BUB1 and BUBR1: Multifaceted Kinases of the Cell Cycle
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Identification of Hub Genes Involved in the Occurrence and Development of Hepatocellular Carcinoma Via Bioinformatics Analysis
ONCOLOGY LETTERS 20: 1695-1708, 2020 Identification of hub genes involved in the occurrence and development of hepatocellular carcinoma via bioinformatics analysis NINGNING MI1,2*, JIE CAO1-6*, JINDUO ZHANG2-5, WENKANG FU1-5, CHONGFEI HUANG1-5, LONG GAO1-5, PING YUE2-5, BING BAI2-5, YANYAN LIN1-5, WENBO MENG1-5 and XUN LI4,5,7 1The First Clinical Medical School, Lanzhou University; 2Department of Special Minimally Invasive Surgery, The First Hospital of Lanzhou University; 3Institute of Genetics, School of Basic Medical Sciences, Lanzhou University; 4Gansu Province Institute of Hepatopancreatobiliary; 5Gansu Province Key Laboratory Biotherapy and Regenerative Medicine; 6Laboratory Department; 7The Fifth Department of General Surgery, The First Hospital of Lanzhou University, Lanzhou, Gansu 730000, P.R. China Received September 28, 2019; Accepted May 7, 2020 DOI: 10.3892/ol.2020.11752 Abstract. Hepatocellular carcinoma (HCC) is a heterogeneous cyclin B1 (CCNB1), cell-division cycle protein 20 (CDC20), malignancy, which is a major cause of cancer morbidity and cyclin-dependent kinase 1, BUB1 mitotic checkpoint serine/ mortality worldwide. Thus, the aim of the present study was threonine kinase β (BUB1B), cyclin A2, nucleolar and spindle to identify the hub genes and underlying pathways of HCC associated protein 1, ubiquitin‑conjugating enzyme E2 C via bioinformatics analyses. The present study screened three (UBE2C) and ZW10 interactor. Furthermore, upregulated datasets, including GSE112790, GSE84402 and GSE74656 CCNB1, CDC20, BUB1B and UBE2C expression levels from the Gene Expression Omnibus (GEO) database, and indicated worse disease-free and overall survival. Moreover, downloaded the RNA-sequencing of HCC from The Cancer a meta-analysis of tumor and healthy tissues in the Oncomine Genome Atlas (TCGA) database. -
Biallelic TRIP13 Mutations Predispose to Wilms Tumor and Chromosome Missegregation
Europe PMC Funders Group Author Manuscript Nat Genet. Author manuscript; available in PMC 2017 July 01. Published in final edited form as: Nat Genet. 2017 July ; 49(7): 1148–1151. doi:10.1038/ng.3883. Europe PMC Funders Author Manuscripts Biallelic TRIP13 mutations predispose to Wilms tumor and chromosome missegregation Shawn Yost#1, Bas de Wolf#2, Sandra Hanks#1, Anna Zachariou1, Chiara Marcozzi3,4, Matthew Clarke1, Richarda de Voer2, Banafsheh Etemad2, Esther Uijttewaal2, Emma Ramsay1, Harriet Wylie1, Anna Elliott1, Susan Picton5, Audrey Smith6, Sarah Smithson7, Sheila Seal1, Elise Ruark1, Gunnar Houge8, Jonathan Pines3,4, Geert J.P.L. Kops2,9,10,+, and Nazneen Rahman1,11,+ 1Division of Genetics and Epidemiology, Institute of Cancer Research, 15 Cotswold Road, London, SM2 5NG, UK 2Hubrecht Institute – KNAW (Royal Netherlands Academy of Arts and Sciences), Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 3The Gurdon Institute and Department of Zoology, University of Cambridge, Cambridge CB2 1QN, UK 4Division of Cancer Biology, The Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK 5Children's and Adolescent Oncology and Haematology Unit, Leeds General Infirmary, Leeds, LS1 3EX, UK 6Yorkshire Regional Clinical Genetics Service, Chapel Allerton Hospital, Chapeltown Road, Leeds, LS7 4SA, UK 7Clinical Genetics Service, St Michael's Hospital, Southwell Street, Bristol, BS2 8EG, UK 8Center for Medical Genetics, Haukeland University Hospital, N-5021 Bergen, Norway 9Cancer Genomics Netherlands, Utrecht, The Netherlands 10Center for Molecular 11 Europe PMC Funders Author Manuscripts Medicine, University Medical Center Utrecht, 3584 CG, Utrecht, The Netherlands Cancer Genetics Unit, Royal Marsden NHS Foundation Trust, London, UK SM2 5PT, UK # These authors contributed equally to this work. -
Supplementary Data
SUPPLEMENTARY DATA A cyclin D1-dependent transcriptional program predicts clinical outcome in mantle cell lymphoma Santiago Demajo et al. 1 SUPPLEMENTARY DATA INDEX Supplementary Methods p. 3 Supplementary References p. 8 Supplementary Tables (S1 to S5) p. 9 Supplementary Figures (S1 to S15) p. 17 2 SUPPLEMENTARY METHODS Western blot, immunoprecipitation, and qRT-PCR Western blot (WB) analysis was performed as previously described (1), using cyclin D1 (Santa Cruz Biotechnology, sc-753, RRID:AB_2070433) and tubulin (Sigma-Aldrich, T5168, RRID:AB_477579) antibodies. Co-immunoprecipitation assays were performed as described before (2), using cyclin D1 antibody (Santa Cruz Biotechnology, sc-8396, RRID:AB_627344) or control IgG (Santa Cruz Biotechnology, sc-2025, RRID:AB_737182) followed by protein G- magnetic beads (Invitrogen) incubation and elution with Glycine 100mM pH=2.5. Co-IP experiments were performed within five weeks after cell thawing. Cyclin D1 (Santa Cruz Biotechnology, sc-753), E2F4 (Bethyl, A302-134A, RRID:AB_1720353), FOXM1 (Santa Cruz Biotechnology, sc-502, RRID:AB_631523), and CBP (Santa Cruz Biotechnology, sc-7300, RRID:AB_626817) antibodies were used for WB detection. In figure 1A and supplementary figure S2A, the same blot was probed with cyclin D1 and tubulin antibodies by cutting the membrane. In figure 2H, cyclin D1 and CBP blots correspond to the same membrane while E2F4 and FOXM1 blots correspond to an independent membrane. Image acquisition was performed with ImageQuant LAS 4000 mini (GE Healthcare). Image processing and quantification were performed with Multi Gauge software (Fujifilm). For qRT-PCR analysis, cDNA was generated from 1 µg RNA with qScript cDNA Synthesis kit (Quantabio). qRT–PCR reaction was performed using SYBR green (Roche). -
Bub1 Positions Mad1 Close to KNL1 MELT Repeats to Promote Checkpoint Signalling
ARTICLE Received 14 Dec 2016 | Accepted 3 May 2017 | Published 12 June 2017 DOI: 10.1038/ncomms15822 OPEN Bub1 positions Mad1 close to KNL1 MELT repeats to promote checkpoint signalling Gang Zhang1, Thomas Kruse1, Blanca Lo´pez-Me´ndez1, Kathrine Beck Sylvestersen1, Dimitriya H. Garvanska1, Simone Schopper1, Michael Lund Nielsen1 & Jakob Nilsson1 Proper segregation of chromosomes depends on a functional spindle assembly checkpoint (SAC) and requires kinetochore localization of the Bub1 and Mad1/Mad2 checkpoint proteins. Several aspects of Mad1/Mad2 kinetochore recruitment in human cells are unclear and in particular the underlying direct interactions. Here we show that conserved domain 1 (CD1) in human Bub1 binds directly to Mad1 and a phosphorylation site exists in CD1 that stimulates Mad1 binding and SAC signalling. Importantly, fusion of minimal kinetochore-targeting Bub1 fragments to Mad1 bypasses the need for CD1, revealing that the main function of Bub1 is to position Mad1 close to KNL1 MELTrepeats. Furthermore, we identify residues in Mad1 that are critical for Mad1 functionality, but not Bub1 binding, arguing for a direct role of Mad1 in the checkpoint. This work dissects functionally relevant molecular interactions required for spindle assembly checkpoint signalling at kinetochores in human cells. 1 The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark. Correspondence and requests for materials should be addressed to G.Z. -
Synergistic Effects of Bubr1 and P53 Deficiency in Tumor Formation
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 5-2006 Synergistic Effects of BubR1 and p53 Deficiency in umorT Formation Walter Guy Wiles University of Tennessee - Knoxville Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Life Sciences Commons Recommended Citation Wiles, Walter Guy, "Synergistic Effects of BubR1 and p53 Deficiency in umorT Formation. " Master's Thesis, University of Tennessee, 2006. https://trace.tennessee.edu/utk_gradthes/1836 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Walter Guy Wiles entitled "Synergistic Effects of BubR1 and p53 Deficiency in umorT Formation." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Master of Science, with a major in Biochemistry and Cellular and Molecular Biology. Sundar Venkatachalam, Major Professor We have read this thesis and recommend its acceptance: Ranjan Ganguly, Ana Kitazono Accepted for the Council: Carolyn R. Hodges Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) To the Graduate Council: I am submitting herewith a thesis written by Walter Guy Wiles IV entitled “Synergistic Effects of BubR1 and p53 Deficiency in Tumor Formation.” I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Master of Science, with a major in Biochemistry and Cellular and Molecular Biology. -
BUB3 That Dissociates from BUB1 Activates Caspase-Independent Mitotic Death (CIMD)
Cell Death and Differentiation (2010) 17, 1011–1024 & 2010 Macmillan Publishers Limited All rights reserved 1350-9047/10 $32.00 www.nature.com/cdd BUB3 that dissociates from BUB1 activates caspase-independent mitotic death (CIMD) Y Niikura1, H Ogi1, K Kikuchi1 and K Kitagawa*,1 The cell death mechanism that prevents aneuploidy caused by a failure of the spindle checkpoint has recently emerged as an important regulatory paradigm. We previously identified a new type of mitotic cell death, termed caspase-independent mitotic death (CIMD), which is induced during early mitosis by partial BUB1 (a spindle checkpoint protein) depletion and defects in kinetochore–microtubule attachment. In this study, we have shown that survived cells that escape CIMD have abnormal nuclei, and we have determined the molecular mechanism by which BUB1 depletion activates CIMD. The BUB3 protein (a BUB1 interactor and a spindle checkpoint protein) interacts with p73 (a homolog of p53), specifically in cells wherein CIMD occurs. The BUB3 protein that is freed from BUB1 associates with p73 on which Y99 is phosphorylated by c-Abl tyrosine kinase, resulting in the activation of CIMD. These results strongly support the hypothesis that CIMD is the cell death mechanism protecting cells from aneuploidy by inducing the death of cells prone to substantial chromosome missegregation. Cell Death and Differentiation (2010) 17, 1011–1024; doi:10.1038/cdd.2009.207; published online 8 January 2010 Aneuploidy – the presence of an abnormal number of of spindle checkpoint activity.20,21 -
Bioinformatics Analysis of BUB1 Expression and Gene Regulation Network in Lung Adenocarcinoma
Bioinformatics analysis of BUB1 expression and gene regulation network in lung adenocarcinoma Luyao Wang ( [email protected] ) Qingdao University Xue Yang Qingdao University Ning An Qingdao University Jia Liu Qingdao University Research article Keywords: bioinformatics analysis; BUB1; lung adenocarcinoma Posted Date: July 9th, 2019 DOI: https://doi.org/10.21203/rs.2.11120/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at Translational Cancer Research on August 1st, 2020. See the published version at https://doi.org/10.21037/tcr-20-1045. Page 1/22 Abstract Lung adenocarcinoma is the most common type of lung cancer with high morbidity and mortality. Potential mechanisms and therapeutic targets of lung adenocarcinoma need further study. BUB1 (BUB1 mitotic checkpoint serine/threonine kinase) encodes a serine/threonine protein kinase which is critical in the mitosis. It is associated with poor prognosis in multiple cancer types. Oncomine database was used to determine the differential expression of BUB1 in normal and lung adenocarcinoma tissues, while UALCAN was used to perform analysis of the relative expression and survival of BUB1 between tumor and normal tissues in different tumor subgroups. We used the cBioPortal for Cancer Genomics to perform GO analysis and KEGG analysis of the top 50 altered neighbor genes of BUB1. The LinkedOmics database was used to determine differential gene expression with BUB1 and to perform functional analysis. The kinase, miRNA and transcription factor target networks correlated with BUB1 were also analysed by LinkedOmics database. The results revealed that BUB1 was highly expressed in lung adenocarcinoma patients. -
Bub1 Is Essential for Assembly of the Functional Inner Centromere
JCB: ARTICLE Bub1 is essential for assembly of the functional inner centromere Yekaterina Boyarchuk,1,2 Adrian Salic,3 Mary Dasso,1 and Alexei Arnaoutov1 1Laboratory of Gene Regulation and Development, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892 2Institute of Cytology, Russian Academy of Sciences, St. Petersburg, 199004, Russia 3Department of Cell Biology, Harvard Medical School, Boston, MA 02115 uring mitosis, the inner centromeric region (ICR) Depletion of Bub1 from Xenopus laevis egg extract or recruits protein complexes that regulate sister from HeLa cells resulted in both destabilization and dis- D chromatid cohesion, monitor tension, and modu- placement of chromosomal passenger complex (CPC) from late microtubule attachment. Biochemical pathways that the ICR. Moreover, soluble Bub1 controls the binding of govern formation of the inner centromere remain elusive. Sgo to chromatin, whereas the CPC restricts loading of The kinetochore protein Bub1 was shown to promote Sgo specifi cally onto centromeres. We further provide evi- assembly of the outer kinetochore components, such dence that Bub1 kinase activity is pivotal for recruitment of as BubR1 and CENP-F, on centromeres. Bub1 was also all of these components. Together, our fi ndings demon- implicated in targeting of Shugoshin (Sgo) to the ICR. We strate that Bub1 acts at multiple points to assure the cor- show that Bub1 works as a master organizer of the ICR. rect kinetochore formation. Introduction Attachment of chromosomes to spindle microtubules (MTs) thus, controlling the polymerization/depolymerization state of is performed by kinetochores, which are large proteinaceous tubulin fi laments to achieve correct end-on attachment of MTs structures that assemble at the centromeric regions of each sis- to the kinetochore (Andrews et al., 2004; Lan et al., 2004). -
How Does SUMO Participate in Spindle Organization?
cells Review How Does SUMO Participate in Spindle Organization? Ariane Abrieu * and Dimitris Liakopoulos * CRBM, CNRS UMR5237, Université de Montpellier, 1919 route de Mende, 34090 Montpellier, France * Correspondence: [email protected] (A.A.); [email protected] (D.L.) Received: 5 July 2019; Accepted: 30 July 2019; Published: 31 July 2019 Abstract: The ubiquitin-like protein SUMO is a regulator involved in most cellular mechanisms. Recent studies have discovered new modes of function for this protein. Of particular interest is the ability of SUMO to organize proteins in larger assemblies, as well as the role of SUMO-dependent ubiquitylation in their disassembly. These mechanisms have been largely described in the context of DNA repair, transcriptional regulation, or signaling, while much less is known on how SUMO facilitates organization of microtubule-dependent processes during mitosis. Remarkably however, SUMO has been known for a long time to modify kinetochore proteins, while more recently, extensive proteomic screens have identified a large number of microtubule- and spindle-associated proteins that are SUMOylated. The aim of this review is to focus on the possible role of SUMOylation in organization of the spindle and kinetochore complexes. We summarize mitotic and microtubule/spindle-associated proteins that have been identified as SUMO conjugates and present examples regarding their regulation by SUMO. Moreover, we discuss the possible contribution of SUMOylation in organization of larger protein assemblies on the spindle, as well as the role of SUMO-targeted ubiquitylation in control of kinetochore assembly and function. Finally, we propose future directions regarding the study of SUMOylation in regulation of spindle organization and examine the potential of SUMO and SUMO-mediated degradation as target for antimitotic-based therapies. -
In Silico Analysis of Deleterious Single Nucleotide Polymorphisms in Human BUB1 Mitotic Checkpoint Serine/Threonine Kinase B Gene
ÔØ ÅÒÙ×Ö ÔØ In silico analysis of deleterious single nucleotide polymorphisms in human BUB1 mitotic checkpoint serine/threonine kinase B gene Fatemeh Akhoundi, Nikpour Parvaneh, Emadi-Baygi Modjtaba PII: S2214-5400(16)30015-9 DOI: doi: 10.1016/j.mgene.2016.05.002 Reference: MGENE 211 To appear in: Meta Gene Received date: 23 September 2015 Revised date: 12 April 2016 Accepted date: 6 May 2016 Please cite this article as: Akhoundi, Fatemeh, Parvaneh, Nikpour, Modjtaba, Emadi- Baygi, In silico analysis of deleterious single nucleotide polymorphisms in human BUB1 mitotic checkpoint serine/threonine kinase B gene, Meta Gene (2016), doi: 10.1016/j.mgene.2016.05.002 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. ACCEPTED MANUSCRIPT In silico analysis of Deleterious Single Nucleotide Polymorphisms in Human BUB1 Mitotic Checkpoint Serine/Threonine Kinase B Gene Fatemeh Akhoundi; Nikpour Parvaneh; Emadi-Baygi Modjtaba Saman Road, Shahrekord, Chaharmahal-Bakhtiari, Iran Abstract One of the major challenges in the analysis of human genetic variation is to distinguish mutations that are functionally neutral from those that contribute to disease. BubR1 is a key protein mediating spindle-checkpoint activation that plays a role in the inhibition of the anaphase-promoting complex/cyclosome (APC/C), delaying the onset of anaphase and ensuring proper chromosome segregation. -
Potential Sperm Contributions to the Murine Zygote Predicted by in Silico Analysis
REPRODUCTIONRESEARCH Potential sperm contributions to the murine zygote predicted by in silico analysis Panagiotis Ntostis1,2, Deborah Carter3, David Iles1, John Huntriss1, Maria Tzetis2 and David Miller1 1Leeds Institute of Cardiovascular and Metabolic Medicine, University of Leeds, Leeds, West Yorkshire, UK, 2Department of Medical Genetics, St. Sophia’s Children Hospital, School of Medicine, National and Kapodistrian University of Athens, Athens, Attiki, Greece and 3Leeds Institute of Molecular Medicine, University of Leeds, Leeds, West Yorkshire, UK Correspondence should be addressed to D Miller; Email: [email protected] Abstract Paternal contributions to the zygote are thought to extend beyond delivery of the genome and paternal RNAs have been linked to epigenetic transgenerational inheritance in different species. In addition, sperm–egg fusion activates several downstream processes that contribute to zygote formation, including PLC zeta-mediated egg activation and maternal RNA clearance. Since a third of the preimplantation developmental period in the mouse occurs prior to the first cleavage stage, there is ample time for paternal RNAs or their encoded proteins potentially to interact and participate in early zygotic activities. To investigate this possibility, a bespoke next-generation RNA sequencing pipeline was employed for the first time to characterise and compare transcripts obtained from isolated murine sperm, MII eggs and pre-cleavage stage zygotes. Gene network analysis was then employed to identify potential interactions between paternally and maternally derived factors during the murine egg-to-zygote transition involving RNA clearance, protein clearance and post-transcriptional regulation of gene expression. Our in silico approach looked for factors in sperm, eggs and zygotes that could potentially interact co-operatively and synergisticallyp during zygote formation. -
TALEN-Mediated Single-Base-Pair Editing Identification of an Intergenic Mutation Upstream of BUB1B As Causative Of
TALEN-mediated single-base-pair editing identification SEE COMMENTARY of an intergenic mutation upstream of BUB1B as causative of PCS (MVA) syndrome Hiroshi Ochiaia,b,1, Tatsuo Miyamotoa,1, Akinori Kanaic, Kosuke Hosobaa, Tetsushi Sakumab, Yoshiki Kudod, Keiko Asamie, Atsushi Ogawae, Akihiro Watanabee, Tadashi Kajiif, Takashi Yamamotob, and Shinya Matsuuraa,2 aDepartment of Genetics and Cell Biology, Research Institute for Radiation Biology and Medicine, Hiroshima University, Hiroshima 734-8553, Japan; bDepartment of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan; cDepartment of Molecular Oncology, Research Institute for Radiation Biology and Medicine, Hiroshima University, Hiroshima 734-8553, Japan; dDepartment of Obstetrics and Gynecology, Graduate School of Biomedical Sciences, Hiroshima University, Hiroshima 734-8551, Japan; eDepartment of Pediatrics, Niigata Cancer Center Hospital, Niigata 951-8566, Japan; and fHachioji, Tokyo 192-0023, Japan Edited by Albert de la Chapelle, Ohio State University Comprehensive Cancer Center, Columbus, OH, and approved November 20, 2013 (received for review September 11, 2013) Cancer-prone syndrome of premature chromatid separation with reported monoallelic BUB1B mutations in seven Japanese families mosaic variegated aneuploidy [PCS (MVA) syndrome] is a rare au- (2), all of which had one null mutation in the first allele but no tosomal recessive disorder characterized by constitutional aneu- second mutation was found in the opposite allele despite the de- ploidy and a high risk of childhood cancer. We previously reported crease in BUB1B transcripts and a conserved BUB1B haplotype. monoallelic mutations in the BUB1B gene (encoding BUBR1) in seven The molecular basis of the second alleles was therefore unknown.