The Birth of Virology
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Plant Viruses
Western Plant Diagnostic Network1 First Detector News A Quarterly Pest Update for WPDN First Detectors Spring 2015 edition, volume 8, number 2 In this Issue Page 1: Editor’s Note Dear First Detectors, Pages 2 – 3: Intro to Plant Plant viruses cause many important plant diseases and are Viruses responsible for huge losses in crop production and quality in Page 4: Virus nomenclature all parts of the world. Plant viruses can spread very quickly because many are vectored by insects such as aphids and Page 5 – Most Serious World Plant Viruses & Symptoms whitefly. They are a major pest of crop production as well as major pests of home gardens. By mid-summer many fields, Pages 6 – 7: Plant Virus vineyards, orchards, and gardens will see the effects of plant Vectors viruses. The focus of this edition is the origin, discovery, taxonomy, vectors, and the effects of virus infection in Pages 7 - 10: Grapevine plants. There is also a feature article on grapevine viruses. Viruses And, as usual, there are some pest updates from the West. Page 10: Pest Alerts On June 16 – 18, the WPDN is sponsoring the second Invasive Snail and Slug workshop at UC Davis. The workshop Contact us at the WPDN Regional will be recorded and will be posted on the WPDN and NPDN Center at UC Davis: home pages. Have a great summer and here’s hoping for Phone: 530 754 2255 rain! Email: [email protected] Web: https://wpdn.org Please find the NPDN family of newsletters at: Editor: Richard W. Hoenisch @Copyright Regents of the Newsletters University of California All Rights Reserved Western Plant Diagnostic Network News Plant Viruses 2 Ag, Manitoba Photo courtesy Photo Food, and Rural Initiatives and Food, of APS Photo by Giovanni Martelli, U of byBari Giovanni Photo Grapevine Fanleaf Virus Peanut leaf with Squash Mosaic Virus tomato spotted wilt virus Viruses are infectious pathogens that are too small to be seen with a light microscope, but despite their small size they can cause chaos. -
Virus Goes Viral: an Educational Kit for Virology Classes
Souza et al. Virology Journal (2020) 17:13 https://doi.org/10.1186/s12985-020-1291-9 RESEARCH Open Access Virus goes viral: an educational kit for virology classes Gabriel Augusto Pires de Souza1†, Victória Fulgêncio Queiroz1†, Maurício Teixeira Lima1†, Erik Vinicius de Sousa Reis1, Luiz Felipe Leomil Coelho2 and Jônatas Santos Abrahão1* Abstract Background: Viruses are the most numerous entities on Earth and have also been central to many episodes in the history of humankind. As the study of viruses progresses further and further, there are several limitations in transferring this knowledge to undergraduate and high school students. This deficiency is due to the difficulty in designing hands-on lessons that allow students to better absorb content, given limited financial resources and facilities, as well as the difficulty of exploiting viral particles, due to their small dimensions. The development of tools for teaching virology is important to encourage educators to expand on the covered topics and connect them to recent findings. Discoveries, such as giant DNA viruses, have provided an opportunity to explore aspects of viral particles in ways never seen before. Coupling these novel findings with techniques already explored by classical virology, including visualization of cytopathic effects on permissive cells, may represent a new way for teaching virology. This work aimed to develop a slide microscope kit that explores giant virus particles and some aspects of animal virus interaction with cell lines, with the goal of providing an innovative approach to virology teaching. Methods: Slides were produced by staining, with crystal violet, purified giant viruses and BSC-40 and Vero cells infected with viruses of the genera Orthopoxvirus, Flavivirus, and Alphavirus. -
Home Based Internship Certificate
HOME BASED INTERNSHIP CERTIFICATE This is to certify that Dhanush R, Reg. No. AME 19012 of B.E - Marine Engineering, AMET University, Chennai has undergone with a Home Based Internship, titled “Influenza Virus” from 1st April 2020 to 28th April 2020 during the academic year 2019-2020 and has successfully completed his internship programme. Faculty In-charge Principal – DGS Courses INTERNSHIP AT HOME A Report On Internship In DEPARTMENT OF MARINE ENGINEERING By Name : Dhanush R Registration Number : AME19012 Year : 1ST Year Batch : BE(ME)-19 Group : 1 1 Influenza Virus SARS-CoV-2, a member of the family Coronaviridae A virus is a sub microscopic infectious agent that replicates only inside the living cells of an organism. Viruses can infect all types of life forms, from animals and plants to microorganisms, including bacteria and archaea. Since Dmitri Ivanovsky's 1892 article describing a non-bacterial pathogen infecting tobacco plants, and the discovery of the tobacco mosaic virus by Martinus Beijerinck in 1898, more than 6,000 virus species have been described in detail, of the millions of types of viruses in the environment. Viruses are found in almost every ecosystem on Earth and are the most numerous type of biological entity. The study of viruses is known as virology, a subspeciality of microbiology. When infected, a host cell is forced to rapidly produce thousands of identical copies of the original virus. When not inside an infected cell or in the process of infecting a cell, viruses exist in the form of independent particles, or virions, consisting of: (i) the genetic material, i.e. -
Lecture 7 Introduction to Viruses Introduction
Lecture 7 Introduction to Viruses Introduction Virus, parasite with a noncellular structure composed mainly of nucleic acid within a protein coat. Most viruses are too small (100–2,000 Angstrom units) to be seen with the light microscope and thus must be studied by electron microscopes. In one stage of their life cycle, in which they are free and infectious, virus particles do not carry out the functions of living cells, such as respiration and growth; in the other stage, however, viruses enter living plant, animal, or bacterial cells and make use of the host cell's chemical energy and its protein- and nucleic acid–synthesizing ability to replicate themselves. Over 5,000 species of viruses have been discovered. Discovery of Viruses In 1884 the French microbiologist Charles Chamberland invented a filter, known today as the Chamberland filter or Chamberland–Pasteur filter that has pores smaller than bacteria. Thus he could pass a solution containing bacteria through the filter and completely remove them from the solution. In the early 1890s the Russian biologist Dmitri Ivanovsky used this filter to study what became known as the tobacco mosaic virus. His experiments showed that extracts from the crushed leaves of infected tobacco plants remain infectious after filtration. At the same time several other scientists proved that, although these agents (later called viruses) were different from bacteria, they could still cause disease, and they were about one hundredth the size of bacteria. In 1899 the Dutch microbiologist Martinus Beijerinck observed that the agent multiplied only in dividing cells. Having failed to demonstrate its particulate nature he called it a "contagium vivum fluidum", a "soluble living germ". -
View Policy Viral Infectivity
Virology Journal BioMed Central Editorial Open Access Virology on the Internet: the time is right for a new journal Robert F Garry* Address: Department of Microbiology and Immunology Tulane University School of Medicine New Orleans, Louisiana USA Email: Robert F Garry* - [email protected] * Corresponding author Published: 26 August 2004 Received: 31 July 2004 Accepted: 26 August 2004 Virology Journal 2004, 1:1 doi:10.1186/1743-422X-1-1 This article is available from: http://www.virologyj.com/content/1/1/1 © 2004 Garry; licensee BioMed Central Ltd. This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Virology Journal is an exclusively on-line, Open Access journal devoted to the presentation of high- quality original research concerning human, animal, plant, insect bacterial, and fungal viruses. Virology Journal will establish a strategic alternative to the traditional virology communication process. The outbreaks of SARS coronavirus and West Nile virus Open Access (WNV), and the troubling increase of poliovirus infec- Virology Journal's Open Access policy changes the way in tions in Africa, are but a few recent examples of the unpre- which articles in virology can be published [1]. First, all dictable and ever-changing topography of the field of articles are freely and universally accessible online as soon virology. Previously unknown viruses, such as the SARS as they are published, so an author's work can be read by coronavirus, may emerge at anytime, anywhere in the anyone at no cost. -
Viral Gene Therapy Lecture 25 Biology 3310/4310 Virology Spring 2017
Viral gene therapy Lecture 25 Biology 3310/4310 Virology Spring 2017 “Trust science, not scientists” --DICKSON DESPOMMIER Virus vectors • Gene therapy: deliver a gene to patients who lack the gene or carry defective versions • To deliver antigens (viral vaccines) • Viral oncotherapy • Research uses Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University A Poliovirus C (+) mRNA I AnAOH3’ Infection Cultured cells (+) Viral RNA Vaccinia virus T7 Viral DNA 5' Transfection 3' encoding T7 Plasmids expressing N, P, L, RNA polymerase and (+) strand RNA cDNA synthesis and cloning Infection Transfection Transfection Transfection Poliovirus 5' Progeny DNA 3' In vitro RNA (+) strand RNA synthesis transcript Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University ©Principles of Virology, ASM Press B Viral protein PB1 Infectious virus Translation D (+) mRNA c AnAOH3’ (+) mRNA I AnAOH3’ RNA polymerase II (splicing) Plasmid Plasmid Pol II Viral DNA Pol I T7 Viral DNA RNA polymerase I (–) vRNAs 8-plasmid 10-plasmid transfection transfection Infectious virus Infectious virus ScEYEnce Studios Principles of Virology, 4e Volume 01 Fig. 03.12 10-28-14 Adenovirus vectors Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University ©Principles of Virology, ASM Press Adenovirus vectors • Efficiently infect post-mitotic cells • Fast (48 h) onset of gene expression • Episomal, minimal risk of insertion mutagenesis • Up to 37 kb capacity • Pure, concentrated preps routine • >50 human serotypes, animal serotypes • Drawback: immunity Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University Adenovirus vectors • First generation vectors: E1, E3 deleted • E1: encodes T antigens (Rb, p53) • E3: not essential, immunomodulatory proteins Virology Lectures 2017 • Prof. Vincent Racaniello • Columbia University http://edoc.ub.uni-muenchen.de/13826/ Adenovirus vectors • Second generation vectors: E1, E3 deleted, plus deletions in E2 or E4 • More space for transgene Virology Lectures 2017 • Prof. -
Historical Overview 1
Historical Overview 1 Contents 1.1 Since When Have We Known of Viruses? ................................................ 3 1.2 What Technical Advances Have Contributed to the Development of Modern Virology? .......................................................................... 4 1.2.1 Animal Experiments Have Provided Important Insights into the Pathogenesis of Viral Diseases .................................................... 5 1.2.2 Cell Culture Systems Are an Indispensable Basis for Virus Research ........... 6 1.2.3 Modern Molecular Biology Is also a Child of Virus Research ................... 8 1.3 What Is the Importance of the Henle–Koch Postulates? .................................. 9 1.4 What Is the Interrelationship Between Virus Research, Cancer Research, Neurobiology and Immunology? .......................................................... 10 1.4.1 Viruses are Able to Transform Cells and Cause Cancer .......................... 10 1.4.2 Central Nervous System Disorders Emerge as Late Sequelae of Slow Viral Infections ........................................................................... 12 1.4.3 Interferons Stimulate the Immune Defence Against Viral Infections . .. .. .. .. 12 1.5 What Strategies Underlie the Development of Antiviral Chemotherapeutic Agents? . 13 1.6 What Challenges Must Modern Virology Face in the Future? .. ... ... ... ... ... ... ... ... 13 Further Reading ................................................................................... 14 1.1 Since When Have We Known of Viruses? “Poisons” were -
Archives of Virology
Archives of Virology Binomial nomenclature for virus species: a long view --Manuscript Draft-- Manuscript Number: ARVI-D-20-00436R2 Full Title: Binomial nomenclature for virus species: a long view Article Type: Virology Division News: Virus Taxonomy/Nomenclature Keywords: virus taxonomy; species definition; virus definition; virions; metagenomes; Latinized binomials Corresponding Author: Adrian John Gibbs, Ph.D. ex-Australian National University Canberra, ACT AUSTRALIA Corresponding Author Secondary Information: Corresponding Author's Institution: ex-Australian National University Corresponding Author's Secondary Institution: First Author: Adrian John Gibbs, Ph.D. First Author Secondary Information: Order of Authors: Adrian John Gibbs, Ph.D. Order of Authors Secondary Information: Funding Information: Abstract: On several occasions over the past century it has been proposed that Latinized (Linnaean) binomial names (LBs) should be used for the formal names of virus species, and the opinions expressed in the early debates are still valid. The use of LBs would be sensible for the current Taxonomy if confined to the names of the specific and generic taxa of viruses of which some basic biological properties are known (e.g. ecology, hosts and virions); there is no advantage filling the literature with formal names for partly described viruses or virus-like gene sequences. The ICTV should support the time-honoured convention that LBs are only used with biological (phylogenetic) classifications. Recent changes have left the ICTV Taxonomy and -
Module1: General Concepts
NPTEL – Biotechnology – General Virology Module1: General Concepts Lecture 1: Virus history The history of virology goes back to the late 19th century, when German anatomist Dr Jacob Henle (discoverer of Henle’s loop) hypothesized the existence of infectious agent that were too small to be observed under light microscope. This idea fails to be accepted by the present scientific community in the absence of any direct evidence. At the same time three landmark discoveries came together that formed the founding stone of what we call today as medical science. The first discovery came from Louis Pasture (1822-1895) who gave the spontaneous generation theory from his famous swan-neck flask experiment. The second discovery came from Robert Koch (1843-1910), a student of Jacob Henle, who showed for first time that the anthrax and tuberculosis is caused by a bacillus, and finally Joseph Lister (1827-1912) gave the concept of sterility during the surgery and isolation of new organism. The history of viruses and the field of virology are broadly divided into three phases, namely discovery, early and modern. The discovery phase (1886-1913) In 1879, Adolf Mayer, a German scientist first observed the dark and light spot on infected leaves of tobacco plant and named it tobacco mosaic disease. Although he failed to describe the disease, he showed the infectious nature of the disease after inoculating the juice extract of diseased plant to a healthy one. The next step was taken by a Russian scientist Dimitri Ivanovsky in 1890, who demonstrated that sap of the leaves infected with tobacco mosaic disease retains its infectious property even after its filtration through a Chamberland filter. -
View of "Bird Flu: a Virus of Our Own Hatching" by Michael Greger Chengfeng Qin* and Ede Qin
Virology Journal BioMed Central Book report Open Access Review of "Bird Flu: A Virus of Our Own Hatching" by Michael Greger Chengfeng Qin* and Ede Qin Address: State Key Laboratory of Pathogen and Biosecurity, Institute of Microbiology and Epidemiology, Beijing 100071, China Email: Chengfeng Qin* - [email protected]; Ede Qin - [email protected] * Corresponding author Published: 30 April 2007 Received: 2 February 2007 Accepted: 30 April 2007 Virology Journal 2007, 4:38 doi:10.1186/1743-422X-4-38 This article is available from: http://www.virologyj.com/content/4/1/38 © 2007 Qin and Qin; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Book details behavior can cause new plagues, changes in human Michael Greger: Bird Flu: A Virus of Our Own Hatching USA: behavior may prevent them in the future". Lantern Books; 2006:465. ISBN 1590560981 Review Yes, we can change. In the last sections of the book, Greger Due to my responsibility as member of advisory commit- carefully details how to protect ourselves in the very likely tee on pandemic influenza, I regard any new publication event that a bird flu pandemic begins to sweep the world on bird flu with special enthusiasm. A book that recently and how to prevent future pandemics. Dr. Greger's simple caught my eye was one by Michael Greger titled Bird Flu: and practical suggestions are invaluable for both nation A Virus of Our Own Hatching. -
The Origin and Evolution of Viruses
Mini Review Agri Res & Tech: Open Access J Volume 21 Issue 5 - June 2019 Copyright © All rights are reserved by Luka AO Awata DOI: 10.19080/ARTOAJ.2019.21.556181 The Central Question in Virology: The Origin and Evolution of Viruses Luka AO Awata1*, Beatrice E Ifie2, Pangirayi Tongoona2, Eric Danquah2, Samuel Offei2 and Phillip W Marchelo D’ragga3 1Directorate of Research, Ministry of Agriculture and Food Security, South Sudan 2College of Basic and Applied Sciences, University of Ghana, Ghana 3Department of Agricultural Sciences, University of Juba, South Sudan Submission: June 01, 2019; Published: June 12, 2019 *Corresponding author: Luka AO Awata, Directorate of Research, Ministry of Agriculture and Food Security, Ministries Complex, Parliament Road, P.O. Box 33, Juba, South Sudan Abstract Viruses are major threats to both animals and plants worldwide. A virus exists as a set of one or more nucleic acid molecules normally encased in a protective coat of protein or lipoprotein. It is able to replicate itself within suitable host cells, causing diseases to plants and animals. While the three domains of life trace their linages back to a single protein (the Last Universal Cellular Ancestor (LUCA), information on parental molecule from which all viruses descended is inadequate. Structural analyses of capsid proteins suggest that there is no universal viral protein and different types of virions are mostly formed independently. As a result, it is impossible to neither include viruses in the Tree of Life of LUCA nor to draw a universal tree of viruses analogous to the tree of life. Although the concepts on the origin and evolution of viruses are well documented, the structure and biological activities of viruses are paradoxical. -
Virology Journal Biomed Central
Virology Journal BioMed Central Short report Open Access Genomic presence of recombinant porcine endogenous retrovirus in transmitting miniature swine Stanley I Martin, Robert Wilkinson and Jay A Fishman* Address: Infectious Disease Division, Massachusetts General Hospital, Boston, MA 02114, USA Email: Stanley I Martin - [email protected]; Robert Wilkinson - [email protected]; Jay A Fishman* - [email protected] * Corresponding author Published: 02 November 2006 Received: 22 June 2006 Accepted: 02 November 2006 Virology Journal 2006, 3:91 doi:10.1186/1743-422X-3-91 This article is available from: http://www.virologyj.com/content/3/1/91 © 2006 Martin et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract The replication of porcine endogenous retrovirus (PERV) in human cell lines suggests a potential infectious risk in xenotransplantation. PERV isolated from human cells following cocultivation with porcine peripheral blood mononuclear cells is a recombinant of PERV-A and PERV-C. We describe two different recombinant PERV-AC sequences in the cellular DNA of some transmitting miniature swine. This is the first evidence of PERV-AC recombinant virus in porcine genomic DNA that may have resulted from autoinfection following exogenous viral recombination. Infectious risk in xenotransplantation will be defined by the activity of PERV loci in vivo. Background been detected previously in the genomes of transmitting Xenotransplantation using inbred miniature swine is a swine [5,10].