Kif15 Functions As an Active Mechanical Ratchet
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Supporting Information
Supporting Information Goh et al. 10.1073/pnas.1304046110 SI Materials and Methods signal amplification kit was used to amplify the GFP signal Immunofluorescence. For immunofluorescence studies, liver tissue (Perkin-Elmer). was fixed in 4% (vol/vol) paraformaldehyde for 2 h, transferred to a 30% sucrose solution (vol/vol) overnight at 4°C, and sub- ALT and Necrotic Area Quantification. Serum alanine aminotrans- sequently frozen in optimal cutting temperature (OCT) medium. ferase (ALT) levels were measured using an ALT-SL kit (Genzyme To stain for GFP, frozen tissue sections (5 μm) were fixed in Diagnostics). To quantify necrotic cell area, liver sections were 4% paraformaldehyde (vol/vol), permeabilized, and then stained stained with H&E, and 10 random fields from each animal with anti-GFP antibody (1:1,000, Novus Biologicals). A tyramide were analyzed, using ImageJ software. Fig. S1. Immune cell repertoire of regenerating livers. (A and B) Liver regeneration after partial hepatectomy (PH) or toxin-induced injury [carbon tetra- chloride (CCl4)] is associated with recruitment of innate immune cells. Infiltration by innate immune cells was analyzed 2 d after PH or CCl4-mediated injury (n = 4 mice per group). (C and D) The percentages of adaptive immune cells were analyzed 2 d after PH and CCl4-mediated injury in wild-type (WT) BALB/cJ mice (n = 4 mice per group). (E and F) Expression of eotaxin-1 (Ccl11) after PH and/or CCl4-mediated injury (n = 3–8 mice per group and time). *P < 0.05, as de- termined by Student t test. All data are presented as mean ± SEM. -
Ran-GTP Is Non-Essential to Activate Numa for Spindle Pole Focusing, but Dynamically Polarizes HURP to Control Mitotic Spindle
bioRxiv preprint doi: https://doi.org/10.1101/473538; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Ran-GTP is non-essential to activate NuMA for spindle pole focusing, 2 but dynamically polarizes HURP to control mitotic spindle length 3 4 5 Kenta Tsuchiya1#, Hisato Hayashi1#, Momoko Nishina1#, Masako Okumura1#, 6 Yoshikatsu Sato1, Masato T. Kanemaki2,3, Gohta Goshima1, Tomomi Kiyomitsu1,2,4* 7 8 1 Division of Biological Science, Graduate School of Science, Nagoya University, 9 Chikusa-ku, Nagoya 464-8602, Japan. 10 2 Precursory Research for Embryonic Science and Technology (PRESTO) Program, 11 Japan Science and Technology Agency, 4-1-8 Honcho Kawaguchi, Saitama 332-0012, 12 Japan. 13 3 Department of Chromosome Science, National Institute of Genetics, Research 14 Organization of Information and Systems (ROIS), and Department of Genetics, 15 SOKENDAI (The Graduate University of Advanced Studies), Yata 1111, Mishima, 16 Shizuoka 411-8540, Japan. 17 4 Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, 18 Onna-son, Kunigami-gun, Okinawa 904-0495, Japan 19 20 # These authors contributed equally to this work. 21 * Corresponding author: 22 E-mail: [email protected] 23 Phone & Fax: +81-98-966-1609 24 Characters: 5,173 words 25 1 bioRxiv preprint doi: https://doi.org/10.1101/473538; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. -
Molecular Profile of Tumor-Specific CD8+ T Cell Hypofunction in a Transplantable Murine Cancer Model
Downloaded from http://www.jimmunol.org/ by guest on September 25, 2021 T + is online at: average * The Journal of Immunology , 34 of which you can access for free at: 2016; 197:1477-1488; Prepublished online 1 July from submission to initial decision 4 weeks from acceptance to publication 2016; doi: 10.4049/jimmunol.1600589 http://www.jimmunol.org/content/197/4/1477 Molecular Profile of Tumor-Specific CD8 Cell Hypofunction in a Transplantable Murine Cancer Model Katherine A. Waugh, Sonia M. Leach, Brandon L. Moore, Tullia C. Bruno, Jonathan D. Buhrman and Jill E. Slansky J Immunol cites 95 articles Submit online. Every submission reviewed by practicing scientists ? is published twice each month by Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts http://jimmunol.org/subscription Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html http://www.jimmunol.org/content/suppl/2016/07/01/jimmunol.160058 9.DCSupplemental This article http://www.jimmunol.org/content/197/4/1477.full#ref-list-1 Information about subscribing to The JI No Triage! Fast Publication! Rapid Reviews! 30 days* Why • • • Material References Permissions Email Alerts Subscription Supplementary The Journal of Immunology The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2016 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. This information is current as of September 25, 2021. The Journal of Immunology Molecular Profile of Tumor-Specific CD8+ T Cell Hypofunction in a Transplantable Murine Cancer Model Katherine A. -
1 Metabolic Dysfunction Is Restricted to the Sciatic Nerve in Experimental
Page 1 of 255 Diabetes Metabolic dysfunction is restricted to the sciatic nerve in experimental diabetic neuropathy Oliver J. Freeman1,2, Richard D. Unwin2,3, Andrew W. Dowsey2,3, Paul Begley2,3, Sumia Ali1, Katherine A. Hollywood2,3, Nitin Rustogi2,3, Rasmus S. Petersen1, Warwick B. Dunn2,3†, Garth J.S. Cooper2,3,4,5* & Natalie J. Gardiner1* 1 Faculty of Life Sciences, University of Manchester, UK 2 Centre for Advanced Discovery and Experimental Therapeutics (CADET), Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Sciences Centre, Manchester, UK 3 Centre for Endocrinology and Diabetes, Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, UK 4 School of Biological Sciences, University of Auckland, New Zealand 5 Department of Pharmacology, Medical Sciences Division, University of Oxford, UK † Present address: School of Biosciences, University of Birmingham, UK *Joint corresponding authors: Natalie J. Gardiner and Garth J.S. Cooper Email: [email protected]; [email protected] Address: University of Manchester, AV Hill Building, Oxford Road, Manchester, M13 9PT, United Kingdom Telephone: +44 161 275 5768; +44 161 701 0240 Word count: 4,490 Number of tables: 1, Number of figures: 6 Running title: Metabolic dysfunction in diabetic neuropathy 1 Diabetes Publish Ahead of Print, published online October 15, 2015 Diabetes Page 2 of 255 Abstract High glucose levels in the peripheral nervous system (PNS) have been implicated in the pathogenesis of diabetic neuropathy (DN). However our understanding of the molecular mechanisms which cause the marked distal pathology is incomplete. Here we performed a comprehensive, system-wide analysis of the PNS of a rodent model of DN. -
IL21R Expressing CD14+CD16+ Monocytes Expand in Multiple
Plasma Cell Disorders SUPPLEMENTARY APPENDIX IL21R expressing CD14 +CD16 + monocytes expand in multiple myeloma patients leading to increased osteoclasts Marina Bolzoni, 1 Domenica Ronchetti, 2,3 Paola Storti, 1,4 Gaetano Donofrio, 5 Valentina Marchica, 1,4 Federica Costa, 1 Luca Agnelli, 2,3 Denise Toscani, 1 Rosanna Vescovini, 1 Katia Todoerti, 6 Sabrina Bonomini, 7 Gabriella Sammarelli, 1,7 Andrea Vecchi, 8 Daniela Guasco, 1 Fabrizio Accardi, 1,7 Benedetta Dalla Palma, 1,7 Barbara Gamberi, 9 Carlo Ferrari, 8 Antonino Neri, 2,3 Franco Aversa 1,4,7 and Nicola Giuliani 1,4,7 1Myeloma Unit, Dept. of Medicine and Surgery, University of Parma; 2Dept. of Oncology and Hemato-Oncology, University of Milan; 3Hematology Unit, “Fondazione IRCCS Ca’ Granda”, Ospedale Maggiore Policlinico, Milan; 4CoreLab, University Hospital of Parma; 5Dept. of Medical-Veterinary Science, University of Parma; 6Laboratory of Pre-clinical and Translational Research, IRCCS-CROB, Referral Cancer Center of Basilicata, Rionero in Vulture; 7Hematology and BMT Center, University Hospital of Parma; 8Infectious Disease Unit, University Hospital of Parma and 9“Dip. Oncologico e Tecnologie Avanzate”, IRCCS Arcispedale Santa Maria Nuova, Reggio Emilia, Italy ©2017 Ferrata Storti Foundation. This is an open-access paper. doi:10.3324/haematol. 2016.153841 Received: August 5, 2016. Accepted: December 23, 2016. Pre-published: January 5, 2017. Correspondence: [email protected] SUPPLEMENTAL METHODS Immunophenotype of BM CD14+ in patients with monoclonal gammopathies. Briefly, 100 μl of total BM aspirate was incubated in the dark with anti-human HLA-DR-PE (clone L243; BD), anti-human CD14-PerCP-Cy 5.5, anti-human CD16-PE-Cy7 (clone B73.1; BD) and anti-human CD45-APC-H 7 (clone 2D1; BD) for 20 min. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Exacerbated Staphylococcus Aureus Foot
Exacerbated Staphylococcus aureus Foot Infections in Obese/Diabetic Mice Are Associated with Impaired Germinal Center Reactions, Ig Class Switching, and Humoral This information is current as Immunity of October 1, 2021. Christopher W. Farnsworth, Eric M. Schott, Abigail Benvie, Stephen L. Kates, Edward M. Schwarz, Steven R. Gill, Michael J. Zuscik and Robert A. Mooney J Immunol 2018; 201:560-572; Prepublished online 1 June Downloaded from 2018; doi: 10.4049/jimmunol.1800253 http://www.jimmunol.org/content/201/2/560 http://www.jimmunol.org/ Supplementary http://www.jimmunol.org/content/suppl/2018/05/31/jimmunol.180025 Material 3.DCSupplemental References This article cites 46 articles, 20 of which you can access for free at: http://www.jimmunol.org/content/201/2/560.full#ref-list-1 Why The JI? Submit online. by guest on October 1, 2021 • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2018 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Exacerbated Staphylococcus aureus Foot Infections in Obese/Diabetic Mice Are Associated with Impaired Germinal Center Reactions, Ig Class Switching, and Humoral Immunity Christopher W. -
KIF15 Is Involved in Development and Progression of Burkitt Lymphoma Zhao Wang1, Meiting Chen1, Xiaojie Fang1, Huangming Hong2, Yuyi Yao1 and He Huang1*
Wang et al. Cancer Cell Int (2021) 21:261 https://doi.org/10.1186/s12935-021-01967-z Cancer Cell International PRIMARY RESEARCH Open Access KIF15 is involved in development and progression of Burkitt lymphoma Zhao Wang1, Meiting Chen1, Xiaojie Fang1, Huangming Hong2, Yuyi Yao1 and He Huang1* Abstract Background: Burkitt lymphoma (BL) is a highly aggressive, fast-growing B-cell non-Hodgkin’s lymphoma, manifested in several subtypes, including sporadic, endemic, and immunodefciency-related forms, the mechanism of which is still not clear. Abundant evidence reported that KIF15 was involved in the progression of human cancer. The emphasis of this study is to explore the functions of KIF15 in the development of BL. Methods: Firstly, tumor and normal tissues were collected for detecting expression of KIF15 in BL. Lentivirus-medi- ated shRNA knockdown of KIF15 was used to construct BL cell model, which was verifed by qRT-PCR and Western Blot. The cell proliferation was detected by CCK8 assay, cell apoptosis and cell cycle were measured through fow cytometry. Transwell assay was conducted to detect the migration. Results: We frst found that KIF15 is highly expressed in BL. Knockdown of KIF15 can inhibit proliferation and migra- tion, promote apoptosis and arrest the cell cycle. Moreover, KIF15 is involved in BL cell activity through regulating expression of apoptosis-related proteins (Caspase3, Caspase8, HTRA, IGFBP-6, p53, SMAC, sTNF-R1, TNF-β and Bcl-2) and downstream pathways, such as p-Akt, CCND1, CDK6 and PIK3CA. Conclusions: These fndings justify the search for small molecule inhibitors targeting KIF15 as a novel therapeutic strategy in BL. -
Small Gtpase Ran and Ran-Binding Proteins
BioMol Concepts, Vol. 3 (2012), pp. 307–318 • Copyright © by Walter de Gruyter • Berlin • Boston. DOI 10.1515/bmc-2011-0068 Review Small GTPase Ran and Ran-binding proteins Masahiro Nagai 1 and Yoshihiro Yoneda 1 – 3, * highly abundant and strongly conserved GTPase encoding ∼ 1 Biomolecular Dynamics Laboratory , Department a 25 kDa protein primarily located in the nucleus (2) . On of Frontier Biosciences, Graduate School of Frontier the one hand, as revealed by a substantial body of work, Biosciences, Osaka University, 1-3 Yamada-oka, Suita, Ran has been found to have widespread functions since Osaka 565-0871 , Japan its initial discovery. Like other small GTPases, Ran func- 2 Department of Biochemistry , Graduate School of Medicine, tions as a molecular switch by binding to either GTP or Osaka University, 2-2 Yamada-oka, Suita, Osaka 565-0871 , GDP. However, Ran possesses only weak GTPase activ- Japan ity, and several well-known ‘ Ran-binding proteins ’ aid in 3 Japan Science and Technology Agency , Core Research for the regulation of the GTPase cycle. Among such partner Evolutional Science and Technology, Osaka University, 1-3 molecules, RCC1 was originally identifi ed as a regulator of Yamada-oka, Suita, Osaka 565-0871 , Japan mitosis in tsBN2, a temperature-sensitive hamster cell line (3) ; RCC1 mediates the conversion of RanGDP to RanGTP * Corresponding author in the nucleus and is mainly associated with chromatin (4) e-mail: [email protected] through its interactions with histones H2A and H2B (5) . On the other hand, the GTP hydrolysis of Ran is stimulated by the Ran GTPase-activating protein (RanGAP) (6) , in con- Abstract junction with Ran-binding protein 1 (RanBP1) and/or the large nucleoporin Ran-binding protein 2 (RanBP2, also Like many other small GTPases, Ran functions in eukaryotic known as Nup358). -
The Role of P53 in Progression of Cutaneous Squamous Cell Carcinoma
cancers Review The Role of p53 in Progression of Cutaneous Squamous Cell Carcinoma Minna Piipponen 1,2,3,† , Pilvi Riihilä 1,2,† , Liisa Nissinen 1,2 and Veli-Matti Kähäri 1,2,* 1 Department of Dermatology, University of Turku and Turku University Hospital, Hämeentie 11 TE6, FI-20520 Turku, Finland; mmpiip@utu.fi (M.P.); pimati@utu.fi (P.R.); liinis@utu.fi (L.N.) 2 FICAN West Cancer Centre Research Laboratory, University of Turku and Turku University Hospital, Kiinamyllynkatu 10, FI-20520 Turku, Finland 3 Center for Molecular Medicine, Department of Medicine Solna, Dermatology and Venereology Division, Karolinska Institute, 17176 Stockholm, Sweden * Correspondence: veli-matti.kahari@utu.fi; Tel.: +358-2-3131600 † These authors contributed equally to this work. Simple Summary: Skin cancers are the most common types of cancer worldwide, and their incidence is increasing. Epidermal keratinocyte-derived cutaneous squamous cell carcinoma (cSCC) is the most common metastatic skin cancer, and it is associated with poor prognosis in the advanced stage. The most important risk factor for cSCC is long-term exposure to solar ultraviolet radiation, which induces oncogenic mutations in epidermal keratinocytes. The most common mutations are inactivating mutations in tumor suppressor p53, which result in accumulation of additional mutations. Recently, the role of p53 in the progression and invasion of cSCC has also been elucidated. In this review we will discuss the role of p53 in development of cSCC and as a potential new therapeutic target in advanced cSCC. Citation: Piipponen, M.; Riihilä, P.; Abstract: Skin cancers are the most common types of cancer worldwide, and their incidence is Nissinen, L.; Kähäri, V.-M. -
Exploring the Conformational Landscape and Stability of Aurora a Using Ion-Mobility Mass Spectrometry and Molecular Modelling
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.30.458190; this version posted August 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Exploring the conformational landscape and stability of Aurora A using ion-mobility mass spectrometry and molecular modelling Lauren J. Tomlinson1, 2, Matthew Batchelor3, Joscelyn Sarsby1, Dominic P. Byrne2, Philip Brown- ridge1, Richard Bayliss3, Patrick A. Eyers2 and Claire E. Eyers1, 2*. 1 Centre for Proteome Research, Department of Biochemistry & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K. 2 Department of Biochemistry & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K. 3 Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, U.K. *Correspondence: Claire E. Eyers ([email protected]) ABSTRACT: Protein kinase inhibitors are proving highly effective in helping treat a number of non- communicable diseases driven by aberrant kinase signaling. They are also extremely valuable as chemical tools to help delineate cellular roles of kinase signaling complexes. The binding of small molecule inhibitors induces conformational effects on kinase dynamics; evaluating the effect of such interactions can assist in developing specific inhibitors and is deemed imperative to under- stand both inhibition and resistance mechanisms. Using gas-phase ion mobility-mass spectrome- try (IM-MS) we characterized changes in the conformational landscape and stability of the protein kinase Aurora A (Aur A) driven by binding of the physiological activator TPX2 or small molecule inhibition. -
Kif15 Cooperates with Eg5 to Promote Bipolar Spindle Assembly
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 19, 1703–1711, November 3, 2009 ª2009 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2009.08.027 Article Kif15 Cooperates with Eg5 to Promote Bipolar Spindle Assembly Marvin E. Tanenbaum,1 Libor Macu˚ rek,1 Aniek Janssen,1 Eg5 activity does not appear to be required in mammalian cells Erica F. Geers,1 Mo´ nica Alvarez-Ferna´ndez,1 for the maintenance of a bipolar spindle in metaphase [11]. and Rene´ H. Medema1,* Together, these results indicate that additional motors might 1Department of Medical Oncology and Cancer Genomics cooperate with Eg5 to promote bipolar spindle assembly. Centre, University Medical Center Utrecht, Universiteitsweg One motor that has been implicated in spindle bipolarity is 100, 3584 CG Utrecht, The Netherlands the kinesin-12 motor Xklp2: addition of a dominant-negative construct of Xklp2 to Xenopus egg extracts resulted in the formation of monopolar spindles [12]. However, subsequent Summary experiments using protein depletion showed that normal bipolar spindles form after removal of >98% of Xklp2 from Background: The formation of a bipolar spindle is an essential egg extracts [13], strongly suggesting that Xklp2 is in fact step during cell division. Bipolar spindle assembly is driven by not essential for spindle bipolarity. Similarly, depletion of the highly conserved microtubule motor Eg5 (kinesin-5), which Xklp2 does not inhibit bipolar spindle assembly around chro- can slide antiparallel microtubules apart to drive centrosome matin beads [14], and RNA interference (RNAi)-mediated separation.