Larry Wall, Perl and the Technology and Culture of the Early Web
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T-Coffee Documentation Release Version 13.45.47.Aba98c5
T-Coffee Documentation Release Version_13.45.47.aba98c5 Cedric Notredame Aug 31, 2021 Contents 1 T-Coffee Installation 3 1.1 Installation................................................3 1.1.1 Unix/Linux Binaries......................................4 1.1.2 MacOS Binaries - Updated...................................4 1.1.3 Installation From Source/Binaries downloader (Mac OSX/Linux)...............4 1.2 Template based modes: PSI/TM-Coffee and Expresso.........................5 1.2.1 Why do I need BLAST with T-Coffee?.............................6 1.2.2 Using a BLAST local version on Unix.............................6 1.2.3 Using the EBI BLAST client..................................6 1.2.4 Using the NCBI BLAST client.................................7 1.2.5 Using another client.......................................7 1.3 Troubleshooting.............................................7 1.3.1 Third party packages......................................7 1.3.2 M-Coffee parameters......................................9 1.3.3 Structural modes (using PDB)................................. 10 1.3.4 R-Coffee associated packages................................. 10 2 Quick Start Regressive Algorithm 11 2.1 Introduction............................................... 11 2.2 Installation from source......................................... 12 2.3 Examples................................................. 12 2.3.1 Fast and accurate........................................ 12 2.3.2 Slower and more accurate.................................... 12 2.3.3 Very Fast........................................... -
Open Source Software Vs Proprietary Software Sakshi Singh, Madhvik Verma, Naveen Kumar N
International Journal of Scientific & Engineering Research Volume 8, Issue 12, December-2017 735 ISSN 2229-5518 Open Source Software Vs Proprietary Software Sakshi Singh, Madhvik Verma, Naveen Kumar N Abstract— Open Source software are the most revolutionizing concept that has been put forth in the Information Technology spectrum. This new release has raised quite a lot of brows, similar to when the Internet was launched. For a very long time, there has been a tiff going on between the Proprietary software and the open source software and how the open source software are taking over their ancestors. The technical experts often indulge in conversations as to which of the two software is better and why. People also get confused as to which type of software can be listed as Open source. In this paper we aim to emphasize that the open source development cycle has been there in the market for quite some time and has a huge user base now, thus giving it a strong hold in the software market. It has encouraged the use of new strategically placed actions which has in turn made a huge base for open source software systems. On the other hand, many experts also suggest that this is just momentary and it will pass over a period of time whereas the proprietary software are there to stay. This paper gives the understanding and recommendations for both the kind of software thus giving the user a proper understanding of which software is suitable for their use and thus they can make a better choice for their purpose. -
Perl Baseless Myths & Startling Realities
http://xkcd.com/224/ 1 Perl Baseless Myths & Startling Realities by Tim Bunce, February 2008 2 Parrot and Perl 6 portion incomplete due to lack of time (not lack of myths!) Realities - I'm positive about Perl Not negative about other languages - Pick any language well suited to the task - Good developers are always most important, whatever language is used 3 DISPEL myths UPDATE about perl Who am I? - Tim Bunce - Author of the Perl DBI module - Using Perl since 1991 - Involved in the development of Perl 5 - “Pumpkin” for 5.4.x maintenance releases - http://blog.timbunce.org 4 Perl 5.4.x 1997-1998 Living on the west coast of Ireland ~ Myths ~ 5 http://www.bleaklow.com/blog/2003/08/new_perl_6_book_announced.html ~ Myths ~ - Perl is dead - Perl is hard to read / test / maintain - Perl 6 is killing Perl 5 6 Another myth: Perl is slow: http://www.tbray.org/ongoing/When/200x/2007/10/30/WF-Results ~ Myths ~ - Perl is dead - Perl is hard to read / test / maintain - Perl 6 is killing Perl 5 7 Perl 5 - Perl 5 isn’t the new kid on the block - Perl is 21 years old - Perl 5 is 14 years old - A mature language with a mature culture 8 How many times Microsoft has changed developer technologies in the last 14 years... 9 10 You can guess where thatʼs leading... From “The State of the Onion 10” by Larry Wall, 2006 http://www.perl.com/pub/a/2006/09/21/onion.html?page=3 Buzz != Jobs - Perl5 hasn’t been generating buzz recently - It’s just getting on with the job - Lots of jobs - just not all in web development 11 Web developers tend to have a narrow focus. -
Coffeescript Accelerated Javascript Development.Pdf
Download from Wow! eBook <www.wowebook.com> What readers are saying about CoffeeScript: Accelerated JavaScript Development It’s hard to imagine a new web application today that doesn’t make heavy use of JavaScript, but if you’re used to something like Ruby, it feels like a significant step down to deal with JavaScript, more of a chore than a joy. Enter CoffeeScript: a pre-compiler that removes all the unnecessary verbosity of JavaScript and simply makes it a pleasure to write and read. Go, go, Coffee! This book is a great introduction to the world of CoffeeScript. ➤ David Heinemeier Hansson Creator, Rails Just like CoffeeScript itself, Trevor gets straight to the point and shows you the benefits of CoffeeScript and how to write concise, clear CoffeeScript code. ➤ Scott Leberknight Chief Architect, Near Infinity Though CoffeeScript is a new language, you can already find it almost everywhere. This book will show you just how powerful and fun CoffeeScript can be. ➤ Stan Angeloff Managing Director, PSP WebTech Bulgaria Download from Wow! eBook <www.wowebook.com> This book helps readers become better JavaScripters in the process of learning CoffeeScript. What’s more, it’s a blast to read, especially if you are new to Coffee- Script and ready to learn. ➤ Brendan Eich Creator, JavaScript CoffeeScript may turn out to be one of the great innovations in web application development; since I first discovered it, I’ve never had to write a line of pure JavaScript. I hope the readers of this wonderful book will be able to say the same. ➤ Dr. Nic Williams CEO/Founder, Mocra CoffeeScript: Accelerated JavaScript Development is an excellent guide to Coffee- Script from one of the community’s most esteemed members. -
Coffeescript Accelerated Javascript Development, Second Edition
Extracted from: CoffeeScript Accelerated JavaScript Development, Second Edition This PDF file contains pages extracted from CoffeeScript, published by the Prag- matic Bookshelf. For more information or to purchase a paperback or PDF copy, please visit http://www.pragprog.com. Note: This extract contains some colored text (particularly in code listing). This is available only in online versions of the books. The printed versions are black and white. Pagination might vary between the online and printed versions; the content is otherwise identical. Copyright © 2015 The Pragmatic Programmers, LLC. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form, or by any means, electronic, mechanical, photocopying, recording, or otherwise, without the prior consent of the publisher. The Pragmatic Bookshelf Dallas, Texas • Raleigh, North Carolina CoffeeScript Accelerated JavaScript Development, Second Edition Trevor Burnham The Pragmatic Bookshelf Dallas, Texas • Raleigh, North Carolina Many of the designations used by manufacturers and sellers to distinguish their products are claimed as trademarks. Where those designations appear in this book, and The Pragmatic Programmers, LLC was aware of a trademark claim, the designations have been printed in initial capital letters or in all capitals. The Pragmatic Starter Kit, The Pragmatic Programmer, Pragmatic Programming, Pragmatic Bookshelf, PragProg and the linking g device are trade- marks of The Pragmatic Programmers, LLC. Every precaution was taken in the preparation of this book. However, the publisher assumes no responsibility for errors or omissions, or for damages that may result from the use of information (including program listings) contained herein. Our Pragmatic courses, workshops, and other products can help you and your team create better software and have more fun. -
Arxiv:1812.09167V1 [Quant-Ph] 21 Dec 2018 It with the Tex Typesetting System Being a Prime Example
Open source software in quantum computing Mark Fingerhutha,1, 2 Tomáš Babej,1 and Peter Wittek3, 4, 5, 6 1ProteinQure Inc., Toronto, Canada 2University of KwaZulu-Natal, Durban, South Africa 3Rotman School of Management, University of Toronto, Toronto, Canada 4Creative Destruction Lab, Toronto, Canada 5Vector Institute for Artificial Intelligence, Toronto, Canada 6Perimeter Institute for Theoretical Physics, Waterloo, Canada Open source software is becoming crucial in the design and testing of quantum algorithms. Many of the tools are backed by major commercial vendors with the goal to make it easier to develop quantum software: this mirrors how well-funded open machine learning frameworks enabled the development of complex models and their execution on equally complex hardware. We review a wide range of open source software for quantum computing, covering all stages of the quantum toolchain from quantum hardware interfaces through quantum compilers to implementations of quantum algorithms, as well as all quantum computing paradigms, including quantum annealing, and discrete and continuous-variable gate-model quantum computing. The evaluation of each project covers characteristics such as documentation, licence, the choice of programming language, compliance with norms of software engineering, and the culture of the project. We find that while the diversity of projects is mesmerizing, only a few attract external developers and even many commercially backed frameworks have shortcomings in software engineering. Based on these observations, we highlight the best practices that could foster a more active community around quantum computing software that welcomes newcomers to the field, but also ensures high-quality, well-documented code. INTRODUCTION Source code has been developed and shared among enthusiasts since the early 1950s. -
Open Source Licensing Information for Cisco IOS Release 15.4(1)T
Open Source Used In Cisco IOS Release 15.4(1)T Cisco Systems, Inc. www.cisco.com Cisco has more than 200 offices worldwide. Addresses, phone numbers, and fax numbers are listed on the Cisco website at www.cisco.com/go/offices. Text Part Number: 78EE117C99-15140077 Open Source Used In Cisco IOS Release 15.4(1)T 1 This document contains licenses and notices for open source software used in this product. With respect to the free/open source software listed in this document, if you have any questions or wish to receive a copy of any source code to which you may be entitled under the applicable free/open source license(s) (such as the GNU Lesser/General Public License), please contact us at [email protected]. In your requests please include the following reference number 78EE117C99-15140077 Contents 1.1 bzip2 1.0.0 1.1.1 Available under license 1.2 C/C++ BEEP Core 0.2.00 1.2.1 Available under license 1.3 cd9660 8.18 1.3.1 Available under license 1.4 cthrift-without-GPL-code 0.3.14 1.4.1 Available under license 1.5 CUDD: CU Decision Diagram Package v2.4.1 1.5.1 Available under license 1.6 Cyrus SASL 2.1.0 1.6.1 Notifications 1.6.2 Available under license 1.7 DTOA unknown 1.7.1 Available under license 1.8 editline 1.11 1.8.1 Available under license 1.9 Expat XML Parser - Series 1 v1.2 1.9.1 Available under license 1.10 freebsd-tty-headers n/a 1.10.1 Available under license 1.11 ftp.h 4.4BSD? 1.11.1 Available under license 1.12 inflate.c c10p1 1.12.1 Available under license 1.13 iniparser 2.8 Open Source Used In Cisco IOS -
Linux Lunacy V & Perl Whirl
SPEAKERS Linux Lunacy V Nicholas Clark Scott Collins & Perl Whirl ’05 Mark Jason Dominus Andrew Dunstan Running Concurrently brian d foy Jon “maddog” Hall Southwestern Caribbean Andrew Morton OCTOBER 2ND TO 9TH, 2005 Ken Pugh Allison Randal Linux Lunacy V and Perl Whirl ’05 run concurrently. Attendees can mix and match, choosing courses from Randal Schwartz both conferences. Doc Searls Ted Ts’o Larry Wall Michael Warfield DAY PORT ARRIVE DEPART CONFERENCE SESSIONS Sunday, Oct 2 Tampa, Florida — 4:00pm 7:15pm, Bon Voyage Party Monday, Oct 3 Cruising The Caribbean — — 8:30am – 5:00pm Tuesday, Oct 4 Grand Cayman 7:00am 4:00pm 4:00pm – 7:30pm Wednesday, Oct 5 Costa Maya, Mexico 10:00am 6:00pm 6:00pm – 7:30pm Thursday, Oct 6 Cozumel, Mexico 7:00am 6:00pm 6:00pm – 7:30pm Friday, Oct 7 Belize City, Belize 7:30am 4:30pm 4:30pm – 8:00pm Saturday, Oct 8 Cruising The Caribbean — — 8:30am – 5:00pm Sunday, Oct 9 Tampa, Florida 8:00am — Perl Whirl ’05 and Linux Lunacy V Perl Whirl ’05 are running concurrently. Attendees can mix and match, choosing courses Seminars at a Glance from both conferences. You may choose any combination Regular Expression Mastery (half day) Programming with Iterators and Generators of full-, half-, or quarter-day seminars Speaker: Mark Jason Dominus Speaker: Mark Jason Dominus (half day) for a total of two-and-one-half Almost everyone has written a regex that failed Sometimes you’ll write a function that takes too (2.5) days’ worth of sessions. The to match something they wanted it to, or that long to run because it produces too much useful conference fee is $995 and includes matched something they thought it shouldn’t, and information. -
When Geeks Cruise
COMMUNITY Geek Cruise: Linux Lunacy Linux Lunacy, Perl Whirl, MySQL Swell: Open Source technologists on board When Geeks Cruise If you are on one of those huge cruising ships and, instead of middle-aged ladies sipping cocktails, you spot a bunch of T-shirt touting, nerdy looking guys hacking on their notebooks in the lounges, chances are you are witnessing a “Geek Cruise”. BY ULRICH WOLF eil Baumann, of Palo Alto, Cali- and practical tips on application develop- The dedicated Linux track comprised a fornia, has been organizing geek ment – not only for Perl developers but meager spattering of six lectures, and Ncruises since 1999 (http://www. for anyone interested in programming. though there was something to suit geekcruises.com/), Neil always finds everyone’s taste, the whole thing tended enough open source and programming Perl: Present and to lack detail. Ted T’so spent a long time celebrities to hold sessions on Linux, (Distant?) Future talking about the Ext2 and Ext3 file sys- Perl, PHP and other topics dear to geeks. In contrast, Allison Randal’s tutorials on tems, criticizing ReiserFS along the way, Parrot Assembler and Perl6 features were but had very little to say about network Open Source Celebs hardcore. Thank goodness Larry Wall file systems, an increasingly vital topic. on the Med summed up all the major details on Perl6 Developers were treated to a lecture on I was lucky enough to get on board the in a brilliant lecture that was rich with developing shared libraries, and admins first Geek Cruise on the Mediterranean, metaphors and bursting with informa- enjoyed sessions on Samba and hetero- scaring the nerds to death with my tion. -
Long-Term Sustainability of Open Source Software Communities Beyond a Fork: a Case Study of Libreoffice Jonas Gamalielsson, Björn Lundell
Long-Term Sustainability of Open Source Software Communities beyond a Fork: A Case Study of LibreOffice Jonas Gamalielsson, Björn Lundell To cite this version: Jonas Gamalielsson, Björn Lundell. Long-Term Sustainability of Open Source Software Communities beyond a Fork: A Case Study of LibreOffice. 8th International Conference on Open Source Systems (OSS), Sep 2012, Hammamet, Tunisia. pp.29-47, 10.1007/978-3-642-33442-9_3. hal-01519071 HAL Id: hal-01519071 https://hal.inria.fr/hal-01519071 Submitted on 5 May 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Long-term Sustainability of Open Source Software Communities beyond a Fork: a Case Study of LibreOffice Jonas Gamalielsson and Björn Lundell University of Skövde, Skövde, Sweden, {jonas.gamalielsson,bjorn.lundell}@his.se Abstract. Many organisations have requirements for long-term sustainable software systems and associated communities. In this paper we consider long- term sustainability of Open Source software communities in Open Source projects involving a fork. There is currently a lack of studies in the literature that address how specific Open Source software communities are affected by a fork. -
Minimal Perl for UNIX and Linux People
Minimal Perl For UNIX and Linux People BY TIM MAHER MANNING Greenwich (74° w. long.) For online information and ordering of this and other Manning books, please visit www.manning.com. The publisher offers discounts on this book when ordered in quantity. For more information, please contact: Special Sales Department Manning Publications Co. Cherokee Station PO Box 20386 Fax: (609) 877-8256 New York, NY 10021 email: [email protected] ©2007 by Manning Publications Co. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by means electronic, mechanical, photocopying, or otherwise, without prior written permission of the publisher. Many of the designations used by manufacturers and sellers to distinguish their products are claimed as trademarks. Where those designations appear in the book, and Manning Publications was aware of a trademark claim, the designations have been printed in initial caps or all caps. Recognizing the importance of preserving what has been written, it is Manning’s policy to have the books we publish printed on acid-free paper, and we exert our best efforts to that end. Manning Publications Co. Copyeditor: Tiffany Taylor 209 Bruce Park Avenue Typesetters: Denis Dalinnik, Dottie Marsico Greenwich, CT 06830 Cover designer: Leslie Haimes ISBN 1-932394-50-8 Printed in the United States of America 12345678910–VHG–1009080706 To Yeshe Dolma Sherpa, whose fortitude, endurance, and many sacrifices made this book possible. To my parents, Gloria Grady Washington and William N. Maher, who indulged my early interests in literature. To my limbic system, with gratitude for all the good times we’ve had together. -
1. with Examples of Different Programming Languages Show How Programming Languages Are Organized Along the Given Rubrics: I
AGBOOLA ABIOLA CSC302 17/SCI01/007 COMPUTER SCIENCE ASSIGNMENT 1. With examples of different programming languages show how programming languages are organized along the given rubrics: i. Unstructured, structured, modular, object oriented, aspect oriented, activity oriented and event oriented programming requirement. ii. Based on domain requirements. iii. Based on requirements i and ii above. 2. Give brief preview of the evolution of programming languages in a chronological order. 3. Vividly distinguish between modular programming paradigm and object oriented programming paradigm. Answer 1i). UNSTRUCTURED LANGUAGE DEVELOPER DATE Assembly Language 1949 FORTRAN John Backus 1957 COBOL CODASYL, ANSI, ISO 1959 JOSS Cliff Shaw, RAND 1963 BASIC John G. Kemeny, Thomas E. Kurtz 1964 TELCOMP BBN 1965 MUMPS Neil Pappalardo 1966 FOCAL Richard Merrill, DEC 1968 STRUCTURED LANGUAGE DEVELOPER DATE ALGOL 58 Friedrich L. Bauer, and co. 1958 ALGOL 60 Backus, Bauer and co. 1960 ABC CWI 1980 Ada United States Department of Defence 1980 Accent R NIS 1980 Action! Optimized Systems Software 1983 Alef Phil Winterbottom 1992 DASL Sun Micro-systems Laboratories 1999-2003 MODULAR LANGUAGE DEVELOPER DATE ALGOL W Niklaus Wirth, Tony Hoare 1966 APL Larry Breed, Dick Lathwell and co. 1966 ALGOL 68 A. Van Wijngaarden and co. 1968 AMOS BASIC FranÇois Lionet anConstantin Stiropoulos 1990 Alice ML Saarland University 2000 Agda Ulf Norell;Catarina coquand(1.0) 2007 Arc Paul Graham, Robert Morris and co. 2008 Bosque Mark Marron 2019 OBJECT-ORIENTED LANGUAGE DEVELOPER DATE C* Thinking Machine 1987 Actor Charles Duff 1988 Aldor Thomas J. Watson Research Center 1990 Amiga E Wouter van Oortmerssen 1993 Action Script Macromedia 1998 BeanShell JCP 1999 AngelScript Andreas Jönsson 2003 Boo Rodrigo B.