Heterogeneous Catalytic Hydrogenation of Aromatic Compounds: I
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Surface Reactions and Chemical Bonding in Heterogeneous Catalysis
Surface reactions and chemical bonding in heterogeneous catalysis Henrik Öberg Doctoral Thesis in Chemical Physics at Stockholm University 2014 Thesis for the Degree of Doctor of Philosophy in Chemical Physics Department of Physics Stockholm University Stockholm 2014 c Henrik Oberg¨ ISBN 978-91-7447-893-8 Abstract This thesis summarizes studies which focus on addressing, using both theoretical and experimental methods, fundamental questions about surface phenomena, such as chemical reactions and bonding, related to processes in heterogeneous catalysis. The main focus is on the theoretical approach and this aspect of the results. The included articles are collected into three categories of which the first contains detailed studies of model systems in heterogeneous catalysis. For example, the trimerization of acetylene adsorbed on Cu(110) is measured using vibrational spectroscopy and modeled within the framework of Density Functional Theory (DFT) and quantitative agreement of the reaction barriers is obtained. In the second category, aspects of fuel cell catalysis are discussed. O2 dissociation is rate-limiting for the reduction of oxygen (ORR) under certain conditions and we find that adsorbate-adsorbate interactions are decisive when modeling this reaction step. Oxidation of Pt(111) (Pt is the electrocatalyst), which may alter the overall activity of the catalyst, is found to start via a PtO-like surface oxide while formation of a-PtO2 trilayers precedes bulk oxidation. When considering alternative catalyst materials for the ORR, their stability needs to be investigated in detail under realistic conditions. The Pt/Cu(111) skin alloy offers a promising candidate but segregation of Cu atoms to the surface is induced by O adsorption. -
A Study of Hydrogen Exchange in Benzene And
A STUDY OF HYDROGEN EXCHANGE IN BENZENE AND SEVERAL ALKYLBENZENES By REX LYNN ELMORE B~chelor of Arts Austin College Sherman, Texas 1960 Submitted to the faculty of the Graduate School of the Oklahpma State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY August, 1965 J OKLAHOMA Jjf STATE UNIVERSITY .;.;, i' LIBRARY f DEC 6 1965 j' A STUDY OF HYDROGEN EXCHANGE IN BENZE~ AND ,,:.-· ;" . ·..... : SEVERAL ALKYLBENZENES f ~~~~~~~"'~"''""i;·~l'J!'~~ Thesis Approved: 593417 ii .ACKNOWLEDGMENTS Grateful acknowledgment is made to-Dr. E. M. Hodnett, research adviser, for his patience, guidance, and assistance throughout this work; to Dr. O. C. Dermer, head of the Chemistry Department, for his reading of the manuscript prior to its being typed; to Mr. C.R. Williams, formerly in the Chemistry Department, for his assistance in the early phases of the computer programming; to Mr. Preston Gant, Central Research Division of the Continental Oil Company, for helpful suggestions on the tritium assays; and to Mr. Prem S. Juneja for his helpful suggestions concerning experimental details which arose from time to time. Acknowledgment is made of financial assistance in the form of a graduate teaching assistantship in the Chemis.try Department. Also, a research as.sistantship from the Atomic Energy Commission, Contract No. AT(ll-1)-1049, through the Research Foundation is appreciated. Research done during the term of the latter assistantship provided material for this thesis. iii TABLE OF CONTENTS Chapter Page I. INTRODUCTION. 1 II. HISTORICAL, , 3 III. INTRODUCTION TO THE EXPERIMENTAL WORK 14 Objectives and Plan of the Study. -
An Indicator of Triplet State Baird-Aromaticity
inorganics Article The Silacyclobutene Ring: An Indicator of Triplet State Baird-Aromaticity Rabia Ayub 1,2, Kjell Jorner 1,2 ID and Henrik Ottosson 1,2,* 1 Department of Chemistry—BMC, Uppsala University, Box 576, SE-751 23 Uppsala, Sweden; [email protected] (R.A.); [email protected] (K.J.) 2 Department of Chemistry-Ångström Laboratory Uppsala University, Box 523, SE-751 20 Uppsala, Sweden * Correspondence: [email protected]; Tel.: +46-18-4717476 Received: 23 October 2017; Accepted: 11 December 2017; Published: 15 December 2017 Abstract: Baird’s rule tells that the electron counts for aromaticity and antiaromaticity in the first ππ* triplet and singlet excited states (T1 and S1) are opposite to those in the ground state (S0). Our hypothesis is that a silacyclobutene (SCB) ring fused with a [4n]annulene will remain closed in the T1 state so as to retain T1 aromaticity of the annulene while it will ring-open when fused to a [4n + 2]annulene in order to alleviate T1 antiaromaticity. This feature should allow the SCB ring to function as an indicator for triplet state aromaticity. Quantum chemical calculations of energy and (anti)aromaticity changes along the reaction paths in the T1 state support our hypothesis. The SCB ring should indicate T1 aromaticity of [4n]annulenes by being photoinert except when fused to cyclobutadiene, where it ring-opens due to ring-strain relief. Keywords: Baird’s rule; computational chemistry; excited state aromaticity; Photostability 1. Introduction Baird showed in 1972 that the rules for aromaticity and antiaromaticity of annulenes are reversed in the lowest ππ* triplet state (T1) when compared to Hückel’s rule for the electronic ground state (S0)[1–3]. -
Surface Models in Heterogeneous Catalysis the Synthesis of Ammonia and the Conversion of Carbon Monoxide
JOURNAL OF CATALYSIS 8, 29-35 (1967) Surface Models in Heterogeneous Catalysis The Synthesis of Ammonia and the Conversion of Carbon Monoxide G. PARRAVANO From the Deparzment qf Chemical and Metallurgical Engineering, University qf Michigan Ann Arbor, Machigan Received November 16, 1966, revised January 16, 1967 The establishment of chemical equilibria between gas and solid catalysts during the synthesis of NH3 and the conversion of CO is considered. Suitable solid-gas equilibrium reactions are discussed. With the correct choice of the rate-controlling step, the equilib- rium surface models are able to reproduce the experimental expressions for the rates of reaction. These models represent a drastic departure from the concept of a fixed, hetero- geneous surface that has been extensively used in the past for the interpretation of the experimental results on the above reactions. The two approaches, however, complement each other and the validity of each one may well be justified under different experimental conditions. Thus, a model may be considered the extension of the other by modification of some of the parameters of the system. Over the past several years many investi- view and it is certainly invalid for relatively gations have been carried out on the catalytic long periods of catalyst operation. It is, synthesis of NH3 and on the conversion of therefore, of interest to consider other CO. The studies have generally been directed possibilities more physically justifiable. toward the understanding of the nature, In this direction it seems particularly properties, and operation of the catalytic important to consider the possibility that surface through the analysis of experimental equilibration reactions between surface and results of reaction rates. -
A General Chemical Method for the Preparation of The
Det Kgl . Danske Videnskabernes Selskab . Mathematisk-fysiske Meddelelser. XV, 13. A GENERAL CHEMICAL METHO D FOR THE PREPARATION OF TH E DEUTERATED BENZENE S B y A . LANGSETH AND A . KLIT KØBENHAVN LEVIN & MUNKSGAAHI? EJNAR MUNKSGA4RD 1937 Printed in Denmark . Bianco Lunos Bogtrykkeri A/S . Survey of the Method . he Raman spectra of the deuterium derivatives of ben- T zene should furnish valuable information concerning the internal vibrations of the benzene molecule, and from these one should also be able to make direct inferences concerning the structure of benzene. We have therefore prepared each of the derivatives in pure form and hav e investigated their spectra . In this paper we shall report only the methods of preparation . The introduction of deuterium into the benzene nucleus has usually been effected by exchange between benzen e and some deuterium compound, with or without a catalyst . The exchange method is quite satisfactory for preparin g hexadeuterobenzene . For the preparation of the intermediat e deuterium derivatives in pure form, however, the method of direct exchange is not applicable, since one can obtai n thereby only mixtures of the various compounds . It is therefore necessary to resort to chemical procedures which can be depended upon to introduce deuterium into definit e places in the ring . Two such procedures which immediatel y suggest themselves are : (1) the decarboxylation of the vari- ous calcium benzene-carboxylates with Ga(OD)2, and (2) the replacement of halogen atoms with deuterium by mean s of a Grignard reaction. The first of these methods was used by EILENMEYE R (Hely. -
Cycloalkanes, Cycloalkenes, and Cycloalkynes
CYCLOALKANES, CYCLOALKENES, AND CYCLOALKYNES any important hydrocarbons, known as cycloalkanes, contain rings of carbon atoms linked together by single bonds. The simple cycloalkanes of formula (CH,), make up a particularly important homologous series in which the chemical properties change in a much more dramatic way with increasing n than do those of the acyclic hydrocarbons CH,(CH,),,-,H. The cyclo- alkanes with small rings (n = 3-6) are of special interest in exhibiting chemical properties intermediate between those of alkanes and alkenes. In this chapter we will show how this behavior can be explained in terms of angle strain and steric hindrance, concepts that have been introduced previously and will be used with increasing frequency as we proceed further. We also discuss the conformations of cycloalkanes, especially cyclo- hexane, in detail because of their importance to the chemistry of many kinds of naturally occurring organic compounds. Some attention also will be paid to polycyclic compounds, substances with more than one ring, and to cyclo- alkenes and cycloalkynes. 12-1 NOMENCLATURE AND PHYSICAL PROPERTIES OF CYCLOALKANES The IUPAC system for naming cycloalkanes and cycloalkenes was presented in some detail in Sections 3-2 and 3-3, and you may wish to review that ma- terial before proceeding further. Additional procedures are required for naming 446 12 Cycloalkanes, Cycloalkenes, and Cycloalkynes Table 12-1 Physical Properties of Alkanes and Cycloalkanes Density, Compounds Bp, "C Mp, "C diO,g ml-' propane cyclopropane butane cyclobutane pentane cyclopentane hexane cyclohexane heptane cycloheptane octane cyclooctane nonane cyclononane "At -40". bUnder pressure. polycyclic compounds, which have rings with common carbons, and these will be discussed later in this chapter. -
Alkenes and Alkynes
02/21/2019 CHAPTER FOUR Alkenes and Alkynes H N O I Cl C O C O Cl F3C C Cl C Cl Efavirenz Haloprogin (antiviral, AIDS therapeutic) (antifungal, antiseptic) Chapter 4 Table of Content * Unsaturated Hydrocarbons * Introduction and hybridization * Alkenes and Alkynes * Benzene and Phenyl groups * Structure of Alkenes, cis‐trans Isomerism * Nomenclature of Alkenes and Alkynes * Configuration cis/trans, and cis/trans Isomerism * Configuration E/Z * Physical Properties of Hydrocarbons * Acid‐Base Reactions of Hydrocarbons * pka and Hybridizations 1 02/21/2019 Unsaturated Hydrocarbons • Unsaturated Hydrocarbon: A hydrocarbon that contains one or more carbon‐carbon double or triple bonds or benzene‐like rings. – Alkene: contains a carbon‐carbon double bond and has the general formula CnH2n. – Alkyne: contains a carbon‐carbon triple bond and has the general formula CnH2n‐2. Introduction Alkenes ● Hydrocarbons containing C=C ● Old name: olefins • Steroids • Hormones • Biochemical regulators 2 02/21/2019 • Alkynes – Hydrocarbons containing C≡C – Common name: acetylenes Unsaturated Hydrocarbons • Arene: benzene and its derivatives (Ch 9) 3 02/21/2019 Benzene and Phenyl Groups • We do not study benzene and its derivatives until Chapter 9. – However, we show structural formulas of compounds containing a phenyl group before that time. – The phenyl group is not reactive under any of the conditions we describe in chapters 5‐8. Structure of Alkenes • The two carbon atoms of a double bond and the four atoms bonded to them lie in a plane, with bond angles of approximately 120°. 4 02/21/2019 Structure of Alkenes • Figure 4.1 According to the orbital overlap model, a double bond consists of one bond formed by overlap of sp2 hybrid orbitals and one bond formed by overlap of parallel 2p orbitals. -
Stereospecific Fragmentations in the Mass Spectra of Stereoisomeric Isoindoloquinazolines
Stereospecific Fragmentations in the Mass Spectra of Stereoisomeric Isoindoloquinazolines Vladimir V. Ovcharenko and Kalevi Pihlaja Structural Chemistry Group, Department of Chemistry, University of Turku, Turku, Finland Ge´za Sta´jer Institute of Pharmaceutical Chemistry, University of Szeged, Szeged, Hungary The mass spectrometric behavior of stereo- and regioisomeric, partially saturated isoindolo- quinazolines was studied by positive-ion electron ionization (EI) and fast-atom bombardment (FAB/LSIMS) mass spectrometry combined with collision-induced dissociation (CID). A highly stereospecific retro-Diels-Alder process was observed in the cyclohexene-fused isomers under the EI conditions, and a corresponding (although less specific) fragmentation was observed in their FAB spectra. In the absence of RDA fragmentations, regio- and stereoisomers of the cyclohexane-fused heterocycles could be distinguished based on their FAB/CID spectra. (J Am Soc Mass Spectrom 2003, 14, 1049–1056) © 2003 American Society for Mass Spectrometry arious condensed-skeleton heterocycles contain- behavior of these compounds under the EI and FAB ing up to three rings can be prepared starting conditions is reported in the present study. Vfrom stereoisomeric aminobicycloalkanecar- The choice of experimental methods was dictated by boxylic acids by applying a retro-Diels-Alder (RDA) the following considerations. Mass-spectrometric RDA decomposition as a part of the synthetic strategy. For fragmentations often proceed in a regio- or stereospe- instance, the reaction of 3-aminobicyclo[2.2.1]hept-5- cific manner [4, 5]. The structure-specificity of RDA ene-2-carboxylic acid with formylbenzoic acid followed phenomena have previously been studied by us in the by a mild thermolysis of the pentacyclic intermediate mass spectra of stereoisomeric polycondensed hetero- afforded the novel 1,3-oxazino[2,3-a]indole-2,6-dione cycles using various ionization methods, such as elec- [1]. -
Water Splitting by Heterogeneous Catalysis
!"#$ #"%"" &' () * ( +# ,% - . ( (.( ( . %/ .0! 1 ( % 2 3 . 4 . 5 % . . % . . . . . . 3 % !# 3 ( 3 ( 3 ( 3 %/. . - % . (. 6 7 % ( 2!0! . (/ (3 . 7 % ( ( 3 % . 3 ( %/ . 8 9 3 8 % ( :;0 9 . <= 3 9 . % ( . ( 3 > % !"#$ ?@@ %% @ A B ?? ? ? #;C#C# ,8D$CD#$$D$":D! ,8D$CD#$$D$";"C ! " # $ (#" D# WATER SPLITTING BY HETEROGENEOUS CATALYSIS Henrik Svengren Water splitting by heterogeneous catalysis Henrik Svengren ©Henrik Svengren, Stockholm University 2017 ISBN print 978-91-7797-039-2 ISBN PDF 978-91-7797-040-8 Printed in Sweden by Universitetsservice US-AB, Stockholm 2017 Distributed by the Department of Materials and Environmental Chemistry To my beloved family Cover image + Heterogeneous catalysis of water oxidation according to 2H2O ĺ O2 + 4H on CoSbO4/CoSb2O6, investigated in Paper II. The figure is composed of SEM- and TEM images, structural drawings, reactant- and product molecules. i Examination Faculty opponent Docent Tomas Edvinsson Solid State Physics Department of Engineering Sciences Uppsala University, -
Reactions of Alkenes and Alkynes
05 Reactions of Alkenes and Alkynes Polyethylene is the most widely used plastic, making up items such as packing foam, plastic bottles, and plastic utensils (top: © Jon Larson/iStockphoto; middle: GNL Media/Digital Vision/Getty Images, Inc.; bottom: © Lakhesis/iStockphoto). Inset: A model of ethylene. KEY QUESTIONS 5.1 What Are the Characteristic Reactions of Alkenes? 5.8 How Can Alkynes Be Reduced to Alkenes and 5.2 What Is a Reaction Mechanism? Alkanes? 5.3 What Are the Mechanisms of Electrophilic Additions HOW TO to Alkenes? 5.1 How to Draw Mechanisms 5.4 What Are Carbocation Rearrangements? 5.5 What Is Hydroboration–Oxidation of an Alkene? CHEMICAL CONNECTIONS 5.6 How Can an Alkene Be Reduced to an Alkane? 5A Catalytic Cracking and the Importance of Alkenes 5.7 How Can an Acetylide Anion Be Used to Create a New Carbon–Carbon Bond? IN THIS CHAPTER, we begin our systematic study of organic reactions and their mecha- nisms. Reaction mechanisms are step-by-step descriptions of how reactions proceed and are one of the most important unifying concepts in organic chemistry. We use the reactions of alkenes as the vehicle to introduce this concept. 129 130 CHAPTER 5 Reactions of Alkenes and Alkynes 5.1 What Are the Characteristic Reactions of Alkenes? The most characteristic reaction of alkenes is addition to the carbon–carbon double bond in such a way that the pi bond is broken and, in its place, sigma bonds are formed to two new atoms or groups of atoms. Several examples of reactions at the carbon–carbon double bond are shown in Table 5.1, along with the descriptive name(s) associated with each. -
Adapting Neural Machine Translation to Predict IUPAC Names from a Chemical Identifier
Translating the molecules: adapting neural machine translation to predict IUPAC names from a chemical identifier Jennifer Handsel*,a, Brian Matthews‡,a, Nicola J. Knight‡,b, Simon J. Coles‡,b aScientific Computing Department, Science and Technology Facilities Council, Didcot, OX11 0FA, UK. bSchool of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK. KEYWORDS seq2seq, InChI, IUPAC, transformer, attention, GPU ABSTRACT We present a sequence-to-sequence machine learning model for predicting the IUPAC name of a chemical from its standard International Chemical Identifier (InChI). The model uses two stacks of transformers in an encoder-decoder architecture, a setup similar to the neural networks used in state-of-the-art machine translation. Unlike neural machine translation, which usually tokenizes input and output into words or sub-words, our model processes the InChI and predicts the 1 IUPAC name character by character. The model was trained on a dataset of 10 million InChI/IUPAC name pairs freely downloaded from the National Library of Medicine’s online PubChem service. Training took five days on a Tesla K80 GPU, and the model achieved test-set accuracies of 95% (character-level) and 91% (whole name). The model performed particularly well on organics, with the exception of macrocycles. The predictions were less accurate for inorganic compounds, with a character-level accuracy of 71%. This can be explained by inherent limitations in InChI for representing inorganics, as well as low coverage (1.4 %) of the training data. INTRODUCTION The International Union of Pure and Applied Chemistry (IUPAC) define nomenclature for both organic chemistry2 and inorganic chemistry.3 Their rules are comprehensive, but are difficult to apply to complicated molecules. -
Catalytic Oxidation of NO to NO2 for Nitric Acid Production Over a Pt
1 Catalytic oxidation of NO to NO2 for nitric acid production over a Pt/Al2O3 catalyst Ata ul Rauf Salmana, Bjørn Christian Engerb, Xavier Auvraya c, Rune Lødengb, Mohan Menond, David Wallerd, Magnus Rønninga* a Department of Chemical Engineering, Norwegian University of Science and Technology (NTNU), Sem Sælands vei 4, NO-7491 Trondheim, Norway. b SINTEF Industry, Kinetic and Catalysis group, P.O. Box 4760 Torgarden, NO-7465 Trondheim, Norway. c Current address: Competence Centre for Catalysis, Chemical Engineering, Chalmers University of Technology, S-412 96 Gothenburg, Sweden d YARA Technology Center, Herøya Forskningspark, Bygg 92, Hydrovegen 67, NO-3936 Porsgrunn, Norway. * Corresponding author. Tel.: +47 73594121. E-mail address: [email protected] (M. Rønning). 2 Abstract The oxidation of nitric oxide (NO) to nitrogen dioxide (NO2) is a key step both in NOx abatement technologies as well as in the Ostwald process for nitric acid production. A 1 wt.% Pt/Al2O3 catalyst was used to study oxidation of nitric oxide at two different concentrations of NO; 400 ppm NO (representative of engine exhaust treatment) and 10% NO (nitric acid plant). The catalyst was characterised using N2 adsorption and CO chemisorption. The effect of temperature and feed concentration on catalytic activity was investigated. For a feed comprising of 10% NO and 6% O2, Pt/Al2O3 exhibits significant catalytic activity above o 300 C. Addition of 15% H2O in the feed had an insignificant effect on activity of the catalyst. We report for the first time the kinetics for oxidation of NO to NO2 under nitric acid plant conditions. An apparent activation energy of 33 kJ/mol was observed.