Analysis of Kif5b Expression During Mouse Kidney Development
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Drp1 Overexpression Induces Desmin Disassembling and Drives Kinesin-1 Activation Promoting Mitochondrial Trafficking in Skeletal Muscle
Cell Death & Differentiation (2020) 27:2383–2401 https://doi.org/10.1038/s41418-020-0510-7 ARTICLE Drp1 overexpression induces desmin disassembling and drives kinesin-1 activation promoting mitochondrial trafficking in skeletal muscle 1 1 2 2 2 3 Matteo Giovarelli ● Silvia Zecchini ● Emanuele Martini ● Massimiliano Garrè ● Sara Barozzi ● Michela Ripolone ● 3 1 4 1 5 Laura Napoli ● Marco Coazzoli ● Chiara Vantaggiato ● Paulina Roux-Biejat ● Davide Cervia ● 1 1 2 1,4 6 Claudia Moscheni ● Cristiana Perrotta ● Dario Parazzoli ● Emilio Clementi ● Clara De Palma Received: 1 August 2019 / Revised: 13 December 2019 / Accepted: 23 January 2020 / Published online: 10 February 2020 © The Author(s) 2020. This article is published with open access Abstract Mitochondria change distribution across cells following a variety of pathophysiological stimuli. The mechanisms presiding over this redistribution are yet undefined. In a murine model overexpressing Drp1 specifically in skeletal muscle, we find marked mitochondria repositioning in muscle fibres and we demonstrate that Drp1 is involved in this process. Drp1 binds KLC1 and enhances microtubule-dependent transport of mitochondria. Drp1-KLC1 coupling triggers the displacement of KIF5B from 1234567890();,: 1234567890();,: kinesin-1 complex increasing its binding to microtubule tracks and mitochondrial transport. High levels of Drp1 exacerbate this mechanism leading to the repositioning of mitochondria closer to nuclei. The reduction of Drp1 levels decreases kinesin-1 activation and induces the partial recovery of mitochondrial distribution. Drp1 overexpression is also associated with higher cyclin-dependent kinase-1 (Cdk-1) activation that promotes the persistent phosphorylation of desmin at Ser-31 and its disassembling. Fission inhibition has a positive effect on desmin Ser-31 phosphorylation, regardless of Cdk-1 activation, suggesting that induction of both fission and Cdk-1 are required for desmin collapse. -
Profilin-1 Is Required for Survival of Adult Hematopoietic Stem Cells
Extended methods Immunohistochemistry HepG-2, SMMC-7721, and 293T cells were obtained from Cell Resource Center of Shanghai Institute for Biological Science, Chinese Academy Science, Shanghai, China. HUVEC cells were kindly provided by Prof. Ping-Jin Gao at Institute of Health Sciences (Shanghai, China). All these cell lines were cultured in DMEM with 10% FBS. MDA- MB-231 cell line was kindly provided by Prof. Ming-Yao Liu (East China Normal University, Shanghai, China) and was cultured in Leibovitz L-15 medium with 10% FBS. All these cell lines were originally purchased from ATCC. MDA-MB-231, SMMC-7721 or HepG2 cells were grown on coverslips in 24-well plates and fixed in either 4% paraformaldehyde or pre-chilled methanol (-20°C) for 10 min. In some cases, WT or VPS33B-null Lin-Sca-1+c-Kit+Flk2-CD34- LT-HSCs were collected by flow cytometry and fixed for immunofluorescence staining. Cells were then blocked with 3% BSA in PBS for 60 min followed by incubation with primary antibodies overnight. The antibodies used were anti-HA (Sigma), anti-Flag (Sigma), anti-VPS33B (Sigma), anti- VPS16B (Abcam), anti-GDI2 (Proteintech), anti-LAMP1 (Proteintech), anti-FLOT1 (Abways), anti-CD63 (Proteintech), anti-ANGPTL2 (R&D system), anti-ANGPTL3 (R&D system), anti-TPO (Abways), anti-GLUT1 (Proteintech), anti-LDHA (Proteintech), anti-PKM2 (CST), anti-RAB11A (Abways), anti-RAB27A (Abways) and anti-V5 (Biodragon). Fluorescent-conjugated secondary antibodies (Alexa Fluor® 488 or Alexa Fluor® 555) against mouse, rabbit, or goat were obtained from the Thermo Scientific Inc. The details for all the antibodies are listed in Table S3. -
RET Gene Fusions in Malignancies of the Thyroid and Other Tissues
G C A T T A C G G C A T genes Review RET Gene Fusions in Malignancies of the Thyroid and Other Tissues Massimo Santoro 1,*, Marialuisa Moccia 1, Giorgia Federico 1 and Francesca Carlomagno 1,2 1 Department of Molecular Medicine and Medical Biotechnology, University of Naples “Federico II”, 80131 Naples, Italy; [email protected] (M.M.); [email protected] (G.F.); [email protected] (F.C.) 2 Institute of Endocrinology and Experimental Oncology of the CNR, 80131 Naples, Italy * Correspondence: [email protected] Received: 10 March 2020; Accepted: 12 April 2020; Published: 15 April 2020 Abstract: Following the identification of the BCR-ABL1 (Breakpoint Cluster Region-ABelson murine Leukemia) fusion in chronic myelogenous leukemia, gene fusions generating chimeric oncoproteins have been recognized as common genomic structural variations in human malignancies. This is, in particular, a frequent mechanism in the oncogenic conversion of protein kinases. Gene fusion was the first mechanism identified for the oncogenic activation of the receptor tyrosine kinase RET (REarranged during Transfection), initially discovered in papillary thyroid carcinoma (PTC). More recently, the advent of highly sensitive massive parallel (next generation sequencing, NGS) sequencing of tumor DNA or cell-free (cfDNA) circulating tumor DNA, allowed for the detection of RET fusions in many other solid and hematopoietic malignancies. This review summarizes the role of RET fusions in the pathogenesis of human cancer. Keywords: kinase; tyrosine kinase inhibitor; targeted therapy; thyroid cancer 1. The RET Receptor RET (REarranged during Transfection) was initially isolated as a rearranged oncoprotein upon the transfection of a human lymphoma DNA [1]. -
RET Aberrations in Diverse Cancers: Next-Generation Sequencing of 4,871 Patients Shumei Kato1, Vivek Subbiah2, Erica Marchlik3, Sheryl K
Published OnlineFirst September 28, 2016; DOI: 10.1158/1078-0432.CCR-16-1679 Personalized Medicine and Imaging Clinical Cancer Research RET Aberrations in Diverse Cancers: Next-Generation Sequencing of 4,871 Patients Shumei Kato1, Vivek Subbiah2, Erica Marchlik3, Sheryl K. Elkin3, Jennifer L. Carter3, and Razelle Kurzrock1 Abstract Purpose: Aberrations in genetic sequences encoding the tyrosine (52/88)], cell cycle–associated genes [39.8% (35/88)], the PI3K kinase receptor RET lead to oncogenic signaling that is targetable signaling pathway [30.7% (27/88)], MAPK effectors [22.7% with anti-RET multikinase inhibitors. Understanding the compre- (20/88)], or other tyrosine kinase families [21.6% (19/88)]. hensive genomic landscape of RET aberrations across multiple RET fusions were mutually exclusive with MAPK signaling cancers may facilitate clinical trial development targeting RET. pathway alterations. All 72 patients harboring coaberrations Experimental Design: We interrogated the molecular portfolio had distinct genomic portfolios, and most [98.6% (71/72)] of 4,871 patients with diverse malignancies for the presence of had potentially targetable coaberrations with either an FDA- RET aberrations using Clinical Laboratory Improvement Amend- approved or an investigational agent. Two cases with lung ments–certified targeted next-generation sequencing of 182 or (KIF5B-RET) and medullary thyroid carcinoma (RET M918T) 236 gene panels. thatrespondedtoavandetanib(multikinase RET inhibitor)- Results: Among diverse cancers, RET aberrations were iden- containing regimen are shown. tified in 88 cases [1.8% (88/4, 871)], with mutations being Conclusions: RET aberrations were seen in 1.8% of diverse the most common alteration [38.6% (34/88)], followed cancers, with most cases harboring actionable, albeit dis- by fusions [30.7% (27/88), including a novel SQSTM1-RET] tinct, coexisting alterations. -
Mitochondria Are Transported Along Microtubules in Membrane
Shen et al. Cell Death and Disease (2018) 9:81 DOI 10.1038/s41419-017-0145-x Cell Death & Disease ARTICLE Open Access Mitochondria are transported along microtubules in membrane nanotubes to rescue distressed cardiomyocytes from apoptosis Jing Shen1,2,3,4, Jiang-Hui Zhang1,2,3,4,HanXiao1,2,3,4,Ji-MinWu1,2,3,4,Kang-MinHe1,2,3,4,Zhi-ZhenLv1,2,3,4, Zi-Jian Li1,2,3,4, Ming Xu1,2,3,4 and You-Yi Zhang1,2,3,4 Abstract Membrane nanotubes (MNTs) act as “highways” between cells to facilitate the transfer of multiple signals and play an important role in many diseases. Our previous work reported on the transfer of mitochondria via MNTs between cardiomyocytes (CMs) and cardiac myofibroblasts (MFs); however, the elucidation of the underlying mechanism and pathophysiological significance of this transfer requires additional study. In this study, we determined that the mean movement velocity of mitochondria in MNTs between CMs and MFs was approximately 17.5 ± 2.1 nm/s. Meanwhile, treatment with microtubule polymerisation inhibitors nocodazole or colcemid in cell culture decreased mitochondrial velocity, and knockdown of the microtubule motor protein kinesin family member 5B (KIF5B) led to a similar effect, indicating that mitochondrial movement was dependent on microtubules and the motor protein KIF5B. Furthermore, we showed that hypoxia/reoxygenation-induced CM 1234567890 1234567890 apoptosis was attenuated by coculture with intact or hypoxia/reoxygenation-treated MFs, which transferred mitochondria to CMs. This rescue was prevented either by separating the cells using Transwell culture or by impairing mitochondrial transfer with nocodazole or colcemid treatment. -
The Universal Mechanism of Intermediate Filament Transport
bioRxiv preprint doi: https://doi.org/10.1101/251405; this version posted January 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 The universal mechanism of intermediate filament transport. 2 3 Amélie Robert1, Peirun Tian1, Stephen A. Adam1, Robert D. Goldman1 and Vladimir I. Gelfand1* 4 5 1Department of Cell and Molecular Biology, Feinberg School of Medicine, Northwestern 6 University, Chicago, IL 60611, USA. 7 8 *Corresponding author. 9 Address: Department of Cell and Molecular Biology, Feinberg School of Medicine, 10 Northwestern University, 303 E. Chicago Ave. Ward 11-100, Chicago, IL 60611-3008 11 E-mail address: [email protected] 12 Phone: (312) 503-0530 13 Fax: (312) 503-7912 14 15 1 bioRxiv preprint doi: https://doi.org/10.1101/251405; this version posted January 22, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 16 ABSTRACT 17 Intermediate filaments (IFs) are a major component of the cytoskeleton that regulates a wide 18 range of physiological properties in eukaryotic cells. In motile cells, the IF network has to adapt 19 to constant changes of cell shape and tension. In this study, we used two cell lines that express 20 vimentin and keratins 8/18 to study the dynamic behavior of these IFs. -
Activation of Conventional Kinesin Motors in Clusters by Shaw Voltage
Research Article 2027 Activation of conventional kinesin motors in clusters by Shaw voltage-gated K+ channels Joshua Barry1, Mingxuan Xu2,*, Yuanzheng Gu2, Andrew W. Dangel3, Peter Jukkola4, Chandra Shrestha2,` and Chen Gu1,2,4,§ 1Molecular, Cellular and Developmental Biology Graduate Program, The Ohio State University, Columbus, OH 43210, USA 2Department of Neuroscience, The Ohio State University, Columbus, OH 43210, USA 3Plant-Microbe Genomics Facility, The Ohio State University, Columbus, OH 43210, USA 4Integrated Biomedical Graduate Program, The Ohio State University, Columbus, OH 43210, USA *Present address: Department of Neurology, Baylor College of Medicine, Houston, TX 77030, USA `Present address: Department of Biomedical Sciences and Pathobiology, College of Veterinary Medicine, Virginia Tech University, Blacksburg, VA 24061, USA §Author for correspondence ([email protected]) Accepted 19 February 2013 Journal of Cell Science 126, 2027–2041 ß 2013. Published by The Company of Biologists Ltd doi: 10.1242/jcs.122234 Summary The conventional kinesin motor transports many different cargos to specific locations in neurons. How cargos regulate motor function remains unclear. Here we focus on KIF5, the heavy chain of conventional kinesin, and report that the Kv3 (Shaw) voltage-gated K+ channel, the only known tetrameric KIF5-binding protein, clusters and activates KIF5 motors during axonal transport. Endogenous KIF5 often forms clusters along axons, suggesting a potential role of KIF5-binding proteins. Our biochemical assays reveal that the high- affinity multimeric binding between the Kv3.1 T1 domain and KIF5B requires three basic residues in the KIF5B tail. Kv3.1 T1 competes with the motor domain and microtubules, but not with kinesin light chain 1 (KLC1), for binding to the KIF5B tail. -
Treadmill Training Modifies KIF5B Motor Protein in the STZ-Induced Diabetic Rat Spinal Cord and Sciatic Nerve
7UDLQLQJDQG$[RQDO0RWRU3URWHLQLQ'LDEHWHV Original Article 7UHDGPLOO7UDLQLQJ0RGL¿HV.,)%0RWRU3URWHLQLQWKH STZ-induced Diabetic Rat Spinal Cord and Sciatic Nerve Masoud Rahmati PhD15H]D*KDUDNKDQORX3K'2, Mansoureh Movahedin PhD3, Seyed Javad Mowla PhD4, Ali Khazani PhD5, Mary- am Fouladvand MSc6, Shiva Jahani Golbar MSc7 Abstract Background:3UHYLRXVUHVHDUFKKDVGHPRQVWUDWHGGLDEHWLFLQGXFHGD[RQDOWUDQVSRUWGH¿FLWV+RZHYHUWKHPHFKDQLVPRID[RQDOWUDQV- SRUWLPSDLUPHQWLQGXFHGE\GLDEHWHVLVSRRUO\XQGHUVWRRG.LQHVLQPRWRUSURWHLQVKDYHEHHQVKRZQWRWUDQVSRUWYDULRXVFDUJRVDORQJKLJKO\ SRODUL]HGQHXURQV,QWKHSUHVHQWVWXG\ZHLQYHVWLJDWHGWKHHIIHFWRIUHJXODUWUHDGPLOOH[HUFLVHRQ.,)%DQG6XQGD\'ULYHU 6<' P51$ OHYHOVLQVHQVRU\DQGPRWRUSDUWVRIVSLQDOFRUGDQG.,)%FRQWHQWLQVFLDWLFQHUYHVRIVWUHSWR]RWRFLQ 67= LQGXFHGGLDEHWLFUDWV Methods: Forty male Wistar rats were divided into four groups: (1) diabetic trained (DT: n = 10); (2) Non-trained diabetic (NTD: n = 10); (3) QRUPDOFRQWURO 1&Q DQG QRUPDOWUDLQHG 17Q 7ZRZHHNVDIWHU67=LQMHFWLRQ PJNJLS WKHUDWVZHUHVXEMHFWHGWR WUHDGPLOOH[HUFLVHIRUGD\VDZHHNRYHUZHHNV:HGHWHUPLQHGP51$OHYHOVDQGSURWHLQFRQWHQWE\5HDOWLPH3&5DQG(/,6$ Results:([HUFLVHWUDLQLQJGHFUHDVHGEORRGJOXFRVHOHYHOVLQWKH'7UDWV'LDEHWHVLQFUHDVHGWKH.,)%DQG6<'P51$LQERWKVHQVRU\ DQGPRWRUSDUWVDQG.,)%FRQWHQWLQVFLDWLFQHUYHVLQWKH17'0RUHRYHUH[HUFLVHWUDLQLQJPRGXODWHGWKH.,)%DQG6<'P51$DQG .,)%FRQWHQWWRQRUPDOOHYHOVLQWKH'7([HUFLVHWUDLQLQJLQ17UDWVLQFUHDVHG.,)%DQG6<'P51$LQVHQVRU\DQGPRWRUSDUWVDQG .,)%FRQWHQWLQVFLDWLFQHUYHV Conclusions:2XUUHVXOWVVXJJHVWWKDWGLDEHWHVVHHPVWRFKDQJHVSLQDOFRUG.,)%DQG6<'P51$DQGVFLDWLFQHUYHV.,)%FRQWHQWDQG -
Fast Transport of RNA Granules by Direct Interactions with KIF5A/KLC1 Motors Prevents Axon 2 Degeneration 3 4 Yusuke Fukuda1,2, Maria F
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.02.931204; this version posted February 3, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Fast Transport of RNA Granules by Direct Interactions with KIF5A/KLC1 Motors Prevents Axon 2 Degeneration 3 4 Yusuke Fukuda1,2, Maria F. Pazyra-Murphy1,2, Ozge E. Tasdemir-Yilmaz1,2, Yihang Li1,2, Lillian Rose1,2, Zoe 5 C. Yeoh2, Nicholas E. Vangos2, Ezekiel A. Geffken2, Hyuk-Soo Seo2,3, Guillaume Adelmant2,4, Gregory H. 6 Bird2,5,6, Loren D. Walensky2,5,6 Jarrod A. Marto2,4, Sirano Dhe-Paganon2,3, and Rosalind A. Segal1,2,7,* 7 8 1Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA 9 2Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA 10 3Department of Biological Chemistry & Molecular Pharmacology, Harvard Medical School, Boston, MA 11 02115, USA 12 4Blais Proteomics Center, Dana-Farber Cancer Institute, Boston, MA 02115, USA 13 5Linde Program in Cancer Chemical Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA 14 6Department of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA 15 7Lead Contact 16 *Correspondence: [email protected] (R.A.S.) 17 18 19 20 Abstract 21 Complex neural circuitry requires stable connections formed by lengthy axons. To maintain these 22 functional circuits, fast transport delivers RNAs to distal axons where they undergo local translation. -
Contribution of Dysferlin-Containing Membranes to Membrane Repair in Skeletal Muscle
CONTRIBUTION OF DYSFERLIN-CONTAINING MEMBRANES TO MEMBRANE REPAIR IN SKELETAL MUSCLE by Joel Ryan McDade A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Molecular and Integrative Physiology) in the University of Michigan 2014 Doctoral Committee: Associate Professor Daniel E. Michele, Chair Associate Professor Anatoli Lopatin Associate Professor Susan Brooks Herzog Associate Professor Kristen J. Verhey "Success is not a random act. It arises out of a predictable and powerful set of circumstances and opportunities." -Malcolm Gladwell This thesis is dedicated to everyone who provided me with the circumstances and opportunities necessary to succeed. ii ACKNOWLEDGEMENTS First, I would like to thank my mentor Dan, whose tremendous patience and outstanding mentoring made the work within this thesis possible. I am not only speaking for myself when I say that your guidance and support was vital for my success as a graduate student and my vision for the future. I would also like to thank the members of my committee, who have provided me with critical feedback, reagents, and support over the last several years. There are several people with whom I interacted with that were critical for my professional and personal development. When I joined the Physiology Department I was assigned an informal mentor to guide me through the ups and downs of the graduate school experience. My meetings with Ormond ended up teaching me a lot about how I should approach science, and for that I am grateful. The members of the Microscopy and Image Analysis Laboratory have guided me on all matters related to microscopy from the initial experiments in this thesis all the way through to the end. -
Specific Depletion of the Motor Protein KIF5B Leads to Deficits in Dendritic
RESEARCH ARTICLE Specific depletion of the motor protein KIF5B leads to deficits in dendritic transport, synaptic plasticity and memory Junjun Zhao1†, Albert Hiu Ka Fok1†, Ruolin Fan1, Pui-Yi Kwan1, Hei-Lok Chan1, Louisa Hoi-Ying Lo1, Ying-Shing Chan2, Wing-Ho Yung3, Jiandong Huang1,2,4, Cora Sau Wan Lai1,2*, Kwok-On Lai1,2* 1School of Biomedical Sciences, The University of Hong Kong, Hong Kong, China; 2State Key Laboratory of Brain and Cognitive Sciences, The University of Hong Kong, Hong Kong, China; 3School of Biomedical Sciences, Chinese University of Hong Kong, Hong Kong, China; 4Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China Abstract The kinesin I family of motor proteins are crucial for axonal transport, but their roles in dendritic transport and postsynaptic function are not well-defined. Gene duplication and subsequent diversification give rise to three homologous kinesin I proteins (KIF5A, KIF5B and KIF5C) in vertebrates, but it is not clear whether and how they exhibit functional specificity. Here we show that knockdown of KIF5A or KIF5B differentially affects excitatory synapses and dendritic transport in hippocampal neurons. The functional specificities of the two kinesins are determined by their diverse carboxyl-termini, where arginine methylation occurs in KIF5B and regulates its *For correspondence: function. KIF5B conditional knockout mice exhibit deficits in dendritic spine morphogenesis, [email protected] (CSWL); synaptic plasticity and memory formation. Our findings provide insights into how expansion of the [email protected] (K-OL) kinesin I family during evolution leads to diversification and specialization of motor proteins in †These authors contributed regulating postsynaptic function. -
Integrin Αvβ6-EGFR Crosstalk Regulates Bidirectional Force Transmission and Controls Breast Cancer Invasion
bioRxiv preprint doi: https://doi.org/10.1101/407908; this version posted September 4, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Integrin αVβ6-EGFR crosstalk regulates bidirectional force transmission and controls breast cancer invasion Joanna R. Thomas1#, Kate M. Moore2#, Caroline Sproat2, Horacio J. Maldonado-Lorca1, Stephanie Mo1, Syed Haider3, Dean Hammond1, Gareth J. Thomas5, Ian A. Prior1, Pedro R. Cutillas2, Louise J. Jones2, John F. Marshall2†, Mark R. Morgan1† 1 Institute of Translational Medicine, University of Liverpool, Crown Street, Liverpool, L69 3BX, UK. 2 Centre for Tumour Biology, Barts Cancer Institute, Queen Mary University London, John Vane Science Centre, Charterhouse Square, London EC1M 6BQ, UK. 3 The Weatherall Institute of Molecular Medicine, Department of Oncology, University of Oxford, Oxford OX3 9DS, UK. 4 Cancer Research UK Centre for Epidemiology, Mathematics and Statistics, Wolfson Institute of Preventative Medicine, Queen Mary University London, Charterhouse Square, London EC1M 6BQ, UK. 5 Cancer Sciences Division, Somers Building, Southampton General Hospital, Southampton, SO16 6YA, UK. # Denotes equal contribution † Corresponding author Correspondence to: Dr Mark R. Morgan, PhD, Cellular & Molecular Physiology, Institute of Translational Medicine, University of Liverpool, Crown Street, Liverpool, L69 3BX,