Incidence and Spectrum of Chromosome Abnormalities
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Chromosome 18
Chromosome 18 Description Humans normally have 46 chromosomes in each cell, divided into 23 pairs. Two copies of chromosome 18, one copy inherited from each parent, form one of the pairs. Chromosome 18 spans about 78 million DNA building blocks (base pairs) and represents approximately 2.5 percent of the total DNA in cells. Identifying genes on each chromosome is an active area of genetic research. Because researchers use different approaches to predict the number of genes on each chromosome, the estimated number of genes varies. Chromosome 18 likely contains 200 to 300 genes that provide instructions for making proteins. These proteins perform a variety of different roles in the body. Health Conditions Related to Chromosomal Changes The following chromosomal conditions are associated with changes in the structure or number of copies of chromosome 18. Distal 18q deletion syndrome Distal 18q deletion syndrome occurs when a piece of the long (q) arm of chromosome 18 is missing. The term "distal" means that the missing piece (deletion) occurs near one end of the chromosome arm. The signs and symptoms of distal 18q deletion syndrome include delayed development and learning disabilities, short stature, weak muscle tone ( hypotonia), foot abnormalities, and a wide variety of other features. The deletion that causes distal 18q deletion syndrome can occur anywhere between a region called 18q21 and the end of the chromosome. The size of the deletion varies among affected individuals. The signs and symptoms of distal 18q deletion syndrome are thought to be related to the loss of multiple genes from this part of the long arm of chromosome 18. -
22Q13.3 Deletion Syndrome
22q13.3 deletion syndrome Description 22q13.3 deletion syndrome, which is also known as Phelan-McDermid syndrome, is a disorder caused by the loss of a small piece of chromosome 22. The deletion occurs near the end of the chromosome at a location designated q13.3. The features of 22q13.3 deletion syndrome vary widely and involve many parts of the body. Characteristic signs and symptoms include developmental delay, moderate to profound intellectual disability, decreased muscle tone (hypotonia), and absent or delayed speech. Some people with this condition have autism or autistic-like behavior that affects communication and social interaction, such as poor eye contact, sensitivity to touch, and aggressive behaviors. They may also chew on non-food items such as clothing. Less frequently, people with this condition have seizures or lose skills they had already acquired (developmental regression). Individuals with 22q13.3 deletion syndrome tend to have a decreased sensitivity to pain. Many also have a reduced ability to sweat, which can lead to a greater risk of overheating and dehydration. Some people with this condition have episodes of frequent vomiting and nausea (cyclic vomiting) and backflow of stomach acids into the esophagus (gastroesophageal reflux). People with 22q13.3 deletion syndrome typically have distinctive facial features, including a long, narrow head; prominent ears; a pointed chin; droopy eyelids (ptosis); and deep-set eyes. Other physical features seen with this condition include large and fleshy hands and/or feet, a fusion of the second and third toes (syndactyly), and small or abnormal toenails. Some affected individuals have rapid (accelerated) growth. -
Chromosome Analysis of Single Cells by High Resolution Comparative Genomic Hybridization After Whole Genome Amplifi Cation Using a Random Fragmentation Approach
Chromosome Analysis of Single Cells by High Resolution Comparative Genomic Hybridization after Whole Genome Amplifi cation Using a Random Fragmentation Approach. Brynn Levy 1, Odelia Nahum 2, Kurt Hirschhorn 2 (1) Department of Pathology, College of Physicians and Surgeons of Columbia University, New York, NY (2) Department of Pediatrics, Mount Sinai School of Medicine, New York, NY Introduction Results The preparation of prometaphase/metaphase spreads is an essential part of WGA followed by CGH was performed on single cells obtained from chromosome analysis. Most samples received for cytogenetic study do not 36 random specimen cultures. The specimens analyzed included normal have a signifi cant number of actively dividing cells that can be arrested in the males, normal females, various trisomies (4, 10, 11, 13, 14, 16 and 21), an prometaphase/metaphase stage of the cell cycle and thus require cell culturing. unbalanced translocation and an iso-22 chromosome (Table 1). There were no Single fetal cells derived from a 2–3 day old embryo or from the maternal false negatives and the correct sex and diagnosis was made in 36/36 cases at circulation can therefore not be karyotyped in the traditional way. Fluorescence 99% confi dence, in 35/36 cases at 99.9% confi dence and in 33/36 cases at in situ hybridization (FISH) with chromosome specifi c probes can enumerate 99.99% confi dence (Table 1). Certain artifactual abnormalities were observed individual chromosomes in an interphase cell and it is now possible through a in addition to the true abnormality in some cases and the impact of these still process of combinatorial labeling to produce 24 differentially colored human needs to be determined in a larger test series. -
Sema4 Noninvasive Prenatal Select
Sema4 Noninvasive Prenatal Select Noninvasive prenatal testing with targeted genome counting 2 Autosomal trisomies 5 Trisomy 21 (Down syndrome) 6 Trisomy 18 (Edwards syndrome) 7 Trisomy 13 (Patau syndrome) 8 Trisomy 16 9 Trisomy 22 9 Trisomy 15 10 Sex chromosome aneuploidies 12 Monosomy X (Turner syndrome) 13 XXX (Trisomy X) 14 XXY (Klinefelter syndrome) 14 XYY 15 Microdeletions 17 22q11.2 deletion 18 1p36 deletion 20 4p16 deletion (Wolf-Hirschhorn syndrome) 20 5p15 deletion (Cri-du-chat syndrome) 22 15q11.2-q13 deletion (Angelman syndrome) 22 15q11.2-q13 deletion (Prader-Willi syndrome) 24 11q23 deletion (Jacobsen Syndrome) 25 8q24 deletion (Langer-Giedion syndrome) 26 Turnaround time 27 Specimen and shipping requirements 27 2 Noninvasive prenatal testing with targeted genome counting Sema4’s Noninvasive Prenatal Testing (NIPT)- Targeted Genome Counting analyzes genetic information of cell-free DNA (cfDNA) through a simple maternal blood draw to determine the risk for common aneuploidies, sex chromosomal abnormalities, and microdeletions, in addition to fetal gender, as early as nine weeks gestation. The test uses paired-end next-generation sequencing technology to provide higher depth across targeted regions. It also uses a laboratory-specific statistical model to help reduce false positive and false negative rates. The test can be offered to all women with singleton, twins and triplet pregnancies, including egg donor. The conditions offered are shown in below tables. For multiple gestation pregnancies, screening of three conditions -
Chromosome Abberrations N Genetic Diseases
Chromosomal Analysis Dr. Monisha Banerjee Professor Molecular & Human Genetics Laboratory Department of Zoology University of Lucknow Lucknow-226007 Chromosome Morphology Telomere Short arm (p) Centromere Arm Long arm (q) Telomere Metacentric Submetacentric Acrocentric Defining Chromosomal Location Arm Region Band Subband 3 2 2 1 2 2 p 1 1 5 1 4 1 3 2 1 1 2 17 q 1 1 . 2 1 1 3 1 2 2 q 3 1 3 2, 3 4 2 1 4 2 Chromosome 17 3 Nomenclature system Visualizing Metaphase Chromosomes • Patient cells are incubated and divide in tissue culture. • Phytohemagglutinin (PHA): stimulates cell division. • Colcemid: arrests cells in metaphase. • 3:1 Methanol:Acetic Acid: fixes metaphase chromosomes for staining. Visualizing Metaphase Chromosomes (Banding) • Giemsa-, reverse- or centromere-stained metaphase chromosomes G-Bands R-Bands C-Bands Karyotype • International System for Human Cytogenetic Nomenclature (ISCN) – 46, XX – normal female – 46, XY – normal male • G-banded chromosomes are identified by band pattern. Normal Female Karyotype (46, XX) (G Banding) Types of Chromosomal Aberrations Numerical Abnormalities Structural Abnormalities Aneuploidy Aneuploidy occurs when one of the chromosomes is present in an abnormal number of copies. Trisomy and monosomy are two forms of aneuploidy. Chromosome Number Abnormality Aneuploidy (48, XXXX) Chromosome Number Abnormality Trisomy 21 (47, XX, +21) Down Syndrome is Caused by Trisomy for Chromosome 21 Aneuploidy is remarkably common, causing termination of at least 25% of human conceptions. Aneuploidy is also a driving force in cancer progression (virtually all cancer cells are aneuploid). Chromosome Non-Disjunction in Meiosis Causes Aneuploidy The Frequency of Chromosome Non-Disjunction And Down Syndrome Rises Sharply with Maternal Age Chromosome Number Abnormality Trisomy 13 (47, XX, +13) Trisomy 18 (47, XY,+18) Sex Chromosome Aneuploid Conditions are Common Klinefelter syndrome Polyploidy Polyploidy occurs when all the chromosomes are present in three or more copies. -
Dr. Fern Tsien, Dept. of Genetics, LSUHSC, NO, LA Down Syndrome
COMMON TYPES OF CHROMOSOME ABNORMALITIES Dr. Fern Tsien, Dept. of Genetics, LSUHSC, NO, LA A. Trisomy: instead of having the normal two copies of each chromosome, an individual has three of a particular chromosome. Which chromosome is trisomic determines the type and severity of the disorder. Down syndrome or Trisomy 21, is the most common trisomy, occurring in 1 per 800 births (about 3,400) a year in the United States. It is one of the most common genetic birth defects. According to the National Down Syndrome Society, there are more than 400,000 individuals with Down syndrome in the United States. Patients with Down syndrome have three copies of their 21 chromosomes instead of the normal two. The major clinical features of Down syndrome patients include low muscle tone, small stature, an upward slant to the eyes, a single deep crease across the center of the palm, mental retardation, and physical abnormalities, including heart and intestinal defects, and increased risk of leukemia. Every person with Down syndrome is a unique individual and may possess these characteristics to different degrees. Down syndrome patients Karyotype of a male patient with trisomy 21 What are the causes of Down syndrome? • 95% of all Down syndrome patients have a trisomy due to nondisjunction before fertilization • 1-2% have a mosaic karyotype due to nondisjunction after fertilization • 3-4% are due to a translocation 1. Nondisjunction refers to the failure of chromosomes to separate during cell division in the formation of the egg, sperm, or the fetus, causing an abnormal number of chromosomes. As a result, the baby may have an extra chromosome (trisomy). -
The Epidemiology of Sex Chromosome Abnormalities
Received: 12 March 2020 Revised: 11 May 2020 Accepted: 11 May 2020 DOI: 10.1002/ajmg.c.31805 RESEARCH REVIEW The epidemiology of sex chromosome abnormalities Agnethe Berglund1,2,3 | Kirstine Stochholm3 | Claus Højbjerg Gravholt2,3 1Department of Clinical Genetics, Aarhus University Hospital, Aarhus, Denmark Abstract 2Department of Molecular Medicine, Aarhus Sex chromosome abnormalities (SCAs) are characterized by gain or loss of entire sex University Hospital, Aarhus, Denmark chromosomes or parts of sex chromosomes with the best-known syndromes being 3Department of Endocrinology and Internal Medicine, Aarhus University Hospital, Aarhus, Turner syndrome, Klinefelter syndrome, 47,XXX syndrome, and 47,XYY syndrome. Denmark Since these syndromes were first described more than 60 years ago, several papers Correspondence have reported on diseases and health related problems, neurocognitive deficits, and Agnethe Berglund, Department of Clinical social challenges among affected persons. However, the generally increased comor- Genetics, Aarhus University Hospital, Aarhus, Denmark. bidity burden with specific comorbidity patterns within and across syndromes as well Email: [email protected] as early death of affected persons was not recognized until the last couple of Funding information decades, where population-based epidemiological studies were undertaken. More- Familien Hede Nielsens Fond; Novo Nordisk over, these epidemiological studies provided knowledge of an association between Fonden, Grant/Award Numbers: NNF13OC0003234, NNF15OC0016474 SCAs and a negatively reduced socioeconomic status in terms of education, income, retirement, cohabitation with a partner and parenthood. This review is on the aspects of epidemiology in Turner, Klinefelter, 47,XXX and 47,XYY syndrome. KEYWORDS 47,XXX syndrome, 47,XYY syndrome, epidemiology, Klinefelter syndrome, Turner syndrome 1 | INTRODUCTION 100 participants, and many with much fewer participants. -
Maternal Age, History of Miscarriage, and Embryonic/Fetal Size Are Associated with Cytogenetic Results of Spontaneous Early Miscarriages
Journal of Assisted Reproduction and Genetics (2019) 36:749–757 https://doi.org/10.1007/s10815-019-01415-y GENETICS Maternal age, history of miscarriage, and embryonic/fetal size are associated with cytogenetic results of spontaneous early miscarriages Nobuaki Ozawa1 & Kohei Ogawa1 & Aiko Sasaki1 & Mari Mitsui1 & Seiji Wada1 & Haruhiko Sago1 Received: 1 October 2018 /Accepted: 28 January 2019 /Published online: 9 February 2019 # Springer Science+Business Media, LLC, part of Springer Nature 2019 Abstract Purpose To clarify the associations of the maternal age, history of miscarriage, and embryonic/fetal size at miscarriage with the frequencies and profiles of cytogenetic abnormalities detected in spontaneous early miscarriages. Methods Miscarriages before 12 weeks of gestation, whose karyotypes were evaluated by G-banding between May 1, 2005, and May 31, 2017, were included in this study. The relationships between their karyotypes and clinical findings were assessed using trend or chi-square/Fisher’s exact tests and multivariate logistic analyses. Results Three hundred of 364 miscarriage specimens (82.4%) had abnormal karyotypes. An older maternal age was significantly associated with the frequency of abnormal karyotype (ptrend < 0.001), particularly autosomal non-viable and viable trisomies (ptrend 0.001 and 0.025, respectively). Women with ≥ 2 previous miscarriages had a significantly lower possibility of miscarriages with abnormal karyotype than women with < 2 previous miscarriages (adjusted odds ratio [aOR], 0.48; 95% confidence interval [95% CI], 0.27–0.85). Although viable trisomy was observed more frequently in proportion to the increase in embryonic/fetal size at miscarriage (ptrend < 0.001), non-viable trisomy was observed more frequently in miscarriages with an embryonic/fetal size < 10 mm (aOR, 2.41; 95% CI, 1.27–4.58), but less frequently in miscarriages with an embryonic/fetal size ≥ 20 mm (aOR, 0.01; 95% CI, 0.00–0.07) than in anembryonic miscarriages. -
Genetic and Expression Analysis of HER-2 and EGFR Genes in Salivary Duct Carcinoma: Empirical and Therapeutic Significance
Published OnlineFirst April 14, 2010; DOI: 10.1158/1078-0432.CCR-09-0238 Clinical Human Cancer Biology Cancer Research Genetic and Expression Analysis of HER-2 and EGFR Genes in Salivary Duct Carcinoma: Empirical and Therapeutic Significance Michelle D. Williams1, Dianna B. Roberts2, Merrill S. Kies3, Li Mao3, Randal S. Weber2, and Adel K. El-Naggar1,2 Abstract Purpose: Salivary duct carcinoma overexpresses epidermal growth factor receptor (EGFR) and HER-2, although the underlying mechanisms remain undefined. Because of the potential utilization of these markers as treatment targets, we evaluated protein and gene status by several techniques to determine complementary value. Experimental Design: A tissue microarray of 66 salivary duct carcinomas was used for immunohis- tochemical analysis of HER-2 and EGFR expression (semiquantitatively evaluated into a three-tiered system), and fluorescence in situ hybridization for gene copy number, and chromosomes 7 and 17 ploidy status. Sequencing of exons 18, 19, and 21 of the EGFR gene for mutations was carried out. Result: For EGFR, 46 (69.7%) of the 66 tumors showed some form of EGFR expression (17 at 3+, 17 at 2+, 12 at 1+) but none gene amplification. Five (9.4%) of 53 tumors showed mutations in exon 18 (n = 3) and exon 19 (n = 2). Polysomy of chromosome 7 (average >2.5 copies/cell) was detected in 15 (25.0%) of 60 tumors (6 at 3+, 5 at 2+, 2 at 1+, 2 at 0+ expression) and correlated with poor 3-year survival (P = 0.015). For HER-2, 17 (25.8%) of 66 tumors expressed HER-2 (10 at 3+, 3 at 2+, 4 at 1+). -
Chromosomal Abnormalities Worksheet Answer Key
Chromosomal Abnormalities Worksheet Answer Key Smitten or unpurposed, Jodie never exudate any conjoiner! Jeremiah bifurcated her examinees unchangeably, she buss it bedward. Emery tip haughtily. If a gene usually appear shortly after the chromosomal abnormalities worksheet answer key concepts, or structure of being used the foundation for the two different MEIOSIS and Gametogenesis TASK CARDS with licence Key. You dispatch wish to depart the differences between pedigree analysis and gene sequencing and have students think about when open use each method. There first many inherited disorders in the efficacy population. The abnormality found in individuals, abnormalities can happen after reading and significant amounts of. An abnormal number abnormalities worksheet answer key concepts as they answered each case western philosophy has also will prevent students worksheets is. Ne if intake of chromosomes Questions 1 What is the purpose with a conducting a karyotype anal 2 What causes a dark countryside on a chromosome veomans. Possessing three copies of four particular chromosome instead bend the normal two copies. In research institute of abnormalities worksheet answer key distinguishing feature of any other healthcare professional. After students complete the discussion, of DNA and RNA. Answers to cut out a normal humans with giemsa dye that is also many adolescents and answers i, discontinuous boundaries between malignancy and! We have vision issues often cannot see if a chromosome abnormality showing an individual is an advantage? 142 Human Genetic Disorders Worksheet Answers. A simple to understand how by Chromosome 2 years ago 7 minutes 3 seconds 3734 views What crime a chromosome abnormality disorder anomaly. Pak 6 study guide answerspdf Parkway Schools. -
The Cytogenetics of Hematologic Neoplasms 1 5
The Cytogenetics of Hematologic Neoplasms 1 5 Aurelia Meloni-Ehrig that errors during cell division were the basis for neoplastic Introduction growth was most likely the determining factor that inspired early researchers to take a better look at the genetics of the The knowledge that cancer is a malignant form of uncon- cell itself. Thus, the need to have cell preparations good trolled growth has existed for over a century. Several biologi- enough to be able to understand the mechanism of cell cal, chemical, and physical agents have been implicated in division became of critical importance. cancer causation. However, the mechanisms responsible for About 50 years after Boveri’s chromosome theory, the this uninhibited proliferation, following the initial insult(s), fi rst manuscripts on the chromosome makeup in normal are still object of intense investigation. human cells and in genetic disorders started to appear, fol- The fi rst documented studies of cancer were performed lowed by those describing chromosome changes in neoplas- over a century ago on domestic animals. At that time, the tic cells. A milestone of this investigation occurred in 1960 lack of both theoretical and technological knowledge with the publication of the fi rst article by Nowell and impaired the formulations of conclusions about cancer, other Hungerford on the association of chronic myelogenous leu- than the visible presence of new growth, thus the term neo- kemia with a small size chromosome, known today as the plasm (from the Greek neo = new and plasma = growth). In Philadelphia (Ph) chromosome, to honor the city where it the early 1900s, the fundamental role of chromosomes in was discovered (see also Chap. -
Trisomy 16 and Tracheo-Oesophageal Fistula
An Obstetrics and Gynecology Case Report HJO International Journal Trisomy 16 and Tracheo-oesophageal fistula Bompoula Maria- Sotiria1, Besharat Alexandros2, Pampanos Andreas3, Theodora Mariana2, Daskalakis George2, Pappa Kalliopi2 1National and Kapodistrian University of Athens, School of Medicine, Greece 21st Department of Obstetrics and Gynecology, Alexandra Hospital, National and Kapodistrian University of Athens, School of Medicine, Greece Correspondence Bompoula Maria- Sotiria E - mail: [email protected] Abstract We report a case of a 40-year-old woman, diagnosed Caesarean section was performed due to fetal distress in the first trimester screening with confined placen- at the 32nd gestational week. The newborn present- tal mosaicism. The result of chorionic villus sampling ed with respiratory distress. Finally, the newborn was was trisomy 16 and sequent amniocentesis revealed a diagnosed with a trachea-oesophageal fistula (TOF). normal male karyotype (46XY). Further examinations during pregnancy showed intrauterine growth restric- Keywords: τracheo-oesophageal fistula (TOF); intrau- tion in the absence of apparent anatomic anomalies. terine growth restriction (IUGR); trisomy 16 - racheo-oesophageal fistula (TOF) is a severe- tinct condition and the extra chromosome 16 is T congenital anomaly of unknown etiology. Sev present only in the placental tissues and not in the eral chromosomal anomalies have been asso fetus. In the uniparental disomy of chromosome ciated with TOF, but until today none of these has- 16 (UPD) the placental trisomy is complicated by been identified as a single etiological factor. - fetal chromosomes that appear to be normal but Trisomy 16 is the most common cause of first-tri both copies originate from one of the two parents.