Pentraxin-2 Suppresses C-Jun/AP-1 Signaling to Inhibit Progressive Fibrotic Disease
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Pentraxin-3 to Better Delineate Necrotizing Soft Tissue Infection: Not Really! Patrick M
Honore and Spapen Critical Care (2016) 20:173 DOI 10.1186/s13054-016-1319-0 LETTER Open Access Pentraxin-3 to better delineate necrotizing soft tissue infection: not really! Patrick M. Honore* and Herbert D. Spapen See related research by Hansen et al., http://ccforum.biomedcentral.com/articles/10.1186/s13054-016-1210-z Necrotizing soft tissue infection (NSTI) is a devastating assessment and persistently elevated levels during evolv- condition with high morbidity and a dismal prognosis. ing sepsis may contribute to tissue damage and predict Timely and adequate surgery and early aggressive treat- poor patient outcome [2]. Second, when looking closely ment of associated sepsis are imperative to improve at the study results, PTX3 levels appeared to be fairly in survival [1–3]. Pentraxin-3 (PTX3) is a glycoprotein line with PCT concentrations for assessing NSTI- released by endothelial and inflammatory cells upon associated morbidity and mortality. PCT also outper- stimulation by cytokines and endotoxins. In contrast with forms CRP in predicting severity of infection and organ C-reactive protein (CRP) which is produced in the liver in dysfunction in sepsis [4] but is more readily available response to systemic inflammation, PTX3 is thought to than PTX3. Finally, many patients with NSTI develop better reflect local vascular inflammation and bacterial acute kidney injury, necessitating renal replacement load [2]. PTX3 assessment might thus be a more appropri- therapy (RRT) (25 % of the patients studied by Hansen ate marker of severity and prognosis of NSTI. This was et al.!). PTX3 has a molecular weight of approximately corroborated by Hansen et al. -
Human Lectins, Their Carbohydrate Affinities and Where to Find Them
biomolecules Review Human Lectins, Their Carbohydrate Affinities and Where to Review HumanFind Them Lectins, Their Carbohydrate Affinities and Where to FindCláudia ThemD. Raposo 1,*, André B. Canelas 2 and M. Teresa Barros 1 1, 2 1 Cláudia D. Raposo * , Andr1 é LAQVB. Canelas‐Requimte,and Department M. Teresa of Chemistry, Barros NOVA School of Science and Technology, Universidade NOVA de Lisboa, 2829‐516 Caparica, Portugal; [email protected] 12 GlanbiaLAQV-Requimte,‐AgriChemWhey, Department Lisheen of Chemistry, Mine, Killoran, NOVA Moyne, School E41 of ScienceR622 Co. and Tipperary, Technology, Ireland; canelas‐ [email protected] NOVA de Lisboa, 2829-516 Caparica, Portugal; [email protected] 2* Correspondence:Glanbia-AgriChemWhey, [email protected]; Lisheen Mine, Tel.: Killoran, +351‐212948550 Moyne, E41 R622 Tipperary, Ireland; [email protected] * Correspondence: [email protected]; Tel.: +351-212948550 Abstract: Lectins are a class of proteins responsible for several biological roles such as cell‐cell in‐ Abstract:teractions,Lectins signaling are pathways, a class of and proteins several responsible innate immune for several responses biological against roles pathogens. such as Since cell-cell lec‐ interactions,tins are able signalingto bind to pathways, carbohydrates, and several they can innate be a immuneviable target responses for targeted against drug pathogens. delivery Since sys‐ lectinstems. In are fact, able several to bind lectins to carbohydrates, were approved they by canFood be and a viable Drug targetAdministration for targeted for drugthat purpose. delivery systems.Information In fact, about several specific lectins carbohydrate were approved recognition by Food by andlectin Drug receptors Administration was gathered for that herein, purpose. plus Informationthe specific organs about specific where those carbohydrate lectins can recognition be found by within lectin the receptors human was body. -
African-Centric TP53 Variant Increases Iron Accumulation and Bacterial Pathogenesis but Improves Response to Malaria Toxin
ARTICLE There are amendments to this paper https://doi.org/10.1038/s41467-019-14151-9 OPEN African-centric TP53 variant increases iron accumulation and bacterial pathogenesis but improves response to malaria toxin Kumar Sachin Singh1,8, Julia I-Ju Leu2,8, Thibaut Barnoud3,8, Prashanthi Vonteddu1, Keerthana Gnanapradeepan3,4, Cindy Lin5, Qin Liu 3, James C. Barton6, Andrew V. Kossenkov7, Donna L. George2,9*, Maureen E. Murphy3,9* & Farokh Dotiwala 1,9* 1234567890():,; A variant at amino acid 47 in human TP53 exists predominantly in individuals of African descent. P47S human and mouse cells show increased cancer risk due to defective ferrop- tosis. Here, we show that this ferroptotic defect causes iron accumulation in P47S macro- phages. This high iron content alters macrophage cytokine profiles, leads to higher arginase level and activity, and decreased nitric oxide synthase activity. This leads to more productive intracellular bacterial infections but is protective against malarial toxin hemozoin. Proteomics of macrophages reveal decreased liver X receptor (LXR) activation, inflammation and anti- bacterial defense in P47S macrophages. Both iron chelators and LXR agonists improve the response of P47S mice to bacterial infection. African Americans with elevated saturated transferrin and serum ferritin show higher prevalence of the P47S variant (OR = 1.68 (95%CI 1.07–2.65) p = 0.023), suggestive of its role in iron accumulation in humans. This altered macrophage phenotype may confer an advantage in malaria-endemic sub-Saharan Africa. 1 Vaccine and Immunotherapy Center, The Wistar Institute, Philadelphia, PA 19104, USA. 2 Department of Genetics, The Raymond and Ruth Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA. -
TREM-1; Is It a Pivotal Target for Cardiovascular Diseases?
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 3 September 2018 doi:10.20944/preprints201809.0040.v1 Review TREM-1; is It a Pivotal Target for Cardiovascular Diseases? Kouassi T Kouassi 1†, Palanikumar Gunasekar 1†, Devendra. K. Agrawal 1 and Gopal Jadhav 1,* 1 Department of Clinical and Translational Sciences, School of Medicine, Creighton University; Omaha, NE 68178, USA. Emails: [email protected] (T. K.); [email protected] (K. G); [email protected] (D. K.) * Correspondence: [email protected] (G. J.); Tel.: +1-402-280-1821 † The authors contributed equally Abstract: Cardiovascular Diseases (CVDs) are still menacing and killing adults worldwide, notwithstanding the tremendous effort, to decrease their related mortality and morbidity. Lately, a growing body of evidences indicated that inflammation plays a pivotal role in the pathogenesis and complications of CVDs. A receptor of the immunoglobulin superfamily, triggering receptor expressed on myeloid cells -1 (TREM-1) was shown to induce and to amplify the inflammation in both acute and chronic diseases pathogenesis and progression and hence it is one of the important factors that complicates CVDs. Thus, studies endeavored to investigate the role played by TREM-1 in CVDs with respect to their etiologies, complications and possible therapeutics. We examined here, for the first time, the most relevant studies regarding TREM-1 involvement in CVDs. We summarized the finding after critically analyzing them and made some suggestions for furtherance of the investigations with the aim to utilize TREM-1 and its pathways for diagnostic, management and prognosis of CVDs. Overall, TREM-1 was found to be involved in the pathogenesis of acute and chronic cardiovascular conditions like Acute myocardial infraction (AMI) and atherosclerosis as well. -
The Role of Triggering Receptor Expressed on Myeloid Cells-2 in Inflammation
The role of triggering receptor expressed on myeloid cells-2 in inflammation Doctoral Thesis at the Medical University of Vienna for obtaining the academic degree Doctor of Philosophy (PhD) submitted by Maga. Riem Gawish Supervisor: Univ. Prof. Dr. Sylvia Knapp, PhD Laboratory of Infection Biology, Dept. of Medicine 1, Medical University Vienna Center for Molecular Medicine of the Austrian Academy of Sciences Währinger Gürtel 18-20, 1090 Vienna, Austria Vienna, 03/2015 The role of triggering receptor expressed on myeloid cells-2 in inflammation Riem Gawish Table of contents Declaration ................................................................................................................................. 5 List of Figures ............................................................................................................................ 6 List of tables ............................................................................................................................... 8 Abstract ...................................................................................................................................... 9 Kurzfassung ................................................................................................................................ 9 Publications arising from this thesis ......................................................................................... 12 Abbreviations (alphabetically ordered) .................................................................................... 13 -
Supplementary Figure 1. Network Map Associated with Upregulated Canonical Pathways Shows Interferon Alpha As a Key Regulator
Supplementary Figure 1. Network map associated with upregulated canonical pathways shows interferon alpha as a key regulator. IPA core analysis determined interferon-alpha as an upstream regulator in the significantly upregulated genes from RNAseq data from nasopharyngeal swabs of COVID-19 patients (GSE152075). Network map was generated in IPA, overlaid with the Coronavirus Replication Pathway. Supplementary Figure 2. Network map associated with Cell Cycle, Cellular Assembly and Organization, DNA Replication, Recombination, and Repair shows relationships among significant canonical pathways. Significant pathways were identified from pathway analysis of RNAseq from PBMCs of COVID-19 patients. Coronavirus Pathogenesis Pathway was also overlaid on the network map. The orange and blue colors in indicate predicted activation or predicted inhibition, respectively. Supplementary Figure 3. Significant biological processes affected in brochoalveolar lung fluid of severe COVID-19 patients. Network map was generated by IPA core analysis of differentially expressed genes for severe vs mild COVID-19 patients in bronchoalveolar lung fluid (BALF) from scRNA-seq profile of GSE145926. Orange color represents predicted activation. Red boxes highlight important cytokines involved. Supplementary Figure 4. 10X Genomics Human Immunology Panel filtered differentially expressed genes in each immune subset (NK cells, T cells, B cells, and Macrophages) of severe versus mild COVID-19 patients. Three genes (HLA-DQA2, IFIT1, and MX1) were found significantly and consistently differentially expressed. Gene expression is shown per the disease severity (mild, severe, recovered) is shown on the top row and expression across immune cell subsets are shown on the bottom row. Supplementary Figure 5. Network map shows interactions between differentially expressed genes in severe versus mild COVID-19 patients. -
Divergent Neuroinflammatory Regulation of Microglial TREM Expression and Involvement of NF-Κb
Edinburgh Research Explorer Divergent neuroinflammatory regulation of microglial TREM expression and involvement of NF-B Citation for published version: Owens, R, Grabert, K, Davies, CL, Alfieri, A, Antel, JP, Healy, LM & McColl, BW 2017, 'Divergent neuroinflammatory regulation of microglial TREM expression and involvement of NF-B', Frontiers in Cellular Neuroscience, vol. 11, 56. https://doi.org/10.3389/fncel.2017.00056 Digital Object Identifier (DOI): 10.3389/fncel.2017.00056 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: Frontiers in Cellular Neuroscience Publisher Rights Statement: Copyright © 2017 Owens, Grabert, Davies, Alfieri, Antel, Healy and McColl. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. -
Integrated Bioinformatics Approach to Understand Immune-Related Key
Integrated bioinformatics approach to understand immune-related key genes and pathways in chronic spontaneous urticaria wenxing su Second Aliated Hospital of Soochow University biao huang First Aliated Hospital of Soochow University ying zhao Second Aliated Hospital of Soochow University xiaoyan zhang Second Aliated Hospital of Soochow University lu chen second aliated hospital of soochow university jiang ji ( [email protected] ) Second Aliated Hospital of Soochow University qingqing Jiao rst aliated hospital of soochow university Research Keywords: Chronic spontaneous urticaria, bioinformatical analysis, differentially expressed genes, immune inltration Posted Date: December 31st, 2020 DOI: https://doi.org/10.21203/rs.3.rs-137346/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/29 Abstract Background Chronic spontaneous urticaria (CSU) refers to recurrent urticaria that lasts for more than 6 weeks in the absence of an identiable trigger. Due to its recurrent wheal and severe itching, CSU seriously affects patients' life quality. There is currently no radical cure for it and its vague pathogenesis limits the development of targeted therapy. With the goal of revealing the underlying mechanism, two data sets with accession numbers GSE57178 and GSE72540 were downloaded from the Gene Expression Omnibus (GEO) database. After identifying the differentially expressed genes (DEGs) of CSU skin lesion samples and healthy controls, four kinds of analyses were performed, namely functional annotation, protein- protein interaction (PPI) network and module construction, co-expression and drug-gene interaction prediction analysis, and immune and stromal cells deconvolution analyses. Results 92 up-regulated genes and 7 down-regulated genes were selected for subsequent analyses. -
Macrophage Expression and Prognostic Significance of the Long Pentraxin PTX3 in COVID-19
medRxiv preprint doi: https://doi.org/10.1101/2020.06.26.20139923; this version posted June 29, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. MACROPHAGE EXPRESSION AND PROGNOSTIC SIGNIFICANCE OF THE LONG PENTRAXIN PTX3 IN COVID-19 Enrico Brunetta1,2*, Marco Folci1,2*, Barbara Bottazzi1*, Maria De Santis1, Alessandro Protti1,2, Sarah Mapelli1, Roberto Leone1, Ilaria My1,2, Monica Bacci1, Veronica Zanon1, Gianmarco Spata1, Andrea Gianatti3, Marina Sironi1, Claudio Angelini1, Cecilia Garlanda1,2§, Michele Ciccarelli1§, Maurizio Cecconi1,2§, Alberto Mantovani1,2,4§. *equal contributors §corresponding authors 1 Humanitas Clinical and Research Center – IRCCS, via Manzoni 56, 20089 Rozzano (Milan), Italy; 2 Department of Biomedical Sciences, Humanitas University, Via Rita Levi Montalcini 4, 20090 Pieve Emanuele (Milan), Italy; 3 Department of Laboratory Medicine, Anatomic Pathology, Azienda Ospedaliera ASST Papa Giovanni XXIII, Bergamo, Italy. 4 The William Harvey Research Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ. Support This work was partially supported by the Dolce & Gabbana fashion house and by Italian Ministry of Health. Acknowledgements We are grateful to Prof. Alessandro Rambaldi and Dr. Giovanni Gritti (Azienda Ospedaliera ASST Papa Giovanni XXIII, Bergamo, Italy) for helpful discussion. We also acknowledge the work and contribution of Monica Rimoldi, Paolo Tentorio and Sonia Valentino (Humanitas Clinical and Research Center, Rozzano, Milano, Italy) for their tireless work on the collection of biological samples from COVID-19 patients. NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. -
Complement in Tumourigenesis and the Response to Cancer Therapy
cancers Review Complement in Tumourigenesis and the Response to Cancer Therapy Rebecca M. O’Brien 1,2, Aoife Cannon 1, John V. Reynolds 1, Joanne Lysaght 1,2 and Niamh Lynam-Lennon 1,* 1 Department of Surgery, Trinity St. James’s Cancer Institute, Trinity Translational Medicine Institute, Trinity College Dublin and St. James’s Hospital, Dublin 8, Ireland; [email protected] (R.M.O.); [email protected] (A.C.); [email protected] (J.V.R.); [email protected] (J.L.) 2 Cancer Immunology and Immunotherapy Group, Trinity St. James’s Cancer Institute, Trinity Translational Medicine Institute, Trinity College Dublin and St. James’s Hospital, Dublin 8, Ireland * Correspondence: [email protected] Simple Summary: Increasing evidence supports a role for complement in the development of cancer and the response to cancer treatments. Dysregulated complement expression within the tumour microenvironment has been linked to the suppression of anti-tumour immunity and poor clinical outcomes. Complement signals have been demonstrated to alter the immune milieu, promote proliferation and facilitate metastasis. Targeting complement signalling in combination with current treatments may have the potential to achieve improved control of tumour growth. Abstract: In recent years, our knowledge of the complement system beyond innate immunity has progressed significantly. A modern understanding is that the complement system has a multifaceted role in malignancy, impacting carcinogenesis, the acquisition of a metastatic phenotype and response to therapies. The ability of local immune cells to produce and respond to complement components has provided valuable insights into their regulation, and the subsequent remodeling of the tumour Citation: O’Brien, R.M.; Cannon, A.; Reynolds, J.V.; Lysaght, J.; microenvironment. -
Analyses of Pig Genomes Provide
Edinburgh Research Explorer Analyses of pig genomes provide insight into porcine demography and evolution Citation for published version: Groenen, MAM, Archibald, AL, Uenishi, H, Tuggle, CK, Takeuchi, Y, Rothschild, MF, Rogel-Gaillard, C, Park, C, Milan, D, Megens, H-J, Li, S, Larkin, DM, Kim, H, Frantz, LAF, Caccamo, M, Ahn, H, Aken, BL, Anselmo, A, Anthon, C, Auvil, L, Badaoui, B, Beattie, CW, Bendixen, C, Berman, D, Blecha, F, Blomberg, J, Bolund, L, Bosse, M, Botti, S, Zhan Bujie, NV, Bystrom, M, Capitanu, B, Carvalho-Silva, D, Chardon, P, Chen, C, Cheng, R, Choi, S-H, Chow, W, Clark, RC, Clee, C, Crooijmans, RPMA, Dawson, HD, Dehais, P, De Sapio, F, Dibbits, B, Drou, N, Du, Z-Q, Eversole, K, Fadista, J, Fairley, S, Faraut, T, Faulkner, G, Fowler, KE, Fredholm, M, Fritz, E, Gilbert, JGR, Giuffra, E, Gorodkin, J, Griffin, DK, Harrow, JL, Hayward, A, Howe, K, Hu, Z-L, Humphray, SJ, Hunt, T, Hornshoj, H, Jeon, J-T, Jern, P, Jones, M, Jurka, J, Kanamori, H, Kapetanovic, R, Kim, J, Kim, J-H, Kim, K-W, Kim, T-H, Larson, G, Lee, K, Lee, K-T, Leggett, R, Lewin, HA, Li, Y, Liu, W, Loveland, JE, Lu, Y, Lunney, JK, Ma, J, Madsen, O, Mann, K, Matthews, L, McLaren, S, Morozumi, T, Murtaugh, MP, Narayan, J, Dinh Truong Nguyen, NV, Ni, P, Oh, S-J, Onteru, S, Panitz, F, Park, E-W, Park, H-S, Pascal, G, Paudel, Y, Perez-Enciso, M, Ramirez-Gonzalez, R, Reecy, JM, Rodriguez-Zas, S, Rohrer, GA, Rund, L, Sang, Y, Schachtschneider, K, Schraiber, JG, Schwartz, J, Scobie, L, Scott, C, Searle, S, Servin, B, Southey, BR, Sperber, G, Stadler, P, Sweedler, JV, Tafer, H, Thomsen, B, Wali, R, Wang, J, Wang, J, White, S, Xu, X, Yerle, M, Zhang, G, Zhang, J, Zhang, J, Zhao, S, Rogers, J, Churcher, C & Schook, LB 2012, 'Analyses of pig genomes provide insight into porcine demography and evolution', Nature, vol. -
The Genome Sequence of Taurine Cattle
REPORTS second model, the two main conditions were para- different issues. In particular, Bhatt and Camerer found 34. W. Seeley et al., J. Neurosci. 27, 2349 (2007). metrically modulated by the two categories, higher insula and ACC activity when comparing choices to 35. J. Downar, A. Crawley, D. Mikulis, K. Davis, Nat. Neurosci. first-order beliefs in dominance-solvable games. 3, 277 (2000). respectively (SOM, S5.1). The activation of the 3. We are considering here coordination without visual or 36. J. Downar, A. Crawley, D. Mikulis, K. Davis, J. Neurophysiol. precuneus was higher for hard dominance-solvable other contact. Nonhuman primates seem able to 87, 615 (2002). games than for easy ones (Fig. 4A and table S10). coordinate their actions (simultaneously pulling on bars 37. K. Davis et al., J. Neurosci. 25, 8402 (2005). The activation of the insula was higher for the to obtain food) when they are in visual contact (45). 38. K. Taylor, D. Seminowicz, K. Davis, Hum. Brain Mapp., 4. J. Mehta, C. Starmer, R. Sugden, Am. Econ. Rev. 84, 658 in press; published online 15 December 2008; highly focal coordination games than for less fo- (1994). 10.1002/hbm.20705. cal ones (Fig. 4B and table S11). Previous studies 5. T. Schelling, J. Conflict Resolution 2, 203 (1958), p. 211. 39. See (47). The NCI can be interpreted as the probability also found that precuneus activity increased when 6. D. Kahneman, Am. Psychol. 58, 697 (2003). that two randomly chosen individuals make the same the number of planned moves increased (40, 41). 7. K.