Ana Rita Ramos Diniz De Quadros E Costa

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Ana Rita Ramos Diniz De Quadros E Costa UNIVERSIDADE DE LISBOA FACULDADE DE FARMÁCIA ! NEW PREVENTION AND TREATMENT STRATEGIES FOR HIV INFECTION Ana Rita Ramos Diniz de Quadros e Costa Orientadores: Prof. Doutor Nuno Eduardo Moura dos Santos Taveira Prof. Doutor José António Frazão Moniz Pereira Tese especialmente elaborada para a obtenção do grau de Doutor em Farmácia, especialidade Microbiologia 2018 UNIVERSIDADE DE LISBOA FACULDADE DE FARMÁCIA ! NEW PREVENTION AND TREATMENT STRATEGIES FOR HIV INFECTION Ana Rita Ramos Diniz de Quadros e Costa Orientadores: Prof. Doutor Nuno Eduardo Moura dos Santos Taveira Prof. Doutor José António Frazão Moniz Pereira Tese especialmente elaborada para a obtenção do grau de Doutor em Farmácia, especialidade Microbiologia Júri Presidente: Doutora Matilde da Luz dos Santos Duque da Fonseca e Castro, Professora Catedrática e Diretora da Faculdade de Farmácia da Universidade de Lisboa, Presidente do júri por delegação de competências; Vogais: Doutor Bruno Filipe Carmelino Cardoso Sarmento, Investigador Auxiliar do Instituto de Investigação e Inovação em Saúde da Universidade do Porto; Doutor Nuno Eduardo Moura dos Santos Costa Taveira, Professor Catedrático do Instituto Universitário Egas Moniz, Orientador; Doutora Maria Helena de Sousa Barroso, Professora Associada do Instituto Universitário Egas Moniz; Doutora Emília de Jesus da Encarnação Valadas, Professora Associada da Faculdade de Medicina da Universidade de Lisboa; Doutor João Manuel Braz Gonçalves. Professor Associado com Agregação da Faculdade de Farmácia da Universidade de Lisboa. 2018 Todas as afirmações efetuadas no presente documento são da exclusiva responsabilidade da sua autora, não cabendo qualquer responsabilidade à Faculdade de Farmácia, Universidade de Lisboa pelos conteúdos nele apresentados. Ana Rita Ramos Diniz de Quadros e Costa teve o apoio financeiro da Fundação para a Ciência e Tecnologia através de uma bolsa de doutoramento (SFRH/BD/89140/2012). !i !ii “An inefficient virus kills its host. A clever virus stays with it” – James Lovelock !iii !iv Ao Flávio e ao Francisco !v AGRADECIMENTOS Quanto iniciei o meu doutoramento, tinha acabado de concluir o Mestrado Integrado em Ciên- cias Farmacêuticas e não sabia ao certo o que me esperava. Ao longo destes anos aprendi muito. Aprendi que fazer investigação é gerir tempo, recursos e expectativas. É ir ao laboratório à meia noite ou ao sábado revelar um ensaio, porque são as células e os vírus que mandam e ditam os time-points. É repetir 10 vezes a mesma experiência, para um dia ela dar certo e fi- carmos a pensar “Valeu a pena! Vamos comemorar!”. É ter orgulho em ver um artigo publicado com o nosso nome, fruto do nosso trabalho. E acima de tudo é ficar com a sensação de que se sabe muito pouco, pois ainda há tanta coisa para aprender sobre o tema que estudamos. Ao longo deste percurso, muitas pessoas contribuiram para a realização desta tese e deixo aqui os meus sinceros agradecimentos. Em primeiro lugar agradeço ao meu orientador, o Professor Nuno Taveira pela oportunidade de fazer este doutoramento no seu grupo, pelos valiosos conselhos, incentivo e paciência em to- das as fases deste longo percurso. Obrigada por tudo o que me ensinou, pelos constantes de- safios e por nunca ter desistido de mim. Agradeço também ao Professor José Moniz Pereira, Coordenador do Departamento de Micro- biologia da Faculdade de Farmácia por me ter permitido desenvolver o meu trabalho cientifico na sua unidade e pela sua co-orientação. Aos meus colegas de laboratório Francisco Martin, Rita Calado, Marta Calado, Inês Moranguin- ho, João Perdigão, Carla Silva, Andreia Martins, Claudia Palladino, Marta Giria, Inês Figueiredo, Joana Duarte, Rita Mateus, Joana Vital e Cheila Rocha obrigada pela boa-disposição, amizade, entreajuda, picnics e jantares que partilhámos. O excelente ambiente do nosso grupo deve-se a todos vocês! À Inês Bártolo, obrigada pela oportunidade de trabalhar contigo no nosso projeto e por todo o teu apoio. Contigo aprendi muitas coisas. És uma grande mulher, mãe e profissional. Obrigada Pedro Borrego por estares sempre disponivel para me ajudar a ultrapassar os ob- stáculos que surgiram e sempre com a tua boa-disposição contagiante! És uma referência para mim. À Fundação para a Ciência e Tecnologia agradeço o apoio financeiro que me permitiu desen- volver o meu trabalho. Aos meus pais, obrigada por todo o apoio, segurança e motivação que sempre me deram. Tudo aquilo que consegui alcançar foi graças a vocês. Ao meu filho Francisco, que com um sorriso apaga todas as minhas preocupações. Tu vieste dar luz aos meus dias e mostrar-me que o melhor do mundo é ser tua mãe. Ao meu marido Flávio, o meu melhor amigo e companheiro nos bons e maus momentos, obri- gada pela tua compreensão, amor e dedicação. Tu deste-me a força que precisei e tornaste o caminho mais fácil. Obrigada por tudo, do fundo do coração. !vi PREFACE The research described in this thesis was performed from January of 2012 to April of 2017 at Research Institute for Medicines (iMed ULisboa), Faculty of Pharmacy, Lisbon University, under the supervision of Prof. Doctor Nuno Taveira and the co-supervision of Prof. Doctor José Moniz Pereira. The major findings were communicated in the form of research papers published in peer re- viewed international journals or in preparation, oral communications and poster communica- tions in national and international conferences. This thesis is based on the following publications: Manuscripts in international journals Original manuscripts Diniz AR, Borrego P, Martin F, Figueiredo I, Gomes P, Gonçalves F, Caixas U, Vaz Pinto I, Bara- hona, I, Bártolo I, Taveira N. (2018) Differences in susceptibility patterns of isolates from HIV-2 infected patients to raltegravir and dolutegravir. (submitted to Scientific Reports, currently un- der revision) Briz V, Sepúlveda-Crespo D, Diniz AR, Borrego P, Rodes B, de la Mata FJ, Gómez R, Taveira N, Muñoz-Fernández MA. (2015) Development of water-soluble polyanionic carbosilane den- drimers as novel and highly potent topical anti-HIV-2 microbicides. Nanoscale. 7, p.14669-83 Bártolo I*, Diniz AR*, Borrego P, Ferreira JP, Bronze MR, Barroso H, Pinto R, Cardoso C, Pinto JF, Diaz RC, Broncano PG, Muñoz-Fernández MA, Taveira N. Evaluation of the fusion inhibitor P3 peptide as a potential microbicide to prevent HIV transmission in women. (submitted to Plos- One) *These authors contributed equally to this work. Reviews Diniz AR, Martin F, Martins AR, Bártolo I, Taveira N. Antiretroviral treatment of HIV-2 infection. (submitted) Manuscripts in portuguese journals Reviews Diniz AR, Canhões R, Taveira N. (2015) Pre-exposure prophylaxis for prevention of HIV infec- tion. Revista Portuguesa de Farmacoterapia, vol. 7, p. 15-33. !vii Oral communications in international conferences Taveira N, Diniz AR, Borrego P, Martin F, Gomes P, Gonçalves F, Caixas U, Vaz Pinto I, Barahona, I, Bártolo I. Dolutegravir has a highly potent activity against most primary HIV-2 isolates includ- ing those that have acquired resistance to Raltegravir. – June 1-5, 2017 – ASM Microbe – New Orleans, USA. Diniz AR, Borrego P, Bártolo I, Taveira N. Entry inhibitors are less effective at preventing cell- associated HIV-2 infection than HIV-1. – May 23-24, 2016 – ICHA 2016: 18th International Con- ference on HIV and AIDS – London, United Kingdom; Bártolo I, Diniz AR, Borrego P, Taveira N. Pre-clinical evaluation of a new vaginal microbicide gel for prevention of HIV infection – March 20-24, 2016 – Keystone Symposia Conference, HIV Vac- cines – Resort at Squaw Creek, Olympic Valley, Califórnia, EUA; Oral communications in portuguese conferences Diniz AR, Borrego P, Martin F, Gomes P, Gonçalves F, Caixas U, Vaz Pinto I, Barahona, I, Bártolo I, Taveira N. Dolutegravir has a highly potent activity against most primary HIV-2 isolates includ- ing those that are resistant to raltegravir. – 3-9 May, 2017 – redeSAÚDE’s 4th Annual Confer- ence, ULisboa Innovation Week – Lisbon, Portugal. Calado R, Duarte J, Diniz AR, Borrego P, Marcelino JM, Bártolo I, Clemente S, Taveira N. Expres- sion and antigenecity of gp120 and C2-V3-C3 polypeptides from different HIV-1 genetic forms – July 2nd 2014 – 6th iMed.ULisboa Postgraduate Students Meeting – Faculty of Pharmacy, Lisbon University – Lisbon, Portugal; Diniz AR, Briz V, Borrego P, Palladino C, Rodés C, de la Mata FJ, Gómez R, Muñoz-Fernández MA, Taveira N. Inhibition of cell-free and cell-associated HIV-2 infection: new compounds and new assays. – April 5, 2014 – HIV-2, the forgotten virus. – Molecular Medicine Institute, Lisbon, Portugal. Poster communications in international conferences Bártolo I, Diniz AR, Borrego P, Taveira N. Pre-clinical evaluation of a new vaginal microbicide gel for prevention of HIV infection – March, 20-24 – 2016 Keystone Symposia Conference, HIV Vac- cines – Resort at Squaw Creek, Olympic Valley, Califórnia, EUA; Diniz AR, Briz V, Borrego P, Palladino C, Rodés C, de la Mata FJ, Gómez R, Muñoz-Fernández MA, Taveira N. Entry Inhibitors and Carbosilane Dendrimers are Potent Inhibitors of Cell-free and Cell-Associated HIV-2 Infection – March, 22-27, 2015 – Keystone Symposia Conference, HIV Vaccines: Adaptive Immunity and Beyond – Fairmont Banff Springs, Banff, Alberta, Canada; Calado R, Duarte J, Diniz AR, Borrego P, Marcelino JM, Bártolo I, Clemente S, J Wilton, Taveira N. Envelope C2-V3-C3-specific antibodies correlate with neutralization activity in plasma from HIV-1 infected patients from Angola – March 22-27, 2015 – Keystone Symposia Conference, HIV Vaccines: Adaptive
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