ER Stress Stimulates Production of the Key Antimicrobial Peptide, Cathelicidin, by Forming a Previously Unidentified Intracellular S1P Signaling Complex

Total Page:16

File Type:pdf, Size:1020Kb

ER Stress Stimulates Production of the Key Antimicrobial Peptide, Cathelicidin, by Forming a Previously Unidentified Intracellular S1P Signaling Complex ER stress stimulates production of the key antimicrobial peptide, cathelicidin, by forming a previously unidentified intracellular S1P signaling complex Kyungho Parka,b, Hiroko Ikushiroc,1, Ho Seong Seod,1, Kyong-Oh Shine, Young il Kima,b, Jong Youl Kimb,f, Yong-Moon Leee, Takato Yanoc, Walter M. Hollerana,b, Peter Eliasa,b, and Yoshikazu Uchidaa,b,2 aDepartment of Dermatology, School of Medicine, University of California, San Francisco, CA 94158; bNorthern California Institute for Research and Education, Veterans Affairs Medical Center, San Francisco, CA 94121; cDepartment of Biochemistry, Osaka Medical College, Takatsuki, Osaka 569-8686, Japan; dRadiation Research Division, Korea Atomic Energy Research Institute, Jeongeup 580-185, Republic of Korea; eCollege of Pharmacy, Chungbuk National University, Cheongju 361-763, Republic of Korea; and fDepartment of Endocrinology, School of Medicine, University of California, San Francisco, CA 94121 Edited by Sen-itiroh Hakomori, Pacific Northwest Research Institute, Seattle, WA, and approved January 19, 2016 (received for review March 5, 2015) We recently identified a previously unidentified sphingosine-1- synthesis under basal conditions (3, 7). However, CAMP produc- phosphate (S1P) signaling mechanism that stimulates production tion is not only always beneficial: Although transient increases of a key innate immune element, cathelicidin antimicrobial pep- defend against microbial pathogens, sustained production of this tide (CAMP), in mammalian cells exposed to external perturbations, AMP can stimulate downstream inflammatory responses, and such as UVB irradiation and other oxidative stressors that provoke even tumorigenesis (1). subapoptotic levels of endoplasmic reticulum (ER) stress, independent S1P modulates a variety of cellular functions (e.g., cell pro- of the well-known vitamin D receptor-dependent mechanism. ER liferation, differentiation and motility) through well-known G pro- stress increases cellular ceramide and one of its distal metabolites, tein coupled, S1P receptor-dependent mechanisms (8). However, S1P, which activates NF-κBfollowedbyC/EBPα activation, leading to we showed recently that ER stress-stimulated CAMP production CAMP production, but in a S1P receptor-independent fashion. We is likely receptor-independent (7). Although prior studies showed now show that S1P activates NF-κB through formation of a previ- that ER stress activates NF-κB via plasma membrane-localized ously unidentified signaling complex, consisting of S1P, TRAF2, and S1P1, S1P2, and S1P3 receptor activation (9, 10), using specific RIP1 that further associates with three stress-responsive proteins; i.e., activators/agonists and inhibitors/antagonists of all five identified heat shock proteins (GRP94 and HSP90α)andIRE1α. S1P specifically S1P receptors (S1P1–S1P5), we showed that these pharmacolog- interacts with the N-terminal domain of heat shock proteins. Because ical interventions did not modify the ER stress-induced increase in this ER stress-initiated mechanism is operative in both epithelial cells CAMP expression (7). Although prior study shows that TNFα and macrophages, it appears to be a universal, highly conserved receptor activation can initiate S1P binding to TRAF2 on plasma response, broadly protective against diverse external perturba- membrane, forming a signaling complex (S1P–TRAF2–TRADD– tions that lead to increased ER stress. Finally, these studies further RIP1) that activates NF-κB (11), this mechanism does not appear illuminate how ER stress and S1P orchestrate critical stress-specific to regulate CAMP synthesis. Instead, we identify and delineate a signals that regulate production of one protective response by stim- previously unidentified TNFα receptor- and a S1P receptor- ulating production of the key innate immune element, CAMP. independent mechanism that regulate CAMP production through intracellular assembly of a S1P–TRAF2-stress-responsive protein ER stress | sphingosine-1-phosphate | heat shock protein 90 | cathelicidin | signaling complex that forms in response to ER stress. Elucidation innate immunity Significance ammalian epithelial tissues face hostile external environ- Mments, where they are repeatedly bombarded by external The cathelicidin antimicrobial peptide (CAMP) is an innate im- perturbants, such as UV irradiation, oxidative stress and micro- mune element that promotes antimicrobial defense, but ex- bial pathogens that potentially threaten the integrity of epithelial cessive CAMP can stimulate inflammation and tumorigenesis. and nonepithelial tissues/cells. Antimicrobial peptides (AMPs) We recently discovered that external perturbations that induce represent highly conserved, innate immune elements that protect subtoxic levels of endoplasmic reticulum (ER) stress increase the host from microbial pathogens, while also signaling a variety sphingosine-1-phosphate (S1P) production, in turn activating of downstream responses that further fortify innate and adaptive NF-κB–mediated CAMP synthesis. We report here that S1P in- immunity (1, 2). We have shown that AMP production increases teracts with the heat shock proteins (HSP90α and GRP94) not only in response to microbial challenges, but also in response through a previously unidentified S1P receptor-independent to a wide variety of other external perturbations that converge on intracellular mechanism, followed by the activation of NF-κB the endoplasmic reticulum (ER), where AMP orchestrate a host leading to stimulation of CAMP production. These studies illu- of ER-initiated stress responses (3). Although high doses of ex- minate the critical role of both ER stress and S1P in orchestrating ternal perturbants can cause excessive ER stress, leading to in- stress-specific signals that enhance innate immunity. creased production of the proapoptotic lipid ceramide, threatening Author contributions: K.P. and Y.U. designed research; K.P., H.I., H.S.S., K.-O.S., Y.i.K., and cells with apoptosis (4, 5), subtoxic levels of the same perturbants J.Y.K. performed research; K.P., H.I., K.-O.S., Y.-M.L., T.Y., W.M.H., and Y.U. analyzed data; instead provoke lower levels of ER stress, with incrementally re- K.P., P.E., and Y.U. wrote the paper; Y.U. developed the concept; Y.U. designed experi- duced ceramide production that rescues cells from apoptosis in ments; and Y.U. directed the project. part through metabolic conversion of ceramide to sphingosine- The authors declare no conflict of interest. 1-phosphate (S1P) (6). S1P in turn stimulates production of the key This article is a PNAS Direct Submission. AMP, cathelicidin AMP (CAMP), and its downstream proteolytic 1H.I. and H.S.S. contributed equally to this work. product, LL-37, through transactivation of NF-κB–C/EBPα (7). 2To whom correspondence should be addressed. Email: [email protected]. This mechanism operates independently of the well-known vitamin This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10. D receptor-dependent mechanism, which instead regulates CAMP 1073/pnas.1504555113/-/DCSupplemental. E1334–E1342 | PNAS | Published online February 22, 2016 www.pnas.org/cgi/doi/10.1073/pnas.1504555113 Downloaded by guest on September 27, 2021 of this previously unidentified regulatory mechanism could point to supporting the idea that S1P generated by SPHK1 is responsible for PNAS PLUS potentially previously undeveloped therapeutic approaches to ei- stimulation of CAMP production. Moreover, Lys63 (K63)-linked ther enhance innate immunity or to suppress excessive CAMP polyubiquitination of RIP1, which is required for NF-κB activation, production causing inflammation and tumorigenesis. was suppressed by a blockade of SPHK1 using PF-543 or SPHK1 siRNA (Fig. 2 A and D). These results ascertained our prior find- Results ings that S1P signaling generated by SPHK1 is essential for ER S1P Generated by SPHK1 Stimulates CAMP Production Through S1P stress-induced CAMP expression through NF-κB activation. Receptor-Independent Activation of NF-κB in Response to ER Stress. Although previous findings showed that ER stress activates Because mammalian epidermis is continuously threatened by the NF-κB via S1P1, S1P2, and S1P3 receptor activation (9, 10), our external environment, we used cultured human epidermal ker- prior studies revealed that pharmacological interventions using atinocytes (KC) as our primarily model in these studies. specific activators/agonists and inhibitors/antagonists of all five Our prior study characterized that S1P generated by sphingo- identified S1P receptors (S1P1–S1P5) did not modify the ER sine kinase (SPHK) 1 activates NF-κB, leading to stimulation of stress-induced increase in CAMP expression (7). We first con- CAMP production in KC in response to ER stress (7). Consistent firmed whether S1P-mediated stimulation of CAMP expression in with this prior study (7), increased S1P and CAMP production in vivo is S1P receptor-independent. Topical applications of Tg pro- response to ER stress [induced by an ER stressor, thapsigargin (Tg) duced comparable increases in mRNA and protein production of + + that releases Ca2 from ER by inhibition of sarco-ER Ca2 -ATPases; the murine homolog of CAMP (13) in the epidermis of S1P1-, ref. 12] were suppressed by a specific inhibitor of SPHK1, PF-543, S1P2-, and S1P3-null and wild-type mice (SI Appendix,Fig.S3A, which significantly inhibited an isoform of SPHK, SPHK1, but not B, D,andE). Pertinently, topical Tg also comparably increased SPHK2, at concentrations ≥ 1 μMinKC(Fig.1A–C)
Recommended publications
  • STUB1 / CHIP Antibody Rabbit Polyclonal Antibody Catalog # ALS16226
    10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 STUB1 / CHIP Antibody Rabbit Polyclonal Antibody Catalog # ALS16226 Specification STUB1 / CHIP Antibody - Product Information Application WB Primary Accession Q9UNE7 Reactivity Human Host Rabbit Clonality Polyclonal Calculated MW 35kDa KDa STUB1 / CHIP Antibody - Additional Information Sample (30 ug of whole cell lysate) A: 293T Gene ID 10273 10% SDS PAGE STUB1 antibody diluted at 1:10000 Other Names E3 ubiquitin-protein ligase CHIP, 6.3.2.-, Antigen NY-CO-7, CLL-associated antigen STUB1 / CHIP Antibody - Background KW-8, Carboxy terminus of Hsp70-interacting protein, STIP1 homology and U box-containing protein 1 E3 ubiquitin-protein ligase which targets {ECO:0000312|HGNC:HGNC:11427}, STUB1 misfolded chaperone substrates towards (<a href="http://www.genenames.org/cgi-bi proteasomal degradation. Collaborates with n/gene_symbol_report?hgnc_id=11427" ATXN3 in the degradation of misfolded target="_blank">HGNC:11427</a>) chaperone substrates: ATXN3 restricting the length of ubiquitin chain attached to Target/Specificity STUB1/CHIP substrates and preventing further Human STUB1 chain extension. Ubiquitinates NOS1 in concert with Hsp70 and Hsp40. Modulates the activity Reconstitution & Storage of several chaperone complexes, including Keep as concentrated solution. Aliquot and Hsp70, Hsc70 and Hsp90. Mediates transfer of store at -20°C or below. Avoid multiple non-canonical short ubiquitin chains to HSPA8 freeze-thaw cycles. that have no effect on HSPA8 degradation. Mediates polyubiquitination of DNA polymerase Precautions beta (POLB) at 'Lys-41', 'Lys-61' and 'Lys-81', STUB1 / CHIP Antibody is for research use thereby playing a role in base-excision repair: only and not for use in diagnostic or catalyzes polyubiquitination by amplifying the therapeutic procedures.
    [Show full text]
  • Ubiquitin-Conjugating Enzyme UBE2J1 Negatively Modulates
    Feng et al. Virology Journal (2018) 15:132 https://doi.org/10.1186/s12985-018-1040-5 RESEARCH Open Access Ubiquitin-conjugating enzyme UBE2J1 negatively modulates interferon pathway and promotes RNA virus infection Tingting Feng1, Lei Deng1, Xiaochuan Lu1, Wen Pan1, Qihan Wu2* and Jianfeng Dai1,2* Abstract Background: Viral infection activates innate immune pathways and interferons (IFNs) play a pivotal role in the outcome of a viral infection. Ubiquitin modifications of host and viral proteins significantly influence the progress of virus infection. Ubiquitin-conjugating enzyme E2s (UBE2) have the capacity to determine ubiquitin chain topology and emerge as key mediators of chain assembly. Methods: In this study, we screened the functions of 34 E2 genes using an RNAi library during Dengue virus (DENV) infection. RNAi and gene overexpression approaches were used to study the gene function in viral infection and interferon signaling. Results: We found that silencing UBE2J1 significantly impaired DENV infection, while overexpression of UBE2J1 enhanced DENV infection. Further studies suggested that type I IFN expression was significantly increased in UBE2J1 silenced cells and decreased in UBE2J1 overexpressed cells. Reporter assay suggested that overexpression of UBE2J1 dramatically suppressed RIG-I directed IFNβ promoter activation. Finally, we have confirmed that UBE2J1 can facilitate the ubiquitination and degradation of transcription factor IFN regulatory factor 3 (IRF3). Conclusion: These results suggest that UBE2 family member UBE2J1 can negatively regulate type I IFN expression, thereby promote RNA virus infection. Keywords: UBE2J1, Dengue virus, Interferons, IRF3, K48 ubiquitination Background antiviral responses [3]. IFN-α/β regulates the synthesis Dengue virus (DENV), transmitted by Aedes aegypti and of antiviral proteins and immunoregulatory factors Aedes albopicuts, causes an emerging tropical disease through the JAK/STAT signaling pathway [4, 5].
    [Show full text]
  • The Functions of CHIP in Age Related Disease
    Central JSM Enzymology and Protein Science Bringing Excellence in Open Access Review Article *Corresponding author Kathryn L Ball, The Institute of Genetics and Molecular Medicine, Edinburgh Cancer Research Centre, The Functions of CHIP in Age University of Edinburgh, Western General Hospital, Crewe Road South, EH4 2XR, UK, Tel: +44 0-131-651-8500; E-mail: Related Disease Submitted: 03 August 2016 Ball KL*, Ning J, Nita E, and Dias C Accepted: 29 September 2016 Institute of Genetics and Molecular Medicine, University of Edinburgh, UK Published: 01 October 2016 Copyright Abstract © 2016 Ball et al. CHIP is a key component of the protein homeostasis or ‘Proteostasis’ network OPEN ACCESS that maintains protein structure and function as a way to ensure the integrity of the proteome in individual cells and the health of the whole organism. Proteostasis Keywords influences the biogenesis, folding, trafficking and degradation of proteins. Originally • CHIP identified as a Hsc70 associated protein and a co-chaperone CHIP has E3-ubiquitin • E3-ligase ligase activity and also displays an intrinsic chaperoning ability. It has become clear • Chaperone that CHIP is a multi-functional protein with roles in cellular processes that go beyond • Structure function its co-chaperone activity. Not surprisingly, by unravelling the functions of CHIP, we are • Neurodegeneration beginning to appreciate that loss of CHIP’s integrity can lead to the development of • Cancer several serious pathological conditions. Here we will describe the key features of CHIPs structure and functions with an emphasis on the non-canonical activities of CHIP before concentrating on the role it plays in protecting against the age associated pathologies of neurodegeneration and cancer.
    [Show full text]
  • The E2 Ubiquitin-Conjugating Enzyme UBE2J1 Is Required for Spermiogenesis in Mice
    The E2 Ubiquitin-conjugating Enzyme UBE2J1 Is Required for Spermiogenesis in Mice The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Koenig, Paul-Albert, Peter K. Nicholls, Florian I. Schmidt, Masatoshi Hagiwara, Takeshi Maruyama, Galit H. Frydman, Nicki Watson, David C. Page, and Hidde L. Ploegh. “The E2 Ubiquitin-Conjugating Enzyme UBE2J1 Is Required for Spermiogenesis in Mice.” Journal of Biological Chemistry 289, no. 50 (October 15, 2014): 34490–34502. © 2014 American Society for Biochemistry and Molecular Biology, Inc. (ASBMB) As Published http://dx.doi.org/10.1074/jbc.M114.604132 Publisher American Society for Biochemistry and Molecular Biology (ASBMB) Version Author's final manuscript Citable link http://hdl.handle.net/1721.1/108038 Terms of Use Creative Commons Attribution-Noncommercial-Share Alike Detailed Terms http://creativecommons.org/licenses/by-nc-sa/4.0/ Male Ube2j1-/- mice are sterile The E2 Ubiquitin Conjugating Enzyme UBE2J1 is Required for Spermiogenesis in Mice Paul-Albert Koenig1, Peter K. Nicholls1, Florian I. Schmidt1, Masatoshi Hagiwara1, Takeshi Maruyama1, Galit H. Frydman2, Nicki Watson1, David C. Page1,3,4, Hidde L. Ploegh1,3 1 Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA 2 Division of Comparative Medicine, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 3 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA 4 Howard Hughes Medical Institute, Cambridge, MA 02142,
    [Show full text]
  • 1 Supporting Information for a Microrna Network Regulates
    Supporting Information for A microRNA Network Regulates Expression and Biosynthesis of CFTR and CFTR-ΔF508 Shyam Ramachandrana,b, Philip H. Karpc, Peng Jiangc, Lynda S. Ostedgaardc, Amy E. Walza, John T. Fishere, Shaf Keshavjeeh, Kim A. Lennoxi, Ashley M. Jacobii, Scott D. Rosei, Mark A. Behlkei, Michael J. Welshb,c,d,g, Yi Xingb,c,f, Paul B. McCray Jr.a,b,c Author Affiliations: Department of Pediatricsa, Interdisciplinary Program in Geneticsb, Departments of Internal Medicinec, Molecular Physiology and Biophysicsd, Anatomy and Cell Biologye, Biomedical Engineeringf, Howard Hughes Medical Instituteg, Carver College of Medicine, University of Iowa, Iowa City, IA-52242 Division of Thoracic Surgeryh, Toronto General Hospital, University Health Network, University of Toronto, Toronto, Canada-M5G 2C4 Integrated DNA Technologiesi, Coralville, IA-52241 To whom correspondence should be addressed: Email: [email protected] (M.J.W.); yi- [email protected] (Y.X.); Email: [email protected] (P.B.M.) This PDF file includes: Materials and Methods References Fig. S1. miR-138 regulates SIN3A in a dose-dependent and site-specific manner. Fig. S2. miR-138 regulates endogenous SIN3A protein expression. Fig. S3. miR-138 regulates endogenous CFTR protein expression in Calu-3 cells. Fig. S4. miR-138 regulates endogenous CFTR protein expression in primary human airway epithelia. Fig. S5. miR-138 regulates CFTR expression in HeLa cells. Fig. S6. miR-138 regulates CFTR expression in HEK293T cells. Fig. S7. HeLa cells exhibit CFTR channel activity. Fig. S8. miR-138 improves CFTR processing. Fig. S9. miR-138 improves CFTR-ΔF508 processing. Fig. S10. SIN3A inhibition yields partial rescue of Cl- transport in CF epithelia.
    [Show full text]
  • UBE2J1 Sirna Set I UBE2J1 Sirna Set I
    Catalog # Aliquot Size U225-911-05 3 x 5 nmol U225-911-20 3 x 20 nmol U225-911-50 3 x 50 nmol UBE2J1 siRNA Set I siRNA duplexes targeted against three exon regions Catalog # U225-911 Lot # Z2109-26 Specificity Formulation UBE2J1 siRNAs are designed to specifically knock-down The siRNAs are supplied as a lyophilized powder and human UBE2J1 expression. shipped at room temperature. Product Description Reconstitution Protocol UBE2J1 siRNA is a pool of three individual synthetic siRNA Briefly centrifuge the tubes (maximum RCF 4,000g) to duplexes designed to knock-down human UBE2J1 mRNA collect lyophilized siRNA at the bottom of the tube. expression. Each siRNA is 19-25 bases in length. The gene Resuspend the siRNA in 50 µl of DEPC-treated water accession number is BC013973. (supplied by researcher), which results in a 1x stock solution (10 µM). Gently pipet the solution 3-5 times to mix Gene Aliases and avoid the introduction of bubbles. Optional: aliquot CGI-76; HSPC153; HSPC205; HSU93243; NCUBE-1; NCUBE1; 1x stock solutions for storage. UBC6; Ubc6p Related Products Storage and Stability The lyophilized powder is stable for at least 4 weeks at Product Name Catalog Number room temperature. It is recommended that the UBE2E3 (UBCH9) Protein U219-30H lyophilized and resuspended siRNAs are stored at or UBE2F Protein U220-30H below -20oC. After resuspension, siRNA stock solutions ≥2 UBE2G1 (UBC7) Protein U221-30H µM can undergo up to 50 freeze-thaw cycles without UBE2H Protein U223-30H significant degradation. For long-term storage, it is UBE2I Protein U224-30H recommended that the siRNA is stored at -70oC.
    [Show full text]
  • Kinase SH3 NH2 Cdc42
    A Dissertation The E3 Ligase CHIP Mediates Ubiquitination and Degradation of Mixed Lineage Kinase 3 and Mixed Lineage Kinase 4 Beta by Natalya A. Blessing Submitted to the Graduate Faculty as partial fulfillment of the requirements for the Doctor of Philosophy Degree in Biology _________________________________________ Dr. Deborah Chadee, Committee Chair _________________________________________ Dr. Richard Komuniecki, Committee Member _________________________________________ Dr. Malathi Krishnamurthy, Committee Member _________________________________________ Dr. Frank Pizza, Committee Member _________________________________________ Dr. Don Ronning, Committee Member _________________________________________ Dr. Patricia R. Komuniecki, Dean College of Graduate Studies The University of Toledo May 2015 Copyright 2015, Natalya A. Blessing This document is copyrighted material. Under copyright law, no parts of this document may be reproduced without the expressed permission of the author. An Abstract of The E3 Ligase CHIP Mediates Ubiquitination and Degradation of Mixed Lineage Kinase 3 and Mixed Lineage Kinase 4 Beta by Natalya Blessing Submitted to the Graduate Faculty as partial fulfillment of the requirements for the Doctor of Philosophy Degree in Biology The University of Toledo May 2015 The mixed lineage kinases (MLKs) are serine/threonine mitogen-activated protein kinase kinase kinases (MAP3Ks) that modulate the activities of extracellular signal- regulated kinase, c-Jun N-terminal kinase, and p38 signaling pathways. MLK3 plays a pivotal role in cell invasion, tumorigenesis and metastasis. Wild type MLK4 negatively regulates MAPK signaling by possibly inhibiting MLK3 activation, while mutant MLK4 plays in important role in driving colorectal cancer and glioblastomal tumorigenesis (Martini et al., 2013). The mechanisms by which MLK3 and MLK4 protein levels are regulated in cells are unknown. The carboxyl terminus of HSC-70 interacting protein (CHIP) is a U-box E3 ubiquitin ligase that regulates cytosolic protein degradation in response to stress.
    [Show full text]
  • STUB1 Mutations in Autosomal Recessive Ataxias
    Heimdal et al. Orphanet Journal of Rare Diseases 2014, 9:146 http://www.ojrd.com/content/9/1/146 RESEARCH Open Access STUB1 mutations in autosomal recessive ataxias – evidence for mutation-specific clinical heterogeneity Ketil Heimdal1*, Monica Sanchez-Guixé2,3, Ingvild Aukrust2, Jens Bollerslev4,5, Ove Bruland2, Greg Eigner Jablonski6, Anne Kjersti Erichsen7, Einar Gude8, Jeanette A Koht9, Sigrid Erdal2, Torunn Fiskerstrand2,3, Bjørn Ivar Haukanes2, Helge Boman2, Lise Bjørkhaug10, Chantal ME Tallaksen11,12, Per M Knappskog2,13† and Stefan Johansson2,13† Abstract Background: A subset of hereditary cerebellar ataxias is inherited as autosomal recessive traits (ARCAs). Classification of recessive ataxias due to phenotypic differences in the cerebellum and cerebellar structures is constantly evolving due to new identified disease genes. Recently, reports have linked mutations in genes involved in ubiquitination (RNF216, OTUD4, STUB1) to ARCA with hypogonadism. Methods and results: With a combination of homozygozity mapping and exome sequencing, we identified three mutations in STUB1 in two families with ARCA and cognitive impairment; a homozygous missense variant (c.194A > G, p.Asn65Ser) that segregated in three affected siblings, and a missense change (c.82G > A, p.Glu28Lys) which was inherited in trans with a nonsense mutation (c.430A > T, p.Lys144Ter) in another patient. STUB1 encodes CHIP (C-terminus of Heat shock protein 70 – Interacting Protein), a dual function protein with a role in ubiquitination as a co-chaperone with heat shock proteins, and as an E3 ligase. We show that the p.Asn65Ser substitution impairs CHIP’s ability to ubiquitinate HSC70 in vitro, despite being able to self-ubiquitinate.
    [Show full text]
  • Aggresomal Sequestration and STUB1-Mediated Ubiquitylation During Mammalian Proteaphagy of Inhibited Proteasomes
    Aggresomal sequestration and STUB1-mediated ubiquitylation during mammalian proteaphagy of inhibited proteasomes Won Hoon Choia,b, Yejin Yuna,b, Seoyoung Parka,c, Jun Hyoung Jeona,b, Jeeyoung Leea,b, Jung Hoon Leea,c, Su-A Yangd, Nak-Kyoon Kime, Chan Hoon Jungb, Yong Tae Kwonb, Dohyun Hanf, Sang Min Lime, and Min Jae Leea,b,c,1 aDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, 03080 Seoul, Korea; bDepartment of Biomedical Sciences, Seoul National University Graduate School, 03080 Seoul, Korea; cNeuroscience Research Institute, Seoul National University College of Medicine, 03080 Seoul, Korea; dScience Division, Tomocube, 34109 Daejeon, Korea; eConvergence Research Center for Diagnosis, Korea Institute of Science and Technology, 02792 Seoul, Korea; and fProteomics Core Facility, Biomedical Research Institute, Seoul National University Hospital, 03080 Seoul, Korea Edited by Richard D. Vierstra, Washington University in St. Louis, St. Louis, MO, and approved July 1, 2020 (received for review November 18, 2019) The 26S proteasome, a self-compartmentalized protease complex, additional LC3-interacting region; the target cargoes can be plays a crucial role in protein quality control. Multiple levels of docked onto phosphatidylethanolamine-modified LC3 (LC3-II) regulatory systems modulate proteasomal activity for substrate on the expanding phagophore membrane, enveloped by an hydrolysis. However, the destruction mechanism of mammalian autophagosome, and eventually degraded in the autolysosomes. proteasomes is poorly understood. We found that inhibited pro- Notably, the enzymatic cascade attaching the lipid moiety at the teasomes are sequestered into the insoluble aggresome via C-terminal glycine of the cleaved LC3 protein in autophagy re- HDAC6- and dynein-mediated transport.
    [Show full text]
  • Epigenetic Mechanisms Are Involved in the Oncogenic Properties of ZNF518B in Colorectal Cancer
    Epigenetic mechanisms are involved in the oncogenic properties of ZNF518B in colorectal cancer Francisco Gimeno-Valiente, Ángela L. Riffo-Campos, Luis Torres, Noelia Tarazona, Valentina Gambardella, Andrés Cervantes, Gerardo López-Rodas, Luis Franco and Josefa Castillo SUPPLEMENTARY METHODS 1. Selection of genomic sequences for ChIP analysis To select the sequences for ChIP analysis in the five putative target genes, namely, PADI3, ZDHHC2, RGS4, EFNA5 and KAT2B, the genomic region corresponding to the gene was downloaded from Ensembl. Then, zoom was applied to see in detail the promoter, enhancers and regulatory sequences. The details for HCT116 cells were then recovered and the target sequences for factor binding examined. Obviously, there are not data for ZNF518B, but special attention was paid to the target sequences of other zinc-finger containing factors. Finally, the regions that may putatively bind ZNF518B were selected and primers defining amplicons spanning such sequences were searched out. Supplementary Figure S3 gives the location of the amplicons used in each gene. 2. Obtaining the raw data and generating the BAM files for in silico analysis of the effects of EHMT2 and EZH2 silencing The data of siEZH2 (SRR6384524), siG9a (SRR6384526) and siNon-target (SRR6384521) in HCT116 cell line, were downloaded from SRA (Bioproject PRJNA422822, https://www.ncbi. nlm.nih.gov/bioproject/), using SRA-tolkit (https://ncbi.github.io/sra-tools/). All data correspond to RNAseq single end. doBasics = TRUE doAll = FALSE $ fastq-dump -I --split-files SRR6384524 Data quality was checked using the software fastqc (https://www.bioinformatics.babraham. ac.uk /projects/fastqc/). The first low quality removing nucleotides were removed using FASTX- Toolkit (http://hannonlab.cshl.edu/fastxtoolkit/).
    [Show full text]
  • Hypoxia Induces P53-Dependent Transactivation and Fas/CD95-Dependent Apoptosis
    Cell Death and Differentiation (2007) 14, 411–421 & 2007 Nature Publishing Group All rights reserved 1350-9047/07 $30.00 www.nature.com/cdd Hypoxia induces p53-dependent transactivation and Fas/CD95-dependent apoptosis T Liu1,4, C Laurell2,4, G Selivanova3, J Lundeberg2, P Nilsson2 and KG Wiman*,1 p53 triggers apoptosis in response to cellular stress. We analyzed p53-dependent gene and protein expression in response to hypoxia using wild-type p53-carrying or p53 null HCT116 colon carcinoma cells. Hypoxia induced p53 protein levels and p53- dependent apoptosis in these cells. cDNA microarray analysis revealed that only a limited number of genes were regulated by p53 upon hypoxia. Most classical p53 target genes were not upregulated. However, we found that Fas/CD95 was significantly induced in response to hypoxia in a p53-dependent manner, along with several novel p53 target genes including ANXA1, DDIT3/ GADD153 (CHOP), SEL1L and SMURF1. Disruption of Fas/CD95 signalling using anti-Fas-blocking antibody or a caspase 8 inhibitor abrogated p53-induced apoptosis in response to hypoxia. We conclude that hypoxia triggers a p53-dependent gene expression pattern distinct from that induced by other stress agents and that Fas/CD95 is a critical regulator of p53-dependent apoptosis upon hypoxia. Cell Death and Differentiation (2007) 14, 411–421. doi:10.1038/sj.cdd.4402022; published online 18 August 2006 The tumor suppressor p53 regulates cellular processes lothionein promoter or expression of exogenous p53. such as cell cycle progression, DNA repair and apoptosis.1 In addition, the numbers of genes on the arrays used p53 is stabilized and activated in response to different types have been relatively low.
    [Show full text]
  • Identification of Prognosis Biomarkers of Prostatic Cancer in a Cohort Of
    Current Problems in Cancer 43 (2019) 100503 Contents lists available at ScienceDirect Current Problems in Cancer journal homepage: www.elsevier.com/locate/cpcancer Identification of prognosis biomarkers of prostatic cancer in a cohort of 498 patients from TCGA ∗ Zhiqiang Chen , Haiyi Hu Department of Urology, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou, China a b s t r a c t Objective: Prostatic cancer (PCa) is the first common cancer in male, and the prognostic variables are ben- eficial for clinical trial design and treatment strategies for PCa. This study was performed to identify more potential biomarkers for the prognosis of patients with PCa. Methods and results: The transcriptome data and survival information of a cohort including 498 subjects with PCa were downloaded from TCGA . A total of 4293 differentially expressed genes (DEGs), including 1362 prognosis-related DEGs, were identified in PCa tissues compared with normal tissues. Upregulated genes, including serine/arginine-rich splicing factors (SRSFs; such as SRSF2, SRSF5, SRSF7 and SRSF8 ), and ubiquitin conjugating enzyme E2 (UBE2) members (such as UBE2D2, UBE2G2, UBE2J1 and UBE2E1 ), were identified as negative prognostic biomarkers of PCa, as the high expression of them correlated with poor overall survival of PCa patients. Several downregulated Golgi-ER traffic mediators (such as SEC31A, TMED2, and TMED10 ) were identified as positive prognostic biomarkers of PCa, as the high expression of them correlated with good overall survival of PCa patients. Conclusions: These genes were of great interests in prognosis of PCa, and some of them may be constructive for the augmentation of clinical trial design and treatment strategies for PCa.
    [Show full text]