Descriptions of Two Cymothoid Isopods (Crustacea, Isopoda, Cymothoida) from Korean Waters
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DIRECTEUR DE LA PUBLICATION / PUBLICATION DIRECTOR : Bruno David Président du Muséum national d’Histoire naturelle RÉDACTRICE EN CHEF / EDITOR-IN-CHIEF : Laure Desutter-Grandcolas ASSISTANTE DE RÉDACTION / ASSISTANT EDITOR : Anne Mabille ([email protected]) MISE EN PAGE / PAGE LAYOUT : Anne Mabille COMITÉ SCIENTIFIQUE / SCIENTIFIC BOARD : James Carpenter (AMNH, New York, États-Unis) Maria Marta Cigliano (Museo de La Plata, La Plata, Argentine) Henrik Enghoff (NHMD, Copenhague, Danemark) Rafael Marquez (CSIC, Madrid, Espagne) Peter Ng (University of Singapore) Jean-Yves Rasplus (INRA, Montferrier-sur-Lez, France) Jean-François Silvain (IRD, Gif-sur-Yvette, France) Wanda M. Weiner (Polish Academy of Sciences, Cracovie, Pologne) John Wenzel (The Ohio State University, Columbus, États-Unis) COUVERTURE / COVER : Akrophryxus milvus n. gen., n. sp., holotype female, MNHN-IU-2014-20314, attached to Ethusa machaera Castro, 2005, macropod images. Zoosystema est indexé dans / Zoosystema is indexed in: – Science Citation Index Expanded (SciSearch®) – ISI Alerting Services® – Current Contents® / Agriculture, Biology, and Environmental Sciences® – Scopus® Zoosystema est distribué en version électronique par / Zoosystema is distributed electronically by: – BioOne® (http://www.bioone.org) Les articles ainsi que les nouveautés nomenclaturales publiés dans Zoosystema sont référencés par / Articles and nomenclatural novelties published in Zoosystema are referenced by: – ZooBank® (http://zoobank.org) Zoosystema est une revue en flux continu publiée par les Publications scientifiques du Muséum, Paris / Zoosystema is a fast track journal published by the Museum Science Press, Paris Les Publications scientifiques du Muséum publient aussi / The Museum Science Press also publish: Adansonia, Geodiversitas, Anthropozoologica, European Journal of Taxonomy, Naturae, Cryptogamie sous-sections Algologie, Bryologie, Mycologie. Diffusion – Publications scientifiques Muséum national d’Histoire naturelle CP 41 – 57 rue Cuvier F-75231 Paris cedex 05 (France) Tél. -
Basal Position of Two New Complete Mitochondrial Genomes of Parasitic
Hua et al. Parasites & Vectors (2018) 11:628 https://doi.org/10.1186/s13071-018-3162-4 RESEARCH Open Access Basal position of two new complete mitochondrial genomes of parasitic Cymothoida (Crustacea: Isopoda) challenges the monophyly of the suborder and phylogeny of the entire order Cong J. Hua1,2, Wen X. Li1, Dong Zhang1,2, Hong Zou1, Ming Li1, Ivan Jakovlić3, Shan G. Wu1 and Gui T. Wang1,2* Abstract Background: Isopoda is a highly diverse order of crustaceans with more than 10,300 species, many of which are parasitic. Taxonomy and phylogeny within the order, especially those of the suborder Cymothoida Wägele, 1989, are still debated. Mitochondrial (mt) genomes are a useful tool for phylogenetic studies, but their availability for isopods is very limited. To explore these phylogenetic controversies on the mt genomic level and study the mt genome evolution in Isopoda, we sequenced mt genomes of two parasitic isopods, Tachaea chinensis Thielemann, 1910 and Ichthyoxenos japonensis Richardson, 1913, belonging to the suborder Cymothoida, and conducted comparative and phylogenetic mt genomic analyses across Isopoda. Results: The complete mt genomes of T. chinensis and I. japonensis were 14,616 bp and 15,440 bp in size, respectively, with the A+T content higher than in other isopods (72.7 and 72.8%, respectively). Both genomes code for 13 protein-coding genes, 21 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs), and possess a control region (CR). Both are missing a gene from the complete tRNA set: T. chinensis lacks trnS1 and I. japonensis lacks trnI. Both possess unique gene orders among isopods. -
California “Epicaridean” Isopods Superfamilies Bopyroidea and Cryptoniscoidea (Crustacea, Isopoda, Cymothoida)
California “Epicaridean” Isopods Superfamilies Bopyroidea and Cryptoniscoidea (Crustacea, Isopoda, Cymothoida) by Timothy D. Stebbins Presented to SCAMIT 13 February 2012 City of San Diego Marine Biology Laboratory Environmental Monitoring & Technical Services Division • Public Utilities Department (Revised 1/18/12) California Epicarideans Suborder Cymothoida Subfamily Phyllodurinae Superfamily Bopyroidea Phyllodurus abdominalis Stimpson, 1857 Subfamily Athelginae Family Bopyridae * Anathelges hyphalus (Markham, 1974) Subfamily Pseudioninae Subfamily Hemiarthrinae Aporobopyrus muguensis Shiino, 1964 Hemiarthrus abdominalis (Krøyer, 1840) Aporobopyrus oviformis Shiino, 1934 Unidentified species † Asymmetrione ambodistorta Markham, 1985 Family Dajidae Discomorphus magnifoliatus Markham, 2008 Holophryxus alaskensis Richardson, 1905 Goleathopseudione bilobatus Román-Contreras, 2008 Family Entoniscidae Munidion pleuroncodis Markham, 1975 Portunion conformis Muscatine, 1956 Orthione griffenis Markham, 2004 Superfamily Cryptoniscoidea Pseudione galacanthae Hansen, 1897 Family Cabiropidae Pseudione giardi Calman, 1898 Cabirops montereyensis Sassaman, 1985 Subfamily Bopyrinae Family Cryptoniscidae Bathygyge grandis Hansen, 1897 Faba setosa Nierstrasz & Brender à Brandis, 1930 Bopyrella calmani (Richardson, 1905) Family Hemioniscidae Probopyria sp. A Stebbins, 2011 Hemioniscus balani Buchholz, 1866 Schizobopyrina striata (Nierstrasz & Brender à Brandis, 1929) Subfamily Argeiinae † Unidentified species of Hemiarthrinae infesting Argeia pugettensis -
California Bopyridae T
California Bopyridae T. D. Stebbins, January 2012 (Crustacea, Isopoda, Cymothoida, Bopyroidea) Subfamily Species Host(s) Range Notes Pseudioninae Aporobopyrus muguensis Porcelain crabs Pachycheles Bodega Bay, northern California Shiino, 1964 holosericus, P. pubescens, and P. to central west Baja California; rudis in California 10-12 m Pseudioninae Aporobopyrus oviformis Porcelain crab Pachycheles Point Mugu, California and Shiino, 1934 pubescens in California Japan; 10-12 m Pseudioninae Asymmetrione ambodistorta Hermit crab Isocheles pilosus Southern California Markham, 1985 Pseudioninae Discomorphus magnifoliatus Porcelain crab Petrolisthes Pacific Grove, Monterey County, Markham, 2008 cinctipes California Pseudioninae Goleathopseudione bilobatus Galatheid crab Munidopsis Central California; 4100 m Because the stem name “Ione” Román-Contreras, 2008 antonii is feminine, so should be “Goleathopseudione.” Thus, the correct species name should be “bilobata” (J. Markham, pers. comm.) Pseudioninae Munidion pleuroncodis Galatheid pelagic red crab Central California to central Markham, 1975 Pleuroncodes planipes Mexico Pseudioninae Orthione griffenis Markham, Mud shrimp Upogebia British Columbia to southern 2004 pugettensis and Upogebia California (Introduced species macginitieorum from Asia: China, Japan) Pseudioninae Pseudione galacanthae Galatheid crabs Galacantha British Columbia to Gulf of Need to confirm: Record from Hansen, 1897 diomediae and Munida California R. Brusca “List of California quadrispina Species” Page 1 California Bopyrid Isopods / T. D. Stebbins (January 2012) Subfamily Species Host(s) Range Notes Pseudioninae Pseudione giardi Calman, 1898 Hermit crabs of the genus Bering Sea to San Juan Islands, Added to SCAMIT Ed. 6 list Pagurus; plus 1 possible record Washington; possibly extended (SCAMIT, 2011) based on trawl record off PV (D. Cadien, pers. infesting the lithodid into California (see Notes) comm.); However, P. -
Fossil Calibrations for the Arthropod Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/044859; this version posted June 10, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. FOSSIL CALIBRATIONS FOR THE ARTHROPOD TREE OF LIFE AUTHORS Joanna M. Wolfe1*, Allison C. Daley2,3, David A. Legg3, Gregory D. Edgecombe4 1 Department of Earth, Atmospheric & Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 2 Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK 3 Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PZ, UK 4 Department of Earth Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK *Corresponding author: [email protected] ABSTRACT Fossil age data and molecular sequences are increasingly combined to establish a timescale for the Tree of Life. Arthropods, as the most species-rich and morphologically disparate animal phylum, have received substantial attention, particularly with regard to questions such as the timing of habitat shifts (e.g. terrestrialisation), genome evolution (e.g. gene family duplication and functional evolution), origins of novel characters and behaviours (e.g. wings and flight, venom, silk), biogeography, rate of diversification (e.g. Cambrian explosion, insect coevolution with angiosperms, evolution of crab body plans), and the evolution of arthropod microbiomes. We present herein a series of rigorously vetted calibration fossils for arthropod evolutionary history, taking into account recently published guidelines for best practice in fossil calibration. -
(Isopoda, Cymothoida, Anthuroidea) from the East Coast of Peninsular Malaysia with an Identification Key to the Species of Pendanthura
Bull Mar Sci. 92(2):229–242. 2016 new taxa paper http://dx.doi.org/10.5343/bms.2015.1056 Two new species of Pendanthura (Isopoda, Cymothoida, Anthuroidea) from the east coast of Peninsular Malaysia with an identification key to the species of Pendanthura 1 Marine Ecosystem Research Melvin Chew 1 Centre (EKOMAR), Faculty of Azman bin Abdul Rahim 1 * Science & Technology, Universiti 2 Kebangsaan Malaysia, 43600, Nurul Yuziana Mohd Yusof Selangor, Malaysia. 2 School of Biosciences & Biotechnology, Faculty of ABSTRACT.—Two new Pendanthura species are described Science & Technology, Universiti and illustrated. Pendanthura tinggiensis sp. nov. was collected Kebangsaan Malaysia, 43600, from coral rubble on the coral reefs of Pulau Tinggi, Johor, Selangor, Malaysia. Malaysia, and Pendanthura tiomanensis sp. nov. from similar * Corresponding author email: habitats at Pulau Tioman, Pahang, Malaysia. The former <[email protected]>. species is recognizable by a blunt tooth on the propodal palm of pereopod 1, while the latter species is characterized by a Date Submitted: 14 September, 2015. pointed tooth with a transparent margin on the propodal Date Accepted: 19 January, 2016. palm of pereopod 1 and a significant large brown patch on Available Online: 26 February, 2016. cephalon dorsally. A new classification of anthuroids based on a cladistics analysis of family and generic relationship was presented by Poore (2001). Following that, the suborder Anthuridea Monod, 1922 was replaced by the superfamily Anthuroidea Leach, 1814 within the Cymothoida Wägele, 1989 (Brandt and Poore 2003). Both revisions are necessary to address the previous concerns raised by various authors regarding their taxonomic and evolutionary relationships. The species of Pendanthura Menzies and Glynn, 1968 are distinguishable from other species of Anthuridae by the prominent rostrum, uniarticulate article of max- illipedal palp, and uniarticulate mandibular palp (Poore 2001). -
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources http://www.dnr.sc.gov/marine/sertc/ Southeastern Regional Taxonomic Center Invertebrate Literature Library (updated 9 May 2012, 4056 entries) (1958-1959). Proceedings of the salt marsh conference held at the Marine Institute of the University of Georgia, Apollo Island, Georgia March 25-28, 1958. Salt Marsh Conference, The Marine Institute, University of Georgia, Sapelo Island, Georgia, Marine Institute of the University of Georgia. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Caprellidea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Gammaridea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1981). Stomatopods. FAO species identification sheets for fishery purposes. Eastern Central Atlantic; fishing areas 34,47 (in part).Canada Funds-in Trust. Ottawa, Department of Fisheries and Oceans Canada, by arrangement with the Food and Agriculture Organization of the United Nations, vols. 1-7. W. Fischer, G. Bianchi and W. B. Scott. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume II. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume III. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. -
A New Species of Eisothistos (Isopoda, Cymothoida) and First
Zoosyst. Evol. 94 (1) 2018, 73–81 | DOI 10.3897/zse.94.23000 museum für naturkunde A new species of Eisothistos (Isopoda, Cymothoida) and first molecular data on six species of Anthuroidea from the Peninsular Malaysia Melvin Chew1, Azman bin Abdul Rahim1, Nurul Yuziana binti Mohd Yusof2 1 Marine Ecosystem Research Centre (EKOMAR), Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), Bangi, Selangor, Malaysia 2 School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), Bangi, Selangor, Malaysia http://zoobank.org/9C28FEF8-BA69-4BCD-A91B-FA910956E2DD Corresponding author: Azman bin Abdul Rahim ([email protected]) Abstract Received 13 December 2017 A new species of expanathurid (Eisothistos tiomanensis sp. n.) is described and illustrated. Accepted 15 January 2018 It was collected from Pulau Tioman, Malaysia and can be distinguished by the unique Published 25 January 2018 bipartite shape of its uropodal exopod. Accalathura borradailei, Apanthura pariensis, A. stocki, Expanathura corallis and Mesanthura quadrata in the Malaysian waters are Academic editor: recorded for the first time. Additionally, six sequences of cytochrome c oxidase subunit I Michael Ohl (COI) genes are presented. These are the first molecular evidence of anthuroids from the waters of Malaysia. Key Words Isopoda Anthuroidea Expanathuridae Leptanthuridae Anthuridae Eisothistos tiomanensis Accalathura borradailei Apanthura pariensis Apanthura stocki Expanathura corallis Mesanthura quadrata Pendanthura tinggiensis Tinggianthura alba COI Introduction of family and generic relationships which resulted in the recognition of six families while the latter work replaced The Anthuroidea Leach, 1814 are a distinctive group of Anthuridea with the superfamily Anthuroidea within the mainly marine isopods (Poore 2009). -
Species Diversity Report
GEORGE WASHINGTON NATIONAL FOREST APPENDIX F – SPECIES DIVERSITY REPORT APPENDIX F – SPECIES DIVERSITY REPORT George Washington National Forest April 2011 Updated February 2013 FINAL ENVIRONMENTAL IMPACT STATEMENT F - i APPENDIX F – SPECIES DIVERSITY REPORT GEORGE WASHINGTON NATIONAL FOREST This page left intentionally blank F - ii FINAL ENVIRONMENTAL IMPACT STATEMENT GEORGE WASHINGTON NATIONAL FOREST APPENDIX F – SPECIES DIVERSITY REPORT TABLE OF CONTENTS 1.0 Introduction…………………………………………………………………………………………………….1 2.0 Species Diversity………………………………………………………………………………………………1 2.1 Ecosystem Context for Species……………...……………………………………………………..…………1 2.2 Identification and Screening of Species……………………………………………………….……………2 3.0 Threatened and Endangered Species …………………………………………………………………3 3.1 Threatened and Endangered Species List…………..…………………………………………..…………3 3.2 Threatened and Endangered Species Descriptions and Needed Plan Components ………4 3.2.1 Indiana Bat………………………………………………………………………………………………...………4 3.2.2 Virginia Big-Eared Bat……………………………………………………………………………………….15 3.2.3 Virginia Northern Flying Squirrel..………………………………………………. …….18 3.2.4 James Spinymussel ………………………………………………………………………………………….22 3.2.5 Madison Cave Isopod……………………………………………………………………………….………..26 3.2.6 Shale Barren Rock Cress……………………………………………………………………………..…..…28 3.2.7 Smooth Cone Flower……………………………………………………………………………………..…..32 3.2.8 Virginia Sneezeweed……………………………………………………….……………………..……….…33 3.2.9 Swamp Pink ……………………………………………………………….……………………….……………36 3.2.10 Northeastern Bulrush…………………………………………………………………………..………..….37 -
A Phylogenetic Analysis of the Isopoda with Some Classificatory Recommendations
A PHYLOGENETIC ANALYSIS OF THE ISOPODA WITH SOME CLASSIFICATORY RECOMMENDATIONS RICHARD C. BRUSCA AND GEORGE D.F. WILSON Brusca, R.C. and Wilson, G.D.F. 1991 09 01: A phylogenetic analysis of the Isopoda with some classificatory recommendations. Memoirs of the Queensland Museum 31: 143-204. Brisbane. ISSN 0079-8835. The phylogenetic relationships of the isopod crustacean suborders are assessed using cladistic methodology. The monophyly of the Flabellifera was tested by including all 15 component families separately in the analysis. Four other peracarid orders (Mysidacea, Amphipoda, Mictacea, and Tanaidacea) were used as multiple out-groups to root our phylogenetic estimates within the Isopoda. A broad range of possible characters for use in assessing isopod relationships is discussed and a final data (character) matrix was selected. This data matrix, comprising 29 taxa and 92 characters, was subjected to computer-assisted analysis using four different phylogenetic programs: HENNIG86, PAUP, PHYLIP, and MacClade. Phylogenetic hypotheses from the literature (particularly Wagele, 1989a) are discussed and compared with our own conclusions. The following hypotheses are suggested by our analysis. The Isopoda constitutes a monophyletic group. The Phreatoicidea is the earliest derived group of living isopods, followed by an Asellota-Microcerberidea line, and next the Oniscidea. Above the Onis- cidea is a large clade of 'long-tailed' isopod taxa (Valvifera, Anthuridea, Flabellifera, Epicaridea, Gnathiidea). The Microcerberidea is the sister group of the Asellota, but probably should not be included in the Asellota. The Oniscidea constitutes a monophyletic group. The monotypic taxon Calabozoidea is either a primitive oniscidean, or is a sister group of the Oniscidea (Calabozoa is not an asellotan). -
Global Diversity of Fish Parasitic Isopod Crustaceans of the Family
International Journal for Parasitology: Parasites and Wildlife xxx (2014) xxx–xxx Contents lists available at ScienceDirect International Journal for Parasitology: Parasites and Wildlife journal homepage: www.elsevier.com/locate/ijppaw Review Global diversity of fish parasitic isopod crustaceans of the family Cymothoidae ⇑ Nico J. Smit a, , Niel L. Bruce a,b, Kerry A. Hadfield a a Water Research Group (Ecology), Unit for Environmental Sciences and Management, North West University, Potchefstroom Campus, Private Bag X6001, Potchefstroom 2520, South Africa b Museum of Tropical Queensland, Queensland Museum and School of Marine and Tropical Biology, James Cook University, 70–102 Flinders Street, Townsville 4810, Australia article info abstract Article history: Of the 95 known families of Isopoda only a few are parasitic namely, Bopyridae, Cryptoniscidae, Received 7 February 2014 Cymothoidae, Dajidae, Entoniscidae, Gnathiidae and Tridentellidae. Representatives from the family Revised 19 March 2014 Cymothoidae are obligate parasites of both marine and freshwater fishes and there are currently 40 Accepted 20 March 2014 recognised cymothoid genera worldwide. These isopods are large (>6 mm) parasites, thus easy to observe Available online xxxx and collect, yet many aspects of their biodiversity and biology are still unknown. They are widely distributed around the world and occur in many different habitats, but mostly in shallow waters in Keywords: tropical or subtropical areas. A number of adaptations to an obligatory parasitic existence have been Isopoda observed, such as the body shape, which is influenced by the attachment site on the host. Cymothoids Biodiversity Parasites generally have a long, slender body tapering towards the ends and the efficient contour of the body offers Cymothoidae minimum resistance to the water flow and can withstand the forces of this particular habitat. -
Pilbara Stygofauna: Deep Groundwater of an Arid Landscape Contains Globally Significant Radiation of Biodiversity
Records of the Western Australian Museum, Supplement 78: 443–483 (2014). Pilbara stygofauna: deep groundwater of an arid landscape contains globally significant radiation of biodiversity S.A. Halse1,2, M.D. Scanlon1,2, J.S. Cocking1,2, H.J. Barron1,3, J.B. Richardson2,5 and S.M. Eberhard1,4 1 Department of Parks and Wildlife, PO Box 51, Wanneroo, Western Australia 6946, Australia; email: [email protected] 2 Bennelongia Environmental Consultants, PO Box 384, Wembley, Western Australia 6913, Australia. 3 CITIC Pacific Mining Management Pty Ltd, PO Box 2732, Perth, Western Australia 6000, Australia. 4 Subterranean Ecology Pty Ltd, 8/37 Cedric St, Stirling, Western Australia 6021, Australia. 5 VMC Consulting/Electronic Arts Canada, Burnaby, British Columbia V5G 4X1, Canada. Abstract – The Pilbara region was surveyed for stygofauna between 2002 and 2005 with the aims of setting nature conservation priorities in relation to stygofauna, improving the understanding of factors affecting invertebrate stygofauna distribution and sampling yields, and providing a framework for assessing stygofauna species and community significance in the environmental impact assessment process. Approximately 350 species of stygofauna were collected during the survey and extrapolation suggests that 500–550 actually occur in the Pilbara, although taxonomic resolution among some groups of stygofauna is poor and species richness is likely to have been substantially underestimated. More than 50 species were found in a single bore. Even though species richness was underestimated, it is clear that the Pilbara is a globally important region for stygofauna, supporting species densities greater than anywhere other than the Dinaric karst of Europe. This is in part because of a remarkable radiation of candonid ostracods in the Pilbara.