bioRxiv preprint doi: https://doi.org/10.1101/2021.05.14.444199; this version posted May 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Transcriptome analysis reveals higher levels of mobile element-associated abnormal gene transcripts in temporal lobe epilepsy patients Kai Hu a,b,*, Ping Liang b,** a Department of Neurology, Xiangya Hospital, Central South University, Xiangya Road 87, Changsha, Hunan 410008, China b Department of Biological Sciences, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, L2S 3A1, Ontario, Canada * Corresponding author at: Department of Neurology, Xiangya Hospital, Central South University, Xiangya Road 87, Changsha, Hunan, China 410008 ** Corresponding author at: Department of Biological Sciences, Brock University, 1812 Sir Isaac Brock Way, St. Catharines, Ontario, Canada, L2S 3A1 Email addresses:
[email protected] (Kai Hu),
[email protected] (Ping Liang). bioRxiv preprint doi: https://doi.org/10.1101/2021.05.14.444199; this version posted May 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract: Objective: To determine role of abnormal splice variants associated with mobile elements in epilepsy. Methods: Publicly available human RNA-seq-based transcriptome data for laser- captured dentate granule cells of post-mortem hippocampal tissues from temporal lobe epilepsy patients with (TLE, N=14 for 7 subjects) and without hippocampal sclerosis (TLE-HS, N=8 for 5 subjects) and healthy individuals (N=51), surgically resected bulk neocortex tissues from TLE patients (TLE-NC, N=17).