Applied Mathematics 205 Unit V: Eigenvalue Problems
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A Distributed and Parallel Asynchronous Unite and Conquer Method to Solve Large Scale Non-Hermitian Linear Systems Xinzhe Wu, Serge Petiton
A Distributed and Parallel Asynchronous Unite and Conquer Method to Solve Large Scale Non-Hermitian Linear Systems Xinzhe Wu, Serge Petiton To cite this version: Xinzhe Wu, Serge Petiton. A Distributed and Parallel Asynchronous Unite and Conquer Method to Solve Large Scale Non-Hermitian Linear Systems. HPC Asia 2018 - International Conference on High Performance Computing in Asia-Pacific Region, Jan 2018, Tokyo, Japan. 10.1145/3149457.3154481. hal-01677110 HAL Id: hal-01677110 https://hal.archives-ouvertes.fr/hal-01677110 Submitted on 8 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A Distributed and Parallel Asynchronous Unite and Conquer Method to Solve Large Scale Non-Hermitian Linear Systems Xinzhe WU Serge G. Petiton Maison de la Simulation, USR 3441 Maison de la Simulation, USR 3441 CRIStAL, UMR CNRS 9189 CRIStAL, UMR CNRS 9189 Université de Lille 1, Sciences et Technologies Université de Lille 1, Sciences et Technologies F-91191, Gif-sur-Yvette, France F-91191, Gif-sur-Yvette, France [email protected] [email protected] ABSTRACT the iteration number. These methods are already well implemented Parallel Krylov Subspace Methods are commonly used for solv- in parallel to profit from the great number of computation cores ing large-scale sparse linear systems. -
Efficient Algorithms for High-Dimensional Eigenvalue
Efficient Algorithms for High-dimensional Eigenvalue Problems by Zhe Wang Department of Mathematics Duke University Date: Approved: Jianfeng Lu, Advisor Xiuyuan Cheng Jonathon Mattingly Weitao Yang Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Mathematics in the Graduate School of Duke University 2020 ABSTRACT Efficient Algorithms for High-dimensional Eigenvalue Problems by Zhe Wang Department of Mathematics Duke University Date: Approved: Jianfeng Lu, Advisor Xiuyuan Cheng Jonathon Mattingly Weitao Yang An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Mathematics in the Graduate School of Duke University 2020 Copyright © 2020 by Zhe Wang All rights reserved Abstract The eigenvalue problem is a traditional mathematical problem and has a wide appli- cations. Although there are many algorithms and theories, it is still challenging to solve the leading eigenvalue problem of extreme high dimension. Full configuration interaction (FCI) problem in quantum chemistry is such a problem. This thesis tries to understand some existing algorithms of FCI problem and propose new efficient algorithms for the high-dimensional eigenvalue problem. In more details, we first es- tablish a general framework of inexact power iteration and establish the convergence theorem of full configuration interaction quantum Monte Carlo (FCIQMC) and fast randomized iteration (FRI). Second, we reformulate the leading eigenvalue problem as an optimization problem, then compare the show the convergence of several coor- dinate descent methods (CDM) to solve the leading eigenvalue problem. Third, we propose a new efficient algorithm named Coordinate descent FCI (CDFCI) based on coordinate descent methods to solve the FCI problem, which produces some state-of- the-art results. -
Implicitly Restarted Arnoldi/Lanczos Methods for Large Scale Eigenvalue Calculations
NASA Contractor Report 198342 /" ICASE Report No. 96-40 J ICA IMPLICITLY RESTARTED ARNOLDI/LANCZOS METHODS FOR LARGE SCALE EIGENVALUE CALCULATIONS Danny C. Sorensen NASA Contract No. NASI-19480 May 1996 Institute for Computer Applications in Science and Engineering NASA Langley Research Center Hampton, VA 23681-0001 Operated by Universities Space Research Association National Aeronautics and Space Administration Langley Research Center Hampton, Virginia 23681-0001 IMPLICITLY RESTARTED ARNOLDI/LANCZOS METHODS FOR LARGE SCALE EIGENVALUE CALCULATIONS Danny C. Sorensen 1 Department of Computational and Applied Mathematics Rice University Houston, TX 77251 sorensen@rice, edu ABSTRACT Eigenvalues and eigenfunctions of linear operators are important to many areas of ap- plied mathematics. The ability to approximate these quantities numerically is becoming increasingly important in a wide variety of applications. This increasing demand has fu- eled interest in the development of new methods and software for the numerical solution of large-scale algebraic eigenvalue problems. In turn, the existence of these new methods and software, along with the dramatically increased computational capabilities now avail- able, has enabled the solution of problems that would not even have been posed five or ten years ago. Until very recently, software for large-scale nonsymmetric problems was virtually non-existent. Fortunately, the situation is improving rapidly. The purpose of this article is to provide an overview of the numerical solution of large- scale algebraic eigenvalue problems. The focus will be on a class of methods called Krylov subspace projection methods. The well-known Lanczos method is the premier member of this class. The Arnoldi method generalizes the Lanczos method to the nonsymmetric case. -
Krylov Subspaces
Lab 1 Krylov Subspaces Lab Objective: Discuss simple Krylov Subspace Methods for finding eigenvalues and show some interesting applications. One of the biggest difficulties in computational linear algebra is the amount of memory needed to store a large matrix and the amount of time needed to read its entries. Methods using Krylov subspaces avoid this difficulty by studying how a matrix acts on vectors, making it unnecessary in many cases to create the matrix itself. More specifically, we can construct a Krylov subspace just by knowing how a linear transformation acts on vectors, and with these subspaces we can closely approximate eigenvalues of the transformation and solutions to associated linear systems. The Arnoldi iteration is an algorithm for finding an orthonormal basis of a Krylov subspace. Its outputs can also be used to approximate the eigenvalues of the original matrix. The Arnoldi Iteration The order-N Krylov subspace of A generated by x is 2 n−1 Kn(A; x) = spanfx;Ax;A x;:::;A xg: If the vectors fx;Ax;A2x;:::;An−1xg are linearly independent, then they form a basis for Kn(A; x). However, this basis is usually far from orthogonal, and hence computations using this basis will likely be ill-conditioned. One way to find an orthonormal basis for Kn(A; x) would be to use the modi- fied Gram-Schmidt algorithm from Lab TODO on the set fx;Ax;A2x;:::;An−1xg. More efficiently, the Arnold iteration integrates the creation of fx;Ax;A2x;:::;An−1xg with the modified Gram-Schmidt algorithm, returning an orthonormal basis for Kn(A; x). -
Iterative Methods for Linear System
Iterative methods for Linear System JASS 2009 Student: Rishi Patil Advisor: Prof. Thomas Huckle Outline ●Basics: Matrices and their properties Eigenvalues, Condition Number ●Iterative Methods Direct and Indirect Methods ●Krylov Subspace Methods Ritz Galerkin: CG Minimum Residual Approach : GMRES/MINRES Petrov-Gaelerkin Method: BiCG, QMR, CGS 1st April JASS 2009 2 Basics ●Linear system of equations Ax = b ●A Hermitian matrix (or self-adjoint matrix ) is a square matrix with complex entries which is equal to its own conjugate transpose, 3 2 + i that is, the element in the ith row and jth column is equal to the A = complex conjugate of the element in the jth row and ith column, for 2 − i 1 all indices i and j • Symmetric if a ij = a ji • Positive definite if, for every nonzero vector x XTAx > 0 • Quadratic form: 1 f( x) === xTAx −−− bTx +++ c 2 ∂ f( x) • Gradient of Quadratic form: ∂x 1 1 1 f' (x) = ⋮ = ATx + Ax − b ∂ 2 2 f( x) ∂xn 1st April JASS 2009 3 Various quadratic forms Positive-definite Negative-definite matrix matrix Singular Indefinite positive-indefinite matrix matrix 1st April JASS 2009 4 Various quadratic forms 1st April JASS 2009 5 Eigenvalues and Eigenvectors For any n×n matrix A, a scalar λ and a nonzero vector v that satisfy the equation Av =λv are said to be the eigenvalue and the eigenvector of A. ●If the matrix is symmetric , then the following properties hold: (a) the eigenvalues of A are real (b) eigenvectors associated with distinct eigenvalues are orthogonal ●The matrix A is positive definite (or positive semidefinite) if and only if all eigenvalues of A are positive (or nonnegative). -
Implicitly Restarted Arnoldi/Lanczos Methods for Large Scale Eigenvalue Calculations
https://ntrs.nasa.gov/search.jsp?R=19960048075 2020-06-16T03:31:45+00:00Z NASA Contractor Report 198342 /" ICASE Report No. 96-40 J ICA IMPLICITLY RESTARTED ARNOLDI/LANCZOS METHODS FOR LARGE SCALE EIGENVALUE CALCULATIONS Danny C. Sorensen NASA Contract No. NASI-19480 May 1996 Institute for Computer Applications in Science and Engineering NASA Langley Research Center Hampton, VA 23681-0001 Operated by Universities Space Research Association National Aeronautics and Space Administration Langley Research Center Hampton, Virginia 23681-0001 IMPLICITLY RESTARTED ARNOLDI/LANCZOS METHODS FOR LARGE SCALE EIGENVALUE CALCULATIONS Danny C. Sorensen 1 Department of Computational and Applied Mathematics Rice University Houston, TX 77251 sorensen@rice, edu ABSTRACT Eigenvalues and eigenfunctions of linear operators are important to many areas of ap- plied mathematics. The ability to approximate these quantities numerically is becoming increasingly important in a wide variety of applications. This increasing demand has fu- eled interest in the development of new methods and software for the numerical solution of large-scale algebraic eigenvalue problems. In turn, the existence of these new methods and software, along with the dramatically increased computational capabilities now avail- able, has enabled the solution of problems that would not even have been posed five or ten years ago. Until very recently, software for large-scale nonsymmetric problems was virtually non-existent. Fortunately, the situation is improving rapidly. The purpose of this article is to provide an overview of the numerical solution of large- scale algebraic eigenvalue problems. The focus will be on a class of methods called Krylov subspace projection methods. The well-known Lanczos method is the premier member of this class. -
Accelerated Stochastic Power Iteration
Accelerated Stochastic Power Iteration CHRISTOPHER DE SAy BRYAN HEy IOANNIS MITLIAGKASy CHRISTOPHER RE´ y PENG XU∗ yDepartment of Computer Science, Stanford University ∗Institute for Computational and Mathematical Engineering, Stanford University cdesa,bryanhe,[email protected], [email protected], [email protected] July 11, 2017 Abstract Principal component analysis (PCA) is one of the most powerful tools in machine learning. The simplest method for PCA, the power iteration, requires O(1=∆) full-data passes to recover the principal component of a matrix withp eigen-gap ∆. Lanczos, a significantly more complex method, achieves an accelerated rate of O(1= ∆) passes. Modern applications, however, motivate methods that only ingest a subset of available data, known as the stochastic setting. In the online stochastic setting, simple 2 2 algorithms like Oja’s iteration achieve the optimal sample complexity O(σ =p∆ ). Unfortunately, they are fully sequential, and also require O(σ2=∆2) iterations, far from the O(1= ∆) rate of Lanczos. We propose a simple variant of the power iteration with an added momentum term, that achieves both the optimal sample and iteration complexity.p In the full-pass setting, standard analysis shows that momentum achieves the accelerated rate, O(1= ∆). We demonstrate empirically that naively applying momentum to a stochastic method, does not result in acceleration. We perform a novel, tight variance analysis that reveals the “breaking-point variance” beyond which this acceleration does not occur. By combining this insight with modern variance reduction techniques, we construct stochastic PCAp algorithms, for the online and offline setting, that achieve an accelerated iteration complexity O(1= ∆). -
The Influence of Orthogonality on the Arnoldi Method
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Linear Algebra and its Applications 309 (2000) 307±323 www.elsevier.com/locate/laa The in¯uence of orthogonality on the Arnoldi method T. Braconnier *, P. Langlois, J.C. Rioual IREMIA, Universite de la Reunion, DeÂpartement de Mathematiques et Informatique, BP 7151, 15 Avenue Rene Cassin, 97715 Saint-Denis Messag Cedex 9, La Reunion, France Received 1 February 1999; accepted 22 May 1999 Submitted by J.L. Barlow Abstract Many algorithms for solving eigenproblems need to compute an orthonormal basis. The computation is commonly performed using a QR factorization computed using the classical or the modi®ed Gram±Schmidt algorithm, the Householder algorithm, the Givens algorithm or the Gram±Schmidt algorithm with iterative reorthogonalization. For the eigenproblem, although textbooks warn users about the possible instability of eigensolvers due to loss of orthonormality, few theoretical results exist. In this paper we prove that the loss of orthonormality of the computed basis can aect the reliability of the computed eigenpair when we use the Arnoldi method. We also show that the stopping criterion based on the backward error and the value computed using the Arnoldi method can dier because of the loss of orthonormality of the computed basis of the Krylov subspace. We also give a bound which quanti®es this dierence in terms of the loss of orthonormality. Ó 2000 Elsevier Science Inc. All rights reserved. Keywords: QR factorization; Backward error; Eigenvalues; Arnoldi method 1. Introduction The aim of the most commonly used eigensolvers is to approximate a basis of an invariant subspace associated with some eigenvalues. -
Numerical Linear Algebra Program Lecture 4 Basic Methods For
Program Lecture 4 Numerical Linear Algebra • Basic methods for eigenproblems. Basic iterative methods • Power method • Shift-and-invert Power method • QR algorithm • Basic iterative methods for linear systems • Richardson’s method • Jacobi, Gauss-Seidel and SOR • Iterative refinement Gerard Sleijpen and Martin van Gijzen • Steepest decent and the Minimal residual method October 5, 2016 1 October 5, 2016 2 National Master Course National Master Course Delft University of Technology Basic methods for eigenproblems The Power method The eigenvalue problem The Power method is the classical method to compute in modulus largest eigenvalue and associated eigenvector of a Av = λv matrix. can not be solved in a direct way for problems of order > 4, since Multiplying with a matrix amplifies strongest the eigendirection the eigenvalues are the roots of the characteristic equation corresponding to the in modulus largest eigenvalues. det(A − λI) = 0. Successively multiplying and scaling (to avoid overflow or underflow) yields a vector in which the direction of the largest Today we will discuss two iterative methods for solving the eigenvector becomes more and more dominant. eigenproblem. October 5, 2016 3 October 5, 2016 4 National Master Course National Master Course Algorithm Convergence (1) The Power method for an n × n matrix A. Let the n eigenvalues λi with eigenvectors vi, Avi = λivi, be n ordered such that |λ1| ≥ |λ2|≥ . ≥ |λn|. u0 ∈ C is given • Assume the eigenvectors v ,..., vn form a basis. for k = 1, 2, ... 1 • Assume |λ1| > |λ2|. uk = Auk−1 Each arbitrary starting vector u0 can be written as: uk = uk/kukk2 e(k) ∗ λ = uk−1uk u0 = α1v1 + α2v2 + .. -
Power Method and Krylov Subspaces
Power method and Krylov subspaces Introduction When calculating an eigenvalue of a matrix A using the power method, one starts with an initial random vector b and then computes iteratively the sequence Ab, A2b,...,An−1b normalising and storing the result in b on each iteration. The sequence converges to the eigenvector of the largest eigenvalue of A. The set of vectors 2 n−1 Kn = b, Ab, A b,...,A b , (1) where n < rank(A), is called the order-n Krylov matrix, and the subspace spanned by these vectors is called the order-n Krylov subspace. The vectors are not orthogonal but can be made so e.g. by Gram-Schmidt orthogonalisation. For the same reason that An−1b approximates the dominant eigenvector one can expect that the other orthogonalised vectors approximate the eigenvectors of the n largest eigenvalues. Krylov subspaces are the basis of several successful iterative methods in numerical linear algebra, in particular: Arnoldi and Lanczos methods for finding one (or a few) eigenvalues of a matrix; and GMRES (Generalised Minimum RESidual) method for solving systems of linear equations. These methods are particularly suitable for large sparse matrices as they avoid matrix-matrix opera- tions but rather multiply vectors by matrices and work with the resulting vectors and matrices in Krylov subspaces of modest sizes. Arnoldi iteration Arnoldi iteration is an algorithm where the order-n orthogonalised Krylov matrix Qn of a matrix A is built using stabilised Gram-Schmidt process: • start with a set Q = {q1} of one random normalised vector q1 • repeat for k =2 to n : – make a new vector qk = Aqk−1 † – orthogonalise qk to all vectors qi ∈ Q storing qi qk → hi,k−1 – normalise qk storing qk → hk,k−1 – add qk to the set Q By construction the matrix Hn made of the elements hjk is an upper Hessenberg matrix, h1,1 h1,2 h1,3 ··· h1,n h2,1 h2,2 h2,3 ··· h2,n 0 h3,2 h3,3 ··· h3,n Hn = , (2) . -
Finding Eigenvalues: Arnoldi Iteration and the QR Algorithm
Finding Eigenvalues: Arnoldi Iteration and the QR Algorithm Will Wheeler Algorithms Interest Group Jul 13, 2016 Outline Finding the largest eigenvalue I Largest eigenvalue power method I So much work for one eigenvector. What about others? I More eigenvectors orthogonalize Krylov matrix I build orthogonal list Arnoldi iteration Solving the eigenvalue problem I Eigenvalues diagonal of triangular matrix I Triangular matrix QR algorithm I QR algorithm QR decomposition I Better QR decomposition Hessenberg matrix I Hessenberg matrix Arnoldi algorithm Power Method How do we find the largest eigenvalue of an m × m matrix A? I Start with a vector b and make a power sequence: b; Ab; A2b;::: I Higher eigenvalues dominate: n n n n A (v1 + v2) = λ1v1 + λ2v2 ≈ λ1v1 Vector sequence (normalized) converged? I Yes: Eigenvector I No: Iterate some more Krylov Matrix Power method throws away information along the way. I Put the sequence into a matrix K = [b; Ab; A2b;:::; An−1b] (1) = [xn; xn−1; xn−2;:::; x1] (2) I Gram-Schmidt approximates first n eigenvectors v1 = x1 (3) x2 · x1 v2 = x2 − x1 (4) x1 · x1 x3 · x1 x3 · x2 v3 = x3 − x1 − x2 (5) x1 · x1 x2 · x2 ::: (6) I Why not orthogonalize as we build the list? Arnoldi Iteration I Start with a normalized vector q1 xk = Aqk−1 (next power) (7) k−1 X yk = xk − (qj · xk ) qj (Gram-Schmidt) (8) j=1 qk = yk = jyk j (normalize) (9) I Orthonormal vectors fq1;:::; qng span Krylov subspace n−1 (Kn = spanfq1; Aq1;:::; A q1g) I These are not the eigenvectors of A, but make a similarity y (unitary) transformation Hn = QnAQn Arnoldi Iteration I Start with a normalized vector q1 xk = Aqk−1 (next power) (10) k−1 X yk = xk − (qj · xk ) qj (Gram-Schmidt) (11) j=1 qk = yk =jyk j (normalize) (12) I Orthonormal vectors fq1;:::; qng span Krylov subspace n−1 (Kn = spanfq1; Aq1;:::; A q1g) I These are not the eigenvectors of A, but make a similarity y (unitary) transformation Hn = QnAQn Arnoldi Iteration - Construct Hn We can construct the matrix Hn along the way. -
Arxiv:1105.1185V1 [Math.NA] 5 May 2011 Ento 2.2
ITERATIVE METHODS FOR COMPUTING EIGENVALUES AND EIGENVECTORS MAYSUM PANJU Abstract. We examine some numerical iterative methods for computing the eigenvalues and eigenvectors of real matrices. The five methods examined here range from the simple power iteration method to the more complicated QR iteration method. The derivations, procedure, and advantages of each method are briefly discussed. 1. Introduction Eigenvalues and eigenvectors play an important part in the applications of linear algebra. The naive method of finding the eigenvalues of a matrix involves finding the roots of the characteristic polynomial of the matrix. In industrial sized matrices, however, this method is not feasible, and the eigenvalues must be obtained by other means. Fortunately, there exist several other techniques for finding eigenvalues and eigenvectors of a matrix, some of which fall under the realm of iterative methods. These methods work by repeatedly refining approximations to the eigenvectors or eigenvalues, and can be terminated whenever the approximations reach a suitable degree of accuracy. Iterative methods form the basis of much of modern day eigenvalue computation. In this paper, we outline five such iterative methods, and summarize their derivations, procedures, and advantages. The methods to be examined are the power iteration method, the shifted inverse iteration method, the Rayleigh quotient method, the simultaneous iteration method, and the QR method. This paper is meant to be a survey over existing algorithms for the eigenvalue computation problem. Section 2 of this paper provides a brief review of some of the linear algebra background required to understand the concepts that are discussed. In section 3, the iterative methods are each presented, in order of complexity, and are studied in brief detail.