Porcine strain JL94 inner VP6 (VP6) mRNA, complete cds GenBank: AY538664.1 FASTA Graphics

Go to:

LOCUS AY538664 1356 bp mRNA linear VRL 25-OCT-2004

DEFINITION Porcine rotavirus strain JL94 inner capsid protein VP6 (VP6) mRNA,

complete cds.

ACCESSION AY538664

VERSION AY538664.1

KEYWORDS .

SOURCE Porcine rotavirus

ORGANISM Porcine rotavirus

Viruses; ; ; Duplornaviricota;

Resentoviricetes; Reovirales; ; Sedoreovirinae;

Rotavirus.

REFERENCE 1 (bases 1 to 1356)

AUTHORS Chen,S., Li,Y. and Song,Y.

TITLE Porcine rotavirus JL94 inner capsid protein VP6 mRNA

JOURNAL Unpublished

REFERENCE 2 (bases 1 to 1356)

AUTHORS Chen,S., Li,Y., Shi,D. and Song,Y.

TITLE Direct Submission

JOURNAL Submitted (02-FEB-2004) Molecular Virology & Microbiology,

Veterinary Medicine College, Northeast Agricultural University,

Mucai Street, Harbin, Heilongjiang 150030, ChinaFEATURES Location/Qualifiers source 1..1356

/organism="Porcine rotavirus"

/mol_type="mRNA"

/strain="JL94"

/db_xref="taxon:10913" gene 1..1356

/gene="VP6" CDS 24..1217

/gene="VP6"

/codon_start=1 /product="inner capsid protein VP6"

/protein_id="AAS46764.1"

/="MEVLYSLSKTLKDARDKIVEGTLYSNISDLIQQFNQMIVTMNGN

DFQTGGIGNLPIRNWNFDFGLLGTTLLNIDANYVENARTTIEYFIDFIDNVCMDEMAR

ESQRNGIAPQSEALRKLSGIKFKGINFDNSSDYIENWNLQNRRQRTGFVFHKPNILPY

SASFTLNRSQPAHDNLMGTMWINAGSEIQVAGFDYSCAFNAPANIQQFEHVVPLRRAL

TTATITLLPDAERFSFPRVINSADGATTWYFNPVIIRPSNVEVEFLLNGQIINTYQAR

FGTIIARNFDTIRLSFQLVRPPNMTPAVANLFPQAPPFIFHATVGLTLRIESAVCESV

LADASETLLANVTAVRQEYAIPVGPVFPPGMNWTELITNYSPSREDNLQRVFTVASIR

SMLIK"ORIGIN

1 ggcttttaaa cgaagtcttc gacatggagg ttctgtactc attgtcaaaa accttgaaag

61 atgctagaga taaaattgtt gaaggtacat tatactcaaa tataagtgat ttaattcaac

121 aattcaatca aatgatagtt accatgaatg gaaatgattt tcaaacggga ggaataggaa

181 atttgccaat cagaaactgg aattttgatt tcggattact tggcactact ttacttaata

241 tagatgcaaa ttatgttgaa aatgctagaa ctaccattga atatttcatt gattttatag

301 ataatgtgtg tatggatgaa atggctagag agtcgcaacg aaacggaata gctccacaat

361 ctgaagcact gagaaagctg tcaggtatta agtttaaggg aattaatttt gacaattcat

421 ctgattacat tgagaattgg aatttacaaa atagacgaca gcgtactgga ttcgtgttcc

481 ataagccaaa tatacttcca tactcagcat cattcacttt gaatagatca cagccggcac

541 atgataattt aatggggact atgtggatta acgctggatc agaaattcag gtggctggat

601 ttgattattc gtgtgctttt aatgcaccgg caaatattca gcagtttgaa catgtcgtgc

661 cattaagacg tgcacttacg acagctacaa ttactttgct accagatgct gagaggttca

721 gtttcccaag agtgattaat tcagctgatg gcgctactac atggtacttc aatccagtta

781 tcataagacc aagtaatgtt gaagttgaat ttttgttgaa tgggcaaata attaatacgt

841 accaagcgcg atttggaacc atcatagcta gaaattttga tactattcgg ttatcatttc

901 aattagtacg accaccgaat atgacaccag cagttgcaaa cctatttccg caagcaccac

961 catttatatt tcatgctaca gttggactca cactacgaat tgaatctgca gtttgtgaat

1021 ctgtgcttgc ggacgcttcc gaaactttat tggcaaatgt gactgcagtt cgtcaagagt

1081 atgctatacc ggtagggcca gtgttcccac caggtatgaa ttggacagaa ttgattacca

1141 attattcacc ttcaagagaa gataacttgc aacgtgtttt cacagtagct tccattagaa

1201 gcatgttgat taagtgagga ctaggctaac tacctggtat ccgatcttaa tcaacatgta

1261 gctatgtcaa gtcaatcaga ctctgcaagt aagggtatga tttcatactc gctacgtaga

1321 gtaactgttt gaatgacata gtgagaggat gtgacc //