEPLETION-REPLETION INTERVENTION Supplemental Figure Legend Strand breaks for p53 exon 6 and 8 among different time course of folate depletion or repletion in the rectosigmoid mucosa. The input of DNA was controlled by GAPDH. The data is shown as ΔCt after normalized to GAPDH. The higher ΔCt the more strand breaks. The P value is shown in the figure. SUPPLEMENT S1 Genes that were significantly UPREGULATED after folate intervention (by unadjusted paired t-test), list is sorted by P value Gene Symbol Nucleotide P VALUE Description OLFM4 NM_006418 0.0000 Homo sapiens differentially expressed in hematopoietic lineages (GW112) mRNA. FMR1NB NM_152578 0.0000 Homo sapiens hypothetical protein FLJ25736 (FLJ25736) mRNA. IFI6 NM_002038 0.0001 Homo sapiens interferon alpha-inducible protein (clone IFI-6-16) (G1P3) transcript variant 1 mRNA. Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15 GALNTL5 NM_145292 0.0001 (GALNT15) mRNA. STIM2 NM_020860 0.0001 Homo sapiens stromal interaction molecule 2 (STIM2) mRNA. ZNF645 NM_152577 0.0002 Homo sapiens hypothetical protein FLJ25735 (FLJ25735) mRNA. ATP12A NM_001676 0.0002 Homo sapiens ATPase H+/K+ transporting nongastric alpha polypeptide (ATP12A) mRNA. U1SNRNPBP NM_007020 0.0003 Homo sapiens U1-snRNP binding protein homolog (U1SNRNPBP) transcript variant 1 mRNA. RNF125 NM_017831 0.0004 Homo sapiens ring finger protein 125 (RNF125) mRNA. FMNL1 NM_005892 0.0004 Homo sapiens formin-like (FMNL) mRNA. ISG15 NM_005101 0.0005 Homo sapiens interferon alpha-inducible protein (clone IFI-15K) (G1P2) mRNA. SLC6A14 NM_007231 0.0005 Homo sapiens solute carrier family 6 (neurotransmitter transporter) member 14 (SLC6A14) mRNA. -
Npas1+-Nkx2.1+ Neurons Are an Integral Part of the Cortico-Pallido-Cortical Loop
Research Articles: Cellular/Molecular Npas1+-Nkx2.1+ Neurons Are an Integral Part of the Cortico-pallido-cortical Loop https://doi.org/10.1523/JNEUROSCI.1199-19.2019 Cite as: J. Neurosci 2019; 10.1523/JNEUROSCI.1199-19.2019 Received: 22 May 2019 Revised: 21 November 2019 Accepted: 26 November 2019 This Early Release article has been peer-reviewed and accepted, but has not been through the composition and copyediting processes. The final version may differ slightly in style or formatting and will contain links to any extended data. Alerts: Sign up at www.jneurosci.org/alerts to receive customized email alerts when the fully formatted version of this article is published. Copyright © 2019 the authors 1 + + 2 Npas1 -Nkx2.1 Neurons Are an Integral Part of the Cortico-pallido-cortical 3 Loop 4 5 Zachary A. Abecassis1*, Brianna L. Berceau1*, Phyo H. Win1, Daniela Garcia1, Harry S. Xenias1, Qiaoling Cui1, 6 Arin Pamukcu1, Suraj Cherian1, Vivian M. Hernández1, Uree Chon2, Byung Kook Lim3, Yongsoo Kim2 , 7 Nicholas J. Justice4,5, Raj Awatramani6, Bryan M. Hooks7, Charles R. Gerfen8, Simina M. Boca9, C. Savio 8 Chan1 9 10 1 Department of Physiology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA 11 2 Department of Neural and Behavioral Sciences, College of Medicine, Penn State University, Hershey, PA, 12 USA 13 3 Neurobiology Section, Biological Sciences Division, University of California San Diego, La Jolla, CA, USA 14 4 Center for Metabolic and degenerative disease, Institute of Molecular Medicine, University of Texas, -
Tick-Tock Hedgehog-Mutual Crosstalk with Liver Circadian Clock Promotes Liver Steatosis
Accepted Manuscript Tick-Tock Hedgehog-Mutual crosstalk with liver circadian clock promotes liver steatosis Eugenia Marbach-Breitrück, Madlen Matz-Soja, Ute Abraham, Wolfgang Schmidt-Heck, Susanne Sales, Christiane Rennert, Matthias Kern, Susanne Aleithe, Luise Spormann, Carlo Thiel, Raffaele Gerlini, Katrin Arnold, Nora Klöting, Reinhard Guthke, Damjana Rozman, Raffaele Teperino, Andrej Shevchenko, Achim Kramer, Rolf Gebhardt PII: S0168-8278(19)30065-0 DOI: https://doi.org/10.1016/j.jhep.2019.01.022 Reference: JHEPAT 7247 To appear in: Journal of Hepatology Received Date: 8 June 2018 Revised Date: 20 December 2018 Accepted Date: 16 January 2019 Please cite this article as: Marbach-Breitrück, E., Matz-Soja, M., Abraham, U., Schmidt-Heck, W., Sales, S., Rennert, C., Kern, M., Aleithe, S., Spormann, L., Thiel, C., Gerlini, R., Arnold, K., Klöting, N., Guthke, R., Rozman, D., Teperino, R., Shevchenko, A., Kramer, A., Gebhardt, R., Tick-Tock Hedgehog-Mutual crosstalk with liver circadian clock promotes liver steatosis, Journal of Hepatology (2019), doi: https://doi.org/10.1016/j.jhep. 2019.01.022 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal -
Understanding the Role of Cholinergic Tone in the Pedunculopontine Tegmental Nucleus
Western University Scholarship@Western Electronic Thesis and Dissertation Repository 7-22-2014 12:00 AM Understanding the role of cholinergic tone in the pedunculopontine tegmental nucleus Kaie Rosborough The University of Western Ontario Supervisor Dr. Vania Prado The University of Western Ontario Graduate Program in Anatomy and Cell Biology A thesis submitted in partial fulfillment of the equirr ements for the degree in Master of Science © Kaie Rosborough 2014 Follow this and additional works at: https://ir.lib.uwo.ca/etd Part of the Behavioral Neurobiology Commons Recommended Citation Rosborough, Kaie, "Understanding the role of cholinergic tone in the pedunculopontine tegmental nucleus" (2014). Electronic Thesis and Dissertation Repository. 2388. https://ir.lib.uwo.ca/etd/2388 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. UNDERSTANDING THE ROLE OF CHOLINERGIC TONE IN THE PEDUNCULOPONTINE TEGMENTAL NUCLEUS Thesis format: Monograph Article by Kaie Rosborough Graduate Program in Anatomy and Cell Biology A thesis submitted in partial fulfillment of the requirements for the degree of Masters of Science The School of Graduate and Postdoctoral Studies The University of Western Ontario London, Ontario, Canada © Kaie Rosborough 2014 ! Abstract To better understand the role of cholinergic signaling in specific regions of the brain, several genetically modified mice targeting the vesicular acetylcholine transporter (VAChT) gene have been generated (Prado et al., 2006; Guzman et al., 2011; de Castro et al., 2009). VAChT stores acetylcholine (ACh) in synaptic vesicles, and changes in this transporter expression directly interferes with ACh release.